mRNA_F-serratus_M_contig1054.561.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1054.561.1 vs. uniprot
Match: D7FNX8_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX8_ECTSI) HSP 1 Score: 149 bits (376), Expect = 9.390e-34 Identity = 121/372 (32.53%), Postives = 174/372 (46.77%), Query Frame = 3 Query: 45 EKRASEIASQAGLQDRRSRLVWVGATSRANAAGRDLEG---DDDEAY--------------YRSAPWRHLSLALQHSLCNLQTTGGTEGHSVDDGHSRWNEGGGLSLSNASCFYSGASWGAFSQGRGHGYVSSFNPRVLNGDELSFIRRALRSCRRRKAGHRRKSRER-------GSDTETFAKEGGYTEAPRDEDEGKREPNRHGDNLEEDETFSLETFVIFSRRWWGQVMVTLSRIPKEWASVCPVKVHGFIARLDAERRLLKEGLPGVFLLRFSESRPGQLVLTFTCEASQAPG------TEAPTNRSGSVRIAIQHSLVTAQPNGQWTLHYGNDKRSGLSYPSLRDLVNDKTILRTLYPKFAKEEAFE 1070 EKRA + A AGL DR RLVWV AT+ A G +G D+ + Y PW +L L LC T + VD+G W AS G G+G V++ R +N +EL+F+R L++ + + + K R++ G++ + G A R + SL+ FV FS WW +M TLS + +WAS P +VHGFI+R+ AER+LL E G FLLRFSES+PG+LV++FT +QA T AP +R S + ++H LV + G + ++ S + YPSL DLV + ++ LYP KE+AF+ Sbjct: 594 EKRAWDTARTAGLMDRGCRLVWVKATTNALLNGWTYDGGGGSDNGGFGWPAEGAGAGGVTNYDCVPWDYLRRGLMQHLCGKLTIPSSHDEVVDEGPYGWR--------------GDASSVGVGVGNGYGAVNTPQVRWMNEEELAFVRGVLKAKQEKVRLKQEKLRQQRASRGYAGTELVSIGSSGAADAA------SGRXXXXXXXXXXXXDVISLDAFVEFSL-WWAPLMPTLSLLRNDWASTNPTRVHGFISRIAAERQLL-ERERGTFLLRFSESQPGELVVSFTEHVTQAAPRASSMLTSAPRSRPRSQSMCVKHCLVEVRRGGWCYIEV--EQGSKVPYPSLHDLVLACSSMQVLYPDVRKEDAFD 941
BLAST of mRNA_F-serratus_M_contig1054.561.1 vs. uniprot
Match: A0A6H5KJ41_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ41_9PHAE) HSP 1 Score: 124 bits (310), Expect = 2.350e-27 Identity = 105/322 (32.61%), Postives = 161/322 (50.00%), Query Frame = 3 Query: 213 LQHSLCNLQTTGGTEGHSVDDGHSRWNEGGGLSLSNASCFYSGASWGAFSQGRGHGYVSSFNPRVLNGDELSFIRRALRSCRRRKAGHRRKSRER-------GSDTETFAKEGGYTEAPRDEDEGKREPNRHGDNLEEDETFSLETFVIFSRRWWGQVMVTLSRIPKEWASVCPVKVHGFIARLDAERRLLKEGLPGVFLLRFSESRPGQLVLTFTCEASQAPGTE------APTNRSGSVRIAIQHSLVTAQPNGQWTLHYGNDKRSGLSYPSLRDLVNDKTILRTLYPKFAKEEAFETS*QHLKLVGRQRYMGSGDDARV 1139 +QH LC T + VD+G W +AS + G +G G+G V++ R +N +EL+F+R L++ + + + K R++ G++ + G A G+ N +G+ + SLE FV FS WW +M TLS + +WAS P +VHGFI+R+ AER+LL E G FLLRFSES+PG+LV++FT +QA + AP +R S + ++H LV + G + ++ S + YPSL DLV + + LYP KE+AF+ + G + G G DA + Sbjct: 1 MQH-LCGNLTIPSNDTKVVDEGPYGWR-------GDASVGFGGRG----GEGNGYGAVNTPQVRWMNEEELAFVRGVLKTKQEKVRLKQEKLRQQLASRGYSGTELVSIGSSGAADAAF-----GRDGGNGNGNVI------SLEAFVEFSL-WWAPLMTTLSLLRNDWASTNPTRVHGFISRIAAERQLL-ERERGTFLLRFSESQPGELVVSFTEHVTQAAPRDSSMLASAPCSRPRSQSMCVKHCLVEVRRGGWCYIEV--EQGSKVPYPSLHDLVLACSSMEVLYPDVRKEDAFD------EPSGGGPWGGGGGDAAL 289
BLAST of mRNA_F-serratus_M_contig1054.561.1 vs. uniprot
Match: D7FNY4_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY4_ECTSI) HSP 1 Score: 103 bits (258), Expect = 2.940e-19 Identity = 102/342 (29.82%), Postives = 146/342 (42.69%), Query Frame = 3 Query: 45 EKRASEIASQAGLQDRRSRLVWVGATSRANAAGRDLEGDDDEAYYRSAPWRHLSL-ALQHSLCNLQTTGGTEGHSVDDGHSRWNEGGGLSLSNASCFYSGASWGAFSQGRGHGYVSSFNPRVLNGDELSFIRRALRSCRRRKAGHRRKSRERGSDTETFAKEGGYTEAPRDEDEGKREPNRHGDNLEEDETFSLETFVIFSRRWWGQVMVTLSRIPKEWASVCPVKVHGFIARLDAERRLLKEGLPGVFLLRFSESRPGQLVLTFTCEASQAPGTEAPTNRSGSVRIAIQHSLVTAQPNGQWTLHYGNDKRSGLSYPSLRDLVNDKTILRTLYPKFAKEEAF 1067 E+R ++A AG+ DR RLVWV ATSR R + + S + +S LQ SL G + DD + S + RV + +L FIR LR RG + A+ G + + D G R + S+E F FS+ WW ++ TL I +WA PV+VHGF++RL A+R L++ G FLLRFSES+ G LV++FT + S +PG + ++++HSLV + G+ + +K Y SL D V L+ LYP KEEAF Sbjct: 627 EQRTRDLARAAGVVDRGCRLVWVTATSRMAGGCRQDDXXXXXXXWSSRRGKLVSWECLQESLMEHLREGTKTTRNWDDP-----------------------------------IISPHGRVADTPQLEFIRGILR---------------RGQEAVARARWGATGDECPEVDGGCRY-----------DFISVEAFAKFSQ-WWAPLISTLGIIRNDWARTRPVRVHGFMSRLAAKRLLMQREC-GTFLLRFSESKMGALVISFT-QPSVSPGRRS---------LSVKHSLVEVKWGGRCCIQA--EKGGMRCYASLHDFVRRIPELKKLYPDIPKEEAF 893
BLAST of mRNA_F-serratus_M_contig1054.561.1 vs. uniprot
Match: A0A6H5JPT3_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPT3_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 4.680e-18 Identity = 109/374 (29.14%), Postives = 150/374 (40.11%), Query Frame = 3 Query: 45 EKRASEIASQAGLQDRRSRLVWVGATSRANAAGRDLEGDDDEAYYRSAPWRHLSL-ALQHSLCNLQTTGGTEGHSVDDGHSRWNEGGGLSLSNASCFYSGASWGAFSQGRGHGYVSSFNPRVLNGDELSFIRRALRSCRRRKAGHRRKSRERGSDTETFAKEGGYTEAPRDEDEGKREPNRHGDNLEEDETFSLETFVIFSRRWWGQVMVTLSRIPKEWASVCPVKVHGFIARLDAERRLLKEGLPGVFLLRFSESRPGQLVLTFT---------------------CEASQAPGTE-APTN----------RSGSVRIAIQHSLVTAQPNGQWTLHYGNDKRSGLSYPSLRDLVNDKTILRTLYPKFAKEEAF 1067 E+RA ++A AG+ DR RL+WV ATSR R +G + S +S LQ SL G + DD + + RV++ +L FIR LR RG + A+ G G GD D+ S+E F FS+ WW +M TL I +WA+ PV+VHGF++R+ A +RLL + G FLLRFSESR G LV++FT C A + +P N RSG ++++HSLV + G+ + +K Y SL D V L+ LYP KEEAF Sbjct: 130 EQRAWDLARAAGVVDRGCRLIWVTATSRMARGCRQDDGGGSGGGWSSRRGEIVSWECLQESLMEHLREGTKTTRNWDDP-----------------------------------IILPHGRVVDTPQLEFIRGILR---------------RGQEAVAKARWGAT---------GDECTEVGGDGR--DDFVSVEAFANFSQ-WWAPLMATLGIIRNDWATTRPVRVHGFMSRV-ASKRLLMQRECGTFLLRFSESRMGALVISFTQPSVSVSRLSRISRCLVPFISCAGRLACCLQGSPINPRIVLQQFQLRSGRRSLSVKHSLVEVKWGGRCCIQA--EKGGMRCYGSLHDFVRQIPELKKLYPDIPKEEAF 438
BLAST of mRNA_F-serratus_M_contig1054.561.1 vs. uniprot
Match: D7FNY6_ECTSI (SH2 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY6_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 7.270e-13 Identity = 57/150 (38.00%), Postives = 71/150 (47.33%), Query Frame = 3 Query: 618 SLETFVIFSRRWWGQVMVTLSRIPKEWASVCPVKVHGFIARLDAERRLLKEGLPGVFLLRFSESRPGQLVLTFTCEASQAPGTEAPTNRSGSVRIAIQHSLVTAQPNGQWTLHYGNDKRSGLSYPSLRDLVNDKTILRTLYPKFAKEEAF 1067 S+ETF FSR WW +M TL I +WA PV VHGFI RL+ + L + G FLLRFSES PG+LV++ A HSLV G+ + N + + Y SL DLV LR LY E+ F Sbjct: 927 SVETFAKFSR-WWVPLMGTLGIIRNDWARTRPVFVHGFIGRLETDENLRRAR--GAFLLRFSESHPGKLVIS----------------------RAYHHSLVEVTEGGRCYMTV-NQQGTRREYESLHDLVTQNGQLRHLYQDIPMEQVF 1050
BLAST of mRNA_F-serratus_M_contig1054.561.1 vs. uniprot
Match: A0A5D6XJL3_9STRA (SH2 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJL3_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 8.360e-7 Identity = 46/151 (30.46%), Postives = 73/151 (48.34%), Query Frame = 3 Query: 618 SLETFVIFSRRW-WGQVMVTLSRIPKEWASVCPVKVHGFIARLDAERRLLKEGLPGVFLLRFSESRPGQLVLTFTCEASQAPGTEAPTNRSGSVRIAIQHSLVTAQPNGQWTLHYGNDKRSGLSYPSLRDLVNDKTILRTLYPKFAKEEAF 1067 SLE F F W W + R + WA P +HGF+++ A +L+ PG FLLRFSE+R +V+ + + +Q VT Q W + +D SG+++P+L+DL+ ++L+ L+P+ KE AF Sbjct: 793 SLEMFAAF---WHWFAPLTECIRYSRLWAFTQPRLLHGFLSK-GACVNMLQRAPPGTFLLRFSETRQRCVVIAYVPDDG-----------------CVQFVPVTCQHARGWYVALQDDA-SGVTFPTLQDLILSVSVLKFLFPQTPKELAF 921 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1054.561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1054.561.1 >prot_F-serratus_M_contig1054.561.1 ID=prot_F-serratus_M_contig1054.561.1|Name=mRNA_F-serratus_M_contig1054.561.1|organism=Fucus serratus male|type=polypeptide|length=138bp MVTLSRIPKEWASVCPVKVHGFIARLDAERRLLKEGLPGVFLLRFSESRPback to top mRNA from alignment at F-serratus_M_contig1054:251647..253866+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1054.561.1 ID=mRNA_F-serratus_M_contig1054.561.1|Name=mRNA_F-serratus_M_contig1054.561.1|organism=Fucus serratus male|type=mRNA|length=2220bp|location=Sequence derived from alignment at F-serratus_M_contig1054:251647..253866+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1054:251647..253866+ >mRNA_F-serratus_M_contig1054.561.1 ID=mRNA_F-serratus_M_contig1054.561.1|Name=mRNA_F-serratus_M_contig1054.561.1|organism=Fucus serratus male|type=CDS|length=828bp|location=Sequence derived from alignment at F-serratus_M_contig1054:251647..253866+ (Fucus serratus male)back to top |