mRNA_F-serratus_M_contig1044.453.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1044.453.1
Unique NamemRNA_F-serratus_M_contig1044.453.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1044.453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1044contigF-serratus_M_contig1044:237416..237928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size514
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928859.3945675-CDS-F-serratus_M_contig1044:237415..2377241622928859.3945675-CDS-F-serratus_M_contig1044:237415..237724Fucus serratus maleCDSF-serratus_M_contig1044 237416..237724 +
1690962604.501899-CDS-F-serratus_M_contig1044:237415..2377241690962604.501899-CDS-F-serratus_M_contig1044:237415..237724Fucus serratus maleCDSF-serratus_M_contig1044 237416..237724 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928859.4101427-UTR-F-serratus_M_contig1044:237724..2379281622928859.4101427-UTR-F-serratus_M_contig1044:237724..237928Fucus serratus maleUTRF-serratus_M_contig1044 237725..237928 +
1690962604.5100539-UTR-F-serratus_M_contig1044:237724..2379281690962604.5100539-UTR-F-serratus_M_contig1044:237724..237928Fucus serratus maleUTRF-serratus_M_contig1044 237725..237928 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1044.453.1prot_F-serratus_M_contig1044.453.1Fucus serratus malepolypeptideF-serratus_M_contig1044 237416..237724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1044.453.1

>prot_F-serratus_M_contig1044.453.1 ID=prot_F-serratus_M_contig1044.453.1|Name=mRNA_F-serratus_M_contig1044.453.1|organism=Fucus serratus male|type=polypeptide|length=103bp
FHERGRAGRNCKSAVCSRRPFVCYLCAFRLIVSVQHTGLRLLAYVASQSI
FALDWAWLDCSHHPLCWLSRLLVTARIDGGFLFPPKKSSMLTLFAGLCVF
IT*
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mRNA from alignment at F-serratus_M_contig1044:237416..237928+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1044.453.1 ID=mRNA_F-serratus_M_contig1044.453.1|Name=mRNA_F-serratus_M_contig1044.453.1|organism=Fucus serratus male|type=mRNA|length=513bp|location=Sequence derived from alignment at F-serratus_M_contig1044:237416..237928+ (Fucus serratus male)
TTTCACGAGCGTGGTCGTGCTGGGCGAAATTGCAAGAGTGCTGTTTGTTC
ACGGCGGCCATTTGTTTGCTATTTATGTGCCTTCCGTCTGATAGTTTCTG
TACAACATACGGGCTTGCGTCTTCTAGCATACGTTGCGTCCCAGAGTATC
TTTGCCCTTGACTGGGCTTGGCTTGACTGTAGTCATCATCCGCTATGTTG
GTTATCTCGGTTGTTGGTTACGGCACGGATCGATGGGGGGTTTTTATTTC
CCCCTAAAAAATCGTCAATGTTAACCCTGTTTGCCGGATTGTGTGTGTTC
ATCACGTAGGATGTTCAGTCGATCAATGTCATCAACTCGCCTACTAGTTT
CCGCTGTTGTTCATCTTTTGCGAATGGTTTCCCGAGTTTTGTCTTCCGAC
GTGCCCGTCTTTCTGCTTGAGTTGGGGAACGTTTCATAGCTGGATATCTA
CGGTCGTAGGCTCAATAAAAGAGCGCGCATTACTGATCGTACGAAATATT
AAAGGACTTATCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1044:237416..237928+

>mRNA_F-serratus_M_contig1044.453.1 ID=mRNA_F-serratus_M_contig1044.453.1|Name=mRNA_F-serratus_M_contig1044.453.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig1044:237416..237928+ (Fucus serratus male)
TTTCACGAGCGTGGTCGTGCTGGGCGAAATTGCAAGAGTGCTGTTTGTTC
ACGGCGGCCATTTGTTTGCTATTTATGTGCCTTCCGTCTGATAGTTTCTG
TACAACATACGGGCTTGCGTCTTCTAGCATACGTTGCGTCCCAGAGTATC
TTTGCCCTTGACTGGGCTTGGCTTGACTGTAGTCATCATCCGCTATGTTG
GTTATCTCGGTTGTTGGTTACGGCACGGATCGATGGGGGGTTTTTATTTC
CCCCTAAAAAATCGTCAATGTTAACCCTGTTTGCCGGATTGTGTGTGTTC
ATCACGTAGTTTCACGAGCGTGGTCGTGCTGGGCGAAATTGCAAGAGTGC
TGTTTGTTCACGGCGGCCATTTGTTTGCTATTTATGTGCCTTCCGTCTGA
TAGTTTCTGTACAACATACGGGCTTGCGTCTTCTAGCATACGTTGCGTCC
CAGAGTATCTTTGCCCTTGACTGGGCTTGGCTTGACTGTAGTCATCATCC
GCTATGTTGGTTATCTCGGTTGTTGGTTACGGCACGGATCGATGGGGGGT
TTTTATTTCCCCCTAAAAAATCGTCAATGTTAACCCTGTTTGCCGGATTG
TGTGTGTTCATCACGTAG
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