mRNA_F-serratus_M_contig1044.451.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1044.451.1
Unique NamemRNA_F-serratus_M_contig1044.451.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1044.451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1044contigF-serratus_M_contig1044:224176..229852 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons9
Model size675
Cds size672
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1044.451.1prot_F-serratus_M_contig1044.451.1Fucus serratus malepolypeptideF-serratus_M_contig1044 224179..229852 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928859.1783476-UTR-F-serratus_M_contig1044:224175..2241781622928859.1783476-UTR-F-serratus_M_contig1044:224175..224178Fucus serratus maleUTRF-serratus_M_contig1044 224176..224178 +
1690962604.3963351-UTR-F-serratus_M_contig1044:224175..2241781690962604.3963351-UTR-F-serratus_M_contig1044:224175..224178Fucus serratus maleUTRF-serratus_M_contig1044 224176..224178 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928859.2200065-CDS-F-serratus_M_contig1044:224178..2242481622928859.2200065-CDS-F-serratus_M_contig1044:224178..224248Fucus serratus maleCDSF-serratus_M_contig1044 224179..224248 +
1690962604.404307-CDS-F-serratus_M_contig1044:224178..2242481690962604.404307-CDS-F-serratus_M_contig1044:224178..224248Fucus serratus maleCDSF-serratus_M_contig1044 224179..224248 +
1622928859.2339034-CDS-F-serratus_M_contig1044:224873..2249451622928859.2339034-CDS-F-serratus_M_contig1044:224873..224945Fucus serratus maleCDSF-serratus_M_contig1044 224874..224945 +
1690962604.411757-CDS-F-serratus_M_contig1044:224873..2249451690962604.411757-CDS-F-serratus_M_contig1044:224873..224945Fucus serratus maleCDSF-serratus_M_contig1044 224874..224945 +
1622928859.2492018-CDS-F-serratus_M_contig1044:225574..2256461622928859.2492018-CDS-F-serratus_M_contig1044:225574..225646Fucus serratus maleCDSF-serratus_M_contig1044 225575..225646 +
1690962604.4236774-CDS-F-serratus_M_contig1044:225574..2256461690962604.4236774-CDS-F-serratus_M_contig1044:225574..225646Fucus serratus maleCDSF-serratus_M_contig1044 225575..225646 +
1622928859.2622182-CDS-F-serratus_M_contig1044:226275..2263471622928859.2622182-CDS-F-serratus_M_contig1044:226275..226347Fucus serratus maleCDSF-serratus_M_contig1044 226276..226347 +
1690962604.436848-CDS-F-serratus_M_contig1044:226275..2263471690962604.436848-CDS-F-serratus_M_contig1044:226275..226347Fucus serratus maleCDSF-serratus_M_contig1044 226276..226347 +
1622928859.2734632-CDS-F-serratus_M_contig1044:226975..2270471622928859.2734632-CDS-F-serratus_M_contig1044:226975..227047Fucus serratus maleCDSF-serratus_M_contig1044 226976..227047 +
1690962604.4543104-CDS-F-serratus_M_contig1044:226975..2270471690962604.4543104-CDS-F-serratus_M_contig1044:226975..227047Fucus serratus maleCDSF-serratus_M_contig1044 226976..227047 +
1622928859.2870378-CDS-F-serratus_M_contig1044:227674..2277461622928859.2870378-CDS-F-serratus_M_contig1044:227674..227746Fucus serratus maleCDSF-serratus_M_contig1044 227675..227746 +
1690962604.4648294-CDS-F-serratus_M_contig1044:227674..2277461690962604.4648294-CDS-F-serratus_M_contig1044:227674..227746Fucus serratus maleCDSF-serratus_M_contig1044 227675..227746 +
1622928859.3054433-CDS-F-serratus_M_contig1044:228373..2284451622928859.3054433-CDS-F-serratus_M_contig1044:228373..228445Fucus serratus maleCDSF-serratus_M_contig1044 228374..228445 +
1690962604.4741232-CDS-F-serratus_M_contig1044:228373..2284451690962604.4741232-CDS-F-serratus_M_contig1044:228373..228445Fucus serratus maleCDSF-serratus_M_contig1044 228374..228445 +
1622928859.321715-CDS-F-serratus_M_contig1044:229076..2291691622928859.321715-CDS-F-serratus_M_contig1044:229076..229169Fucus serratus maleCDSF-serratus_M_contig1044 229077..229169 +
1690962604.4836187-CDS-F-serratus_M_contig1044:229076..2291691690962604.4836187-CDS-F-serratus_M_contig1044:229076..229169Fucus serratus maleCDSF-serratus_M_contig1044 229077..229169 +
1622928859.3454187-CDS-F-serratus_M_contig1044:229775..2298521622928859.3454187-CDS-F-serratus_M_contig1044:229775..229852Fucus serratus maleCDSF-serratus_M_contig1044 229776..229852 +
1690962604.49417-CDS-F-serratus_M_contig1044:229775..2298521690962604.49417-CDS-F-serratus_M_contig1044:229775..229852Fucus serratus maleCDSF-serratus_M_contig1044 229776..229852 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1044.451.1

>prot_F-serratus_M_contig1044.451.1 ID=prot_F-serratus_M_contig1044.451.1|Name=mRNA_F-serratus_M_contig1044.451.1|organism=Fucus serratus male|type=polypeptide|length=224bp
MIPSELGGLSALKTLYLTNNQLSGMIPSELGGLSTLKTLHLFNNHLSGMI
PSELGGLSALKTLYLTNNQLSGMIPSELGGLSALETLNLSGNQLSGMIPS
ELGGLSALKTLYLTNNQLSGMIPSELDGLSALKTLDLSGNQLSGMIPSEL
DGLSALKTLDLSGNQLSGMIPSELGGLSALETLDLSGNQLSGKYVRGFWM
IPSELGGLSALKTLDLSGNQLSGK
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mRNA from alignment at F-serratus_M_contig1044:224176..229852+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1044.451.1 ID=mRNA_F-serratus_M_contig1044.451.1|Name=mRNA_F-serratus_M_contig1044.451.1|organism=Fucus serratus male|type=mRNA|length=5677bp|location=Sequence derived from alignment at F-serratus_M_contig1044:224176..229852+ (Fucus serratus male)
GGGATGATCCCATCAGAGCTTGGTGGATTGAGCGCTTTGAAGACACTTTA
TTTAACCAATAACCAGCTGAGCGGTAAGTATGTGCGAGGCTTTTGTGTTT
TCGTACTCGCGTGGTTGTACGTCGTTCGAAACAATCGGTTTTGTACTAAG
GGAAGCAACAAACGGCGATTACTTCATAAATCGGATATGGTATACAGTCT
TGCATTATGGTTTTGTCTGGCGGTCAGTTCCGCCTTTAATTCAGGGCCGC
AATTTCGTAGATGAAGATCTTAAGGCTCTTGAGCCAGTTTTTATTATGCT
TTTGTGTTTGTAAGAACGAATGCCATGGGGTATGGGTTGGAGACGAGCAG
TGTTTTTCAACGCCGGACGTTCTCGTTGTTTTGTCGGCGTCAAGCGAGCC
GCTATTTGTTTTGTTAATGGCCTTTGGCTTTCTCCCGCCTCTGTAAGGTA
TACCAAGGTGTTATATCTCAGCTTTGTTTAAGATGTTGTTTGCAAACGTC
GTTGGTCATGATTTATCGCGCGCCGTCTGTGTTGAATGCCCTGTAAAGTA
GCTCCTCATATTACACCGTGTACGATTTTTGTATTCTGCGTTTTGTGTCC
ACTCGCGACGCCTACGATCGTATATTTTTCAATGATTTGTTCATGATGTA
GTCATGGCAAGCCATATGCTTTTCGTTAAAAGCTCCCGTCGCATGCAGGG
ATGATCCCATCAGAGCTTGGTGGATTGAGCACTTTGAAGACACTTCATTT
GTTTAATAACCATCTGAGCGGTAAGTATGTGCGAGGATTTTGTGTTTTCG
TACTCGCTTGTTCGTACGTCGTTCGAAACAATCGATTTTGAACTAAGGGA
AGCATCAAACCGCCATTACTTCAAAGATCGGACGTGGTATACAGCCTTGC
ATTATGATTTGTCTGGCGGTCAGTTCCTCCTTTGGATTTCAGGGCCGCAA
TTTCGTAGATGAAGGTCTCAAGGCCCTTGAGCCAGTTTTTATTATGCTAT
TGTGTGTTTGAGAACGAATTTCATGGGATATGGGTTGGAGACGAGCAGCG
TTTTTCAACGCCGGAGGTTCTCGTTGTTTTGTCGGCGTCAAGGTACGCCG
CTGCTTGTTTTGGTAATGGCCTTTGGCTTTCTCCCGCCTCTGTAAGGTAT
ACCAAGGTGATATATCTCAGCTTTGTTTAAGATGTTGTTTGCAAACGTCG
TAGGTCATAATTCATCTGGCGTCGTCTGCGTTGAATGCCCTGTAAAGTAG
CTCCTCATATTACACCGTGTACGATTTTTGTATTCTGCGTTTTGTGTCCA
CTCGCGACGCCTACGATCGTATATTTTTCAATGATTTGTTCATTATGAAG
TCATGGCAAGCCATATGCTTTTCGTTAAACGCTTCCGTCGCATGGGCAGG
GATGATCCCATCAGAGCTTGGTGGATTGAGCGCTTTGAAGACACTTTATT
TAACCAATAACCAGCTGAGCGGTAAGTATGTGCGAGGCTTTTGTGTTTTC
GTACTCGCTTGTTCGTACGTCGTTCGAAACAATCGATTTTGAACTAAGGG
AAGCAACAAACGGACATTACTTCATAGATCGGACGTGGTATACAGCCTTG
CATTATGGTTTGTCTGGCGGTCAGTTCCTCCTTTGGATTTCAGGGCCGCA
TTTTCGTAGATGAAGATCTCAAGGCCCTTGAGCCTATTTTTATTTTACTG
TTGTGTTTGTAAGAATGAATGTCATGGGGTATGGGTTGGAGACGAGCAGC
GTTTTTCAACGCCGGACGTTCTCGTTGTTTTGTCGGCGTCAAGGTACGCC
GCTGTTTGTTTTGGTTATGACCTTTGGCTTTCTCCCGCCTTTATAAGGTA
TACCAAGGTGATATATCTCAGCTTTATTTAAGATGTTATTTCCAAACGTC
GTTGGTCATGATTCATCGGGTGTCGTCTGCGTTGAATGCCCTGTAAAGTA
GCTCCTCATATTACACCGTGTACGATTTTTGTATTCTGCGTTTTGTGTCC
ACTTGCGACGCCTACGATCGTATATTTTTCAATGATTTGTTCATTATGAA
GTCATGGCAAGCCATGTGCTTTTCGTTAAACGCTTCCGTCGCATGGGCAG
GGATGATCCCATCAGAGCTTGGTGGATTGAGCGCTTTGGAGACACTTAAT
TTGTCAGGAAACCAGCTGAGCGGTAAGTATGTGCGAGGATTTTGTGTTTT
CGTATTCGCTTGTTCGTACGTCGTTCGCAACAATTGATTTTGAACTAAGG
GAAGCAACAAATGGGCATTACTTCATAGATCTGGCGTGGTATACAGCCTT
GCATTATGGTTTGTCTGGCGGTCAGATCCGCCTTTGGATTTCAGGGCCGC
AATTTCGTAGATGAAGATCTCAAGGCCCTTGAGCCAGTTTTTATTATGCT
ATTGTGTTTGTAAAAATAATGCCATGGGGTATGGGTTGGAGACGAGCAGT
GTTTTTCAACGCCGGACGTTCTCGTTGTTTTGTCGGCGTCAAGGTACGCC
GCTGTTTGTTTTAGTAATGGCCTTTGGCTTTCTCCCGCCTCTGTAAGGTA
TACCAAGGTGTTATATCTCAGCTTTGTTTAAGATGTTGTTTGCAAACGTC
GTTGGTCATGATTTATCGCGCGCCGTCAGTGTTGAATGCCCTGTAAAGTA
GCTCCTCATATTACACCGTGTACGATTTTTGTATTCTGCGTTTTGTGTCC
ACTCGCGACGCCTACGATCGTATATTTTTCAATGATTTGTTCATTATGAA
GTCATGGCAAGCCATATGCTTTTCGTTAAACGCTTCCGTCGCATGTGCAG
GGATGATCCCATCAGAGCTTGGTGGATTGAGCGCTTTGAAGACACTTTAT
TTAACCAATAACCAGCTGAGCGGTAAGTATGTGCGAGGCTTTTGTGTTTT
CGTACTCACTTGTTCGTACGTCGTTCGAAACAATCAATTTTGAACTAAGG
GAAGCAACAAACGGGCATTACTTCATAGATCGGATGTGGTATACAGCCTT
GCATGATGGTTTGTCTGGCGGTCAGTTCCGCCTTTGGATTTCAGGGCCGC
AATTTCGTAGATGAAGATCTCAAGGCCCTTGAGCCAGTTTTTATTATGCT
ATTGTGCTTGTAAGAATGAATGTCATGGGGTATGGGTTGGAGACGAGCAG
TGTTTTTCAACGCCGGACGTTCTCGTTGTTTTGTCGGCGTCAAGGTACGC
CGATGTTTGTTTTGGTAATGGCCTTTGGCTTTCTCCCGCCTCTATAAGGT
ATACCAAGGTGAAATATCTCAGCTGTTTAAGTTGTTGTTTGCAAACGTCG
TTTGTCATGATTCATCGGGCGCCGTCTGCGTTGAATGCCCTGTAAAGTAG
CTCCTCATATTACACCGTGTACGATTTTTGTATTCTGCGTTTTGTGTCCA
CTCGCGACGCCTACGATCGTATATTTTTCAATGATTTGTTCATTATGAAG
TCATGGCAAGCCATATGCTTTTCGTTAAACGCTTCCGTCGCATGGGCAGG
GATGATCCCATCAGAGCTTGATGGATTGAGCGCTTTGAAGACACTTGATT
TGTCAGGAAACCAGCTGAGCGGTAAGTATGTGCGAGGCTTTTGTGTTTTC
GTACTCGCTTGTTCGTACGTCCTTCGAAACAATCGATTTTGAACTAATGG
AAGCAACAAACGGACATTACTTCATAGATCGGACGTGGTATACAGCCTTG
CATGATGGTTTGTCTGGCGGTCAGTTCGGCTTTTGGATTTCAGGGCCGCA
TTTTCGTAAATGAAGATCTTAAGGCCCTTGAGCCTATTTTTATTATGCTA
TTGTGTTTGTAAGAACGAATGTCATGGGGTATGGGTTGGAGACGAGCAGT
GTTTTTCAACGCCGGACGTTCTCGTTGTTTTGTCGGCGTCAAGGTACGCC
GCTGTTTGTTTTGGTAATGGCCTTTGGCTTTCTCCCGCCTCTATAAGGTA
TACCAAGGTGAAATATCTCAGCTGTTTAAGTTGTTGTTTGCAAACGTCGT
TTGTCATGATTCATCGGGCGCCGTCTGCGTTGAATGCCCTGTAAAGTAGC
TCCTCATATTACACCGTGTACGATTTTTGTATTCTGCGTTTTGTGTCCAC
TCGCGACGCCTACGATCGTATATTTTTCAATGATTTGTTCATGATGAAGT
CTTGGCAAGCCATATGCTTTTCGTTAAACGCTTCCGTCGCATGGGCAGGG
ATGATCCCATCAGAGCTTGATGGATTGAGCGCTTTGAAGACACTTGATTT
GTCAGGAAACCAGCTGAGCGGTAAGTATGTGCGAGGCTTTTGTGTTTTCG
TACTCGCTTGTTCGTACGTCCTTCGAAACAATCGATTTTGAACTAATGGA
AGCAACAAACGGACATTACTTCATAGATCGGACGTGGTATACAGCCTTGC
ATGATGGTTTGTCTGGCGGTCAGTTCGGCCTTTGGATTTCAGGGCCGCAT
TTTCGTAAATGAAGATCTCAAGGCCCTTGAGCCTATTTTTATTATGCTAT
TATTGTGTTTGTAAGAACGAATGTCATGGGGTATGGGTTGGAGACGAGCA
GTGTTTTTCAACGCCGGACGTTCTCGTTGTTTTGTCGGCGTCAAGGTACG
CCACTGTTTGTTTTGGTAATGGCCTTTGGCTTTCTTCCGCCTCTGTAAGG
TATACCAAGGTGATATATCTCAGCTTTGTTTAAGATGTTGTTTGCAAACG
TCGTAGGTCATGATTTATCGGGCGTCGTCTGCGTCGATTGCCCTGTAAAG
TAGCTCCTCATATTACACCGTGTACGATTTTTATATTCTGCGTTTTGTGT
CCACTCGCGACGCCTACGATCGTATATTTTCAATGATTTGTTCATTATGA
AGTCATGGCAAGCCATATGCTTTTCGTTAAACGCTCCCGTCGCATGTGCA
GGGATGATCCCATCAGAGCTTGGTGGATTGAGCGCTTTGGAGACACTTGA
TTTGTCAGGAAACCAGCTGAGCGGTAAGTATGTGCGAGGATTTTGTGTTT
TCGTACTCGCTTGTTCGTACGTCGTTCGAAACAATCGATTTTGAACTAAT
GGAAGCAACAAACGGGCATTACTTCATAGATCGGATGTGGTATACAGGCT
TGCATGATGGTTTGTCTGGCGGTCAGTTCCGCCTTTGGATTTCAGGGCCG
CAATTTCGTAGATGAAGATCTCAAGGCCCTTGAGCCAGTTTTTATTATGC
TATTGTGCTTGTAAGAACGAATGTCATGGGGTATGGGTTGGAGACGAGCA
GTGTTTTTCAACGCCGGACGTTCTCGTTGTTTTGTCGGCGTCAAGGTACG
CCGCTGTTTGTTTTGGTAATGGCCTTTGGCTTTCTCCCGCCTCTATAAGG
TATACCAAGGTGATATATCTCAGCTGTTTAAGTTGTTGTTTGCAAACGTC
GTCTGTCATGATTCATCGGGCGCCGTCTGCGTTGAATGCCCTGTAAAGTA
GCTCCTCATATTACACCGTGTACGATTTTTGTATTCTGCGTTTTGTGTCC
ACTCGCGACGCCTACGATCGTATATTTTTCAATGATTTGTTCATTATGAA
GTCTTGGCAAGCCATATGCTTTTCGTTAAACGCTTCCGTCGCATGGGCAG
GGATGATCCCATCAGAGCTTGGTGGATTGAGCGCTTTGAAGACACTTGAT
TTGTCAGGAAACCAGCTGAGCGGTAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1044:224176..229852+

>mRNA_F-serratus_M_contig1044.451.1 ID=mRNA_F-serratus_M_contig1044.451.1|Name=mRNA_F-serratus_M_contig1044.451.1|organism=Fucus serratus male|type=CDS|length=1344bp|location=Sequence derived from alignment at F-serratus_M_contig1044:224176..229852+ (Fucus serratus male)
ATGATCCCATCAGAGCTTGGTGGATTGAGCGCTTTGAAGACACTTTATTT
AACCAATAACCAGCTGAGCGATGATCCCATCAGAGCTTGGTGGATTGAGC
GCTTTGAAGACACTTTATTTAACCAATAACCAGCTGAGCGGGATGATCCC
ATCAGAGCTTGGTGGATTGAGCACTTTGAAGACACTTCATTTGTTTAATA
ACCATCTGAGCGGGATGATCCCATCAGAGCTTGGTGGATTGAGCACTTTG
AAGACACTTCATTTGTTTAATAACCATCTGAGCGGGATGATCCCATCAGA
GCTTGGTGGATTGAGCGCTTTGAAGACACTTTATTTAACCAATAACCAGC
TGAGCGGGATGATCCCATCAGAGCTTGGTGGATTGAGCGCTTTGAAGACA
CTTTATTTAACCAATAACCAGCTGAGCGGGATGATCCCATCAGAGCTTGG
TGGATTGAGCGCTTTGGAGACACTTAATTTGTCAGGAAACCAGCTGAGCG
GGATGATCCCATCAGAGCTTGGTGGATTGAGCGCTTTGGAGACACTTAAT
TTGTCAGGAAACCAGCTGAGCGGGATGATCCCATCAGAGCTTGGTGGATT
GAGCGCTTTGAAGACACTTTATTTAACCAATAACCAGCTGAGCGGGATGA
TCCCATCAGAGCTTGGTGGATTGAGCGCTTTGAAGACACTTTATTTAACC
AATAACCAGCTGAGCGGGATGATCCCATCAGAGCTTGATGGATTGAGCGC
TTTGAAGACACTTGATTTGTCAGGAAACCAGCTGAGCGGGATGATCCCAT
CAGAGCTTGATGGATTGAGCGCTTTGAAGACACTTGATTTGTCAGGAAAC
CAGCTGAGCGGGATGATCCCATCAGAGCTTGATGGATTGAGCGCTTTGAA
GACACTTGATTTGTCAGGAAACCAGCTGAGCGGGATGATCCCATCAGAGC
TTGATGGATTGAGCGCTTTGAAGACACTTGATTTGTCAGGAAACCAGCTG
AGCGGGATGATCCCATCAGAGCTTGGTGGATTGAGCGCTTTGGAGACACT
TGATTTGTCAGGAAACCAGCTGAGCGGTAAGTATGTGCGAGGATTTTGGA
TGATCCCATCAGAGCTTGGTGGATTGAGCGCTTTGGAGACACTTGATTTG
TCAGGAAACCAGCTGAGCGGTAAGTATGTGCGAGGATTTTGGATGATCCC
ATCAGAGCTTGGTGGATTGAGCGCTTTGAAGACACTTGATTTGTCAGGAA
ACCAGCTGAGCGGTAAGGGATGATCCCATCAGAGCTTGGTGGATTGAGCG
CTTTGAAGACACTTGATTTGTCAGGAAACCAGCTGAGCGGTAAG
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