mRNA_F-serratus_M_contig1042.440.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1042.440.1
Unique NamemRNA_F-serratus_M_contig1042.440.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1042.440.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 4.320e-21
Identity = 50/85 (58.82%), Postives = 62/85 (72.94%), Query Frame = 2
Query:    5 MTFVFTILSEALAPYAVGWDCWINRMGHVIVFMSMYIALLLKADVSSERISSQRLLAWVLVAAHVCMVLAALIEAMVMAPDVEPE 259
            + F F +LSE LAPYA  WD WI+R+GH++VF+SMY+ALLLK DVS ER SSQ +   VLVA HVCM+L  L+EA V A  +  E
Sbjct: 1411 IAFAFALLSEGLAPYASRWDTWISRVGHIVVFLSMYVALLLKVDVSDERASSQEVFESVLVAVHVCMILFVLVEAAVQAWSLREE 1495          
BLAST of mRNA_F-serratus_M_contig1042.440.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 4.440e-21
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 2
Query:    5 MTFVFTILSEALAPYAVGWDCWINRMGHVIVFMSMYIALLLKADVSSERISSQRLLAWVLVAAHVCMVLAALIEAMVM 238
            M F F ++SE LAPYA  WD W++RMGH +VF+SMY+ALLLK DVS+ER+ SQR+   VLVAAH CM+L  +IE +V+
Sbjct: 1966 MAFAFVVVSEGLAPYASRWDTWLSRMGHAVVFVSMYVALLLKVDVSNERVESQRVFEVVLVAAHACMILVIVIETVVL 2043          
BLAST of mRNA_F-serratus_M_contig1042.440.1 vs. uniprot
Match: A0A6H5KP34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP34_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 6.140e-21
Identity = 46/79 (58.23%), Postives = 61/79 (77.22%), Query Frame = 2
Query:    2 VMTFVFTILSEALAPYAVGWDCWINRMGHVIVFMSMYIALLLKADVSSERISSQRLLAWVLVAAHVCMVLAALIEAMVM 238
            +MT VF +LSEAL P A  WD W++R+ H +VFMS+Y+ALLLK DVS E+ SSQ++   VLVAAH CMVLA ++E +V+
Sbjct:   54 IMTVVFAVLSEALHPNAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSDEKRSSQKVFEAVLVAAHACMVLAVVVETIVL 132          
BLAST of mRNA_F-serratus_M_contig1042.440.1 vs. uniprot
Match: D8LH65_ECTSI (Polymorphic outer membrane protein G/I family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH65_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 6.000e-20
Identity = 47/78 (60.26%), Postives = 62/78 (79.49%), Query Frame = 2
Query:    5 MTFVFTILSEALAPYAVGWDCWINRMGHVIVFMSMYIALLLKADVSSERISSQRLLAWVLVAAHVCMVLAALIEAMVM 238
            + F F I+SE L+PY+  WD W+NRMGHV+VF+SM++ALLLK DV+ E  SSQ++   VLVAAHVCMVL  +IEA+V+
Sbjct:  597 IAFAFVIVSEVLSPYSSKWDRWVNRMGHVVVFVSMFVALLLKVDVADEDASSQKVFESVLVAAHVCMVLVVVIEAIVL 674          
BLAST of mRNA_F-serratus_M_contig1042.440.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 6.550e-20
Identity = 45/79 (56.96%), Postives = 63/79 (79.75%), Query Frame = 2
Query:    2 VMTFVFTILSEALAPYAVGWDCWINRMGHVIVFMSMYIALLLKADVSSERISSQRLLAWVLVAAHVCMVLAALIEAMVM 238
            +MT VF +LSEAL PYA  WD W++R+ H +VFMS+Y+ALLLK DVS+E+ SSQ++   VLVAAH CM+LA ++E +++
Sbjct:  915 IMTVVFAVLSEALRPYAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSNEKGSSQKVFEAVLVAAHACMILAVVVETILL 993          
BLAST of mRNA_F-serratus_M_contig1042.440.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 7.170e-20
Identity = 45/79 (56.96%), Postives = 63/79 (79.75%), Query Frame = 2
Query:    2 VMTFVFTILSEALAPYAVGWDCWINRMGHVIVFMSMYIALLLKADVSSERISSQRLLAWVLVAAHVCMVLAALIEAMVM 238
            +MT VF +LSEAL PYA  WD W++R+ H +VFMS+Y+ALLLK DVS+E+ SSQ++   VLVAAH CM+LA ++E +++
Sbjct: 2653 IMTVVFAVLSEALRPYAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSNEKGSSQKVFEAVLVAAHACMILAVVVETILL 2731          
BLAST of mRNA_F-serratus_M_contig1042.440.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 9.150e-20
Identity = 48/85 (56.47%), Postives = 60/85 (70.59%), Query Frame = 2
Query:    5 MTFVFTILSEALAPYAVGWDCWINRMGHVIVFMSMYIALLLKADVSSERISSQRLLAWVLVAAHVCMVLAALIEAMVMAPDVEPE 259
            M F F ++SE LAP+A  WD W+NR GH +VF+SMYIALLLK DVS ER  SQR+   VLVAAH CM+LA + E  V+   ++ E
Sbjct: 1155 MAFAFVMVSEGLAPFASKWDAWLNRTGHTVVFVSMYIALLLKVDVSGERAGSQRVYEIVLVAAHACMILAVMTETFVLTWSLKVE 1239          
BLAST of mRNA_F-serratus_M_contig1042.440.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.040e-18
Identity = 53/96 (55.21%), Postives = 66/96 (68.75%), Query Frame = 2
Query:   14 VFTILSEALAPYAVGWDCWINRMGHVIVFMSMYIALLLKADVSSERISSQRLLAWVLVAAHVCMVLAALIEAMVMAPDVEPELDG-----SSFGKG 286
            VF ++SEALAPYA  WD W+ RMGH +V +SMY+ALLLK DVS ER SSQR+   +LVAAHVCMV   L+E ++ A  +  E  G     SSF +G
Sbjct:  879 VFAMISEALAPYASRWDTWLCRMGHAVVAVSMYVALLLKVDVSDERASSQRVFESLLVAAHVCMVGVVLLEVIMEAISLWVEKRGQQPASSSFRRG 974          
BLAST of mRNA_F-serratus_M_contig1042.440.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 2.710e-18
Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = 2
Query:    5 MTFVFTILSEALAPYAVGWDCWINRMGHVIVFMSMYIALLLKADVSSERISSQRLLAWVLVAAHVCMVLAALIEAMVMA 241
            M F F +LSEA++PY+  W+ W+NRMGHV+V +SMY+ALLLK DVS ER  SQ +   VLV  H CM+L+ ++E  V+A
Sbjct: 1326 MAFFFALLSEAISPYSSRWETWVNRMGHVVVAVSMYVALLLKVDVSDERADSQSVFEAVLVTVHACMILSVVVETFVVA 1404          
BLAST of mRNA_F-serratus_M_contig1042.440.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 3.630e-18
Identity = 44/80 (55.00%), Postives = 59/80 (73.75%), Query Frame = 2
Query:    2 VMTFVFTILSEALAPYAVGWDCWINRMGHVIVFMSMYIALLLKADVSSERISSQRLLAWVLVAAHVCMVLAALIEAMVMA 241
            V+   FTILSEAL PY+  WD W +RMGH++V +SMY+ALLLK DVS ER SSQR+   +LVA H CMV   ++E ++++
Sbjct: 1104 VIAVAFTILSEALDPYSSRWDAWTSRMGHMVVLVSMYVALLLKVDVSDERASSQRVFEAILVAVHACMVTLVVVETIILS 1183          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1042.440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K0E9_9PHAE4.320e-2158.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G5Y7_ECTSI4.440e-2160.26Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5KP34_9PHAE6.140e-2158.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH65_ECTSI6.000e-2060.26Polymorphic outer membrane protein G/I family prot... [more]
D7FHH1_ECTSI6.550e-2056.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHG7_ECTSI7.170e-2056.96LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G301_ECTSI9.150e-2056.47Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7G2Z8_ECTSI1.040e-1855.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2X5_ECTSI2.710e-1854.43Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D7FTL7_ECTSI3.630e-1855.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1042contigF-serratus_M_contig1042:217450..218098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue2.1e-19
Seed eggNOG ortholog2880.D8LHQ8
Hectar predicted targeting categorysignal peptide
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size618
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1042.440.1prot_F-serratus_M_contig1042.440.1Fucus serratus malepolypeptideF-serratus_M_contig1042 217665..218094 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928857.8826385-UTR-F-serratus_M_contig1042:217449..2176641622928857.8826385-UTR-F-serratus_M_contig1042:217449..217664Fucus serratus maleUTRF-serratus_M_contig1042 217450..217664 -
1690962603.8502538-UTR-F-serratus_M_contig1042:217449..2176641690962603.8502538-UTR-F-serratus_M_contig1042:217449..217664Fucus serratus maleUTRF-serratus_M_contig1042 217450..217664 -
1622928857.9349105-UTR-F-serratus_M_contig1042:218094..2180981622928857.9349105-UTR-F-serratus_M_contig1042:218094..218098Fucus serratus maleUTRF-serratus_M_contig1042 218095..218098 -
1690962603.89735-UTR-F-serratus_M_contig1042:218094..2180981690962603.89735-UTR-F-serratus_M_contig1042:218094..218098Fucus serratus maleUTRF-serratus_M_contig1042 218095..218098 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928857.898258-CDS-F-serratus_M_contig1042:217664..2178271622928857.898258-CDS-F-serratus_M_contig1042:217664..217827Fucus serratus maleCDSF-serratus_M_contig1042 217665..217827 -
1690962603.8732462-CDS-F-serratus_M_contig1042:217664..2178271690962603.8732462-CDS-F-serratus_M_contig1042:217664..217827Fucus serratus maleCDSF-serratus_M_contig1042 217665..217827 -
1622928857.9164662-CDS-F-serratus_M_contig1042:217858..2180941622928857.9164662-CDS-F-serratus_M_contig1042:217858..218094Fucus serratus maleCDSF-serratus_M_contig1042 217859..218094 -
1690962603.8857112-CDS-F-serratus_M_contig1042:217858..2180941690962603.8857112-CDS-F-serratus_M_contig1042:217858..218094Fucus serratus maleCDSF-serratus_M_contig1042 217859..218094 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1042.440.1

>prot_F-serratus_M_contig1042.440.1 ID=prot_F-serratus_M_contig1042.440.1|Name=mRNA_F-serratus_M_contig1042.440.1|organism=Fucus serratus male|type=polypeptide|length=133bp
MTFVFTILSEALAPYAVGWDCWINRMGHVIVFMSMYIALLLKADVSSERI
SSQRLLAWVLVAAHVCMVLAALIEAMVMAPDVEPELDGSSFGKGMVLRCM
VCHRLMGLKHVIVMPRMNQSRRDRSKQVEPRA*
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mRNA from alignment at F-serratus_M_contig1042:217450..218098-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1042.440.1 ID=mRNA_F-serratus_M_contig1042.440.1|Name=mRNA_F-serratus_M_contig1042.440.1|organism=Fucus serratus male|type=mRNA|length=649bp|location=Sequence derived from alignment at F-serratus_M_contig1042:217450..218098- (Fucus serratus male)
CGTCATGACTTTCGTTTTTACTATATTGTCGGAAGCATTAGCCCCGTACG CTGTAGGGTGGGACTGTTGGATCAATCGAATGGGGCACGTGATCGTGTTC ATGAGCATGTATATAGCTCTTCTTTTGAAGGCGGACGTATCCAGTGAGCG CATCAGCAGCCAGAGGCTATTGGCGTGGGTGCTTGTCGCTGCACACGTCT GCATGGTGCTCGCTGCGTTAATCGAGGCCATGGTCATGGCGTTTTCGGTT ACCACAACAAGGGTGGACGAGCCCAGACGTAGAGCCGGAGCTCGACGGCA GTTCATTTGGCAAAGGGATGGTCTTAAGATGCATGGTATGCCATCGTTTG ATGGGATTGAAGCATGTAATAGTGATGCCGAGGATGAATCAAAGTCGTAG GGACCGATCGAAGCAAGTCGAGCCTAGAGCGTGAGAGAGAATAGGATACT CTTCACACCTGCCAGTTATTTCTTCAGTGCGAAGGTAAACATGTGATATC TGACATGAAATGAGTCTTGACTACTTACAGTACTTTTAAAACGTTTTTTC GTTGTAGTCCCTATGTTTACTACATTTTCGACGATATAAATTACCACTCC AAGGTTGTGCCGTCGAAGCGGGGATCTTTGGGTTATATGAATTGTTCGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1042:217450..218098-

>mRNA_F-serratus_M_contig1042.440.1 ID=mRNA_F-serratus_M_contig1042.440.1|Name=mRNA_F-serratus_M_contig1042.440.1|organism=Fucus serratus male|type=CDS|length=798bp|location=Sequence derived from alignment at F-serratus_M_contig1042:217450..218098- (Fucus serratus male)
ATGACTTTCGTTTTTACTATATTGTCGGAAGCATTAGCCCCGTACGCTGT
AGGGTGGGACTGTTGGATCAATCGAATGGGGCACGTGATCGTGTTCATGA
GCATGTATATAGCTCTTCTTTTGAAGGCGGACGTATCCAGTGAGCGCATC
AGCAGCCAGAGGCTATTGGCGTGGGTGCTTGTCGCTGCACACGTCTGCAT
GGTGCTCGCTGCGTTAATCGAGGCCATGGTCATGGCATGACTTTCGTTTT
TACTATATTGTCGGAAGCATTAGCCCCGTACGCTGTAGGGTGGGACTGTT
GGATCAATCGAATGGGGCACGTGATCGTGTTCATGAGCATGTATATAGCT
CTTCTTTTGAAGGCGGACGTATCCAGTGAGCGCATCAGCAGCCAGAGGCT
ATTGGCGTGGGTGCTTGTCGCTGCACACGTCTGCATGGTGCTCGCTGCGT
TAATCGAGGCCATGGTCATGGCCCCAGACGTAGAGCCGGAGCTCGACGGC
AGTTCATTTGGCAAAGGGATGGTCTTAAGATGCATGGTATGCCATCGTTT
GATGGGATTGAAGCATGTAATAGTGATGCCGAGGATGAATCAAAGTCGTA
GGGACCGATCGAAGCAAGTCGAGCCTAGAGCGTGACCCAGACGTAGAGCC
GGAGCTCGACGGCAGTTCATTTGGCAAAGGGATGGTCTTAAGATGCATGG
TATGCCATCGTTTGATGGGATTGAAGCATGTAATAGTGATGCCGAGGATG
AATCAAAGTCGTAGGGACCGATCGAAGCAAGTCGAGCCTAGAGCGTGA
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