mRNA_F-serratus_M_contig1042.440.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1042.440.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE) HSP 1 Score: 100 bits (250), Expect = 4.320e-21 Identity = 50/85 (58.82%), Postives = 62/85 (72.94%), Query Frame = 2 Query: 5 MTFVFTILSEALAPYAVGWDCWINRMGHVIVFMSMYIALLLKADVSSERISSQRLLAWVLVAAHVCMVLAALIEAMVMAPDVEPE 259 + F F +LSE LAPYA WD WI+R+GH++VF+SMY+ALLLK DVS ER SSQ + VLVA HVCM+L L+EA V A + E Sbjct: 1411 IAFAFALLSEGLAPYASRWDTWISRVGHIVVFLSMYVALLLKVDVSDERASSQEVFESVLVAVHVCMILFVLVEAAVQAWSLREE 1495
BLAST of mRNA_F-serratus_M_contig1042.440.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI) HSP 1 Score: 100 bits (250), Expect = 4.440e-21 Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 2 Query: 5 MTFVFTILSEALAPYAVGWDCWINRMGHVIVFMSMYIALLLKADVSSERISSQRLLAWVLVAAHVCMVLAALIEAMVM 238 M F F ++SE LAPYA WD W++RMGH +VF+SMY+ALLLK DVS+ER+ SQR+ VLVAAH CM+L +IE +V+ Sbjct: 1966 MAFAFVVVSEGLAPYASRWDTWLSRMGHAVVFVSMYVALLLKVDVSNERVESQRVFEVVLVAAHACMILVIVIETVVL 2043
BLAST of mRNA_F-serratus_M_contig1042.440.1 vs. uniprot
Match: A0A6H5KP34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP34_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 6.140e-21 Identity = 46/79 (58.23%), Postives = 61/79 (77.22%), Query Frame = 2 Query: 2 VMTFVFTILSEALAPYAVGWDCWINRMGHVIVFMSMYIALLLKADVSSERISSQRLLAWVLVAAHVCMVLAALIEAMVM 238 +MT VF +LSEAL P A WD W++R+ H +VFMS+Y+ALLLK DVS E+ SSQ++ VLVAAH CMVLA ++E +V+ Sbjct: 54 IMTVVFAVLSEALHPNAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSDEKRSSQKVFEAVLVAAHACMVLAVVVETIVL 132
BLAST of mRNA_F-serratus_M_contig1042.440.1 vs. uniprot
Match: D8LH65_ECTSI (Polymorphic outer membrane protein G/I family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH65_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 6.000e-20 Identity = 47/78 (60.26%), Postives = 62/78 (79.49%), Query Frame = 2 Query: 5 MTFVFTILSEALAPYAVGWDCWINRMGHVIVFMSMYIALLLKADVSSERISSQRLLAWVLVAAHVCMVLAALIEAMVM 238 + F F I+SE L+PY+ WD W+NRMGHV+VF+SM++ALLLK DV+ E SSQ++ VLVAAHVCMVL +IEA+V+ Sbjct: 597 IAFAFVIVSEVLSPYSSKWDRWVNRMGHVVVFVSMFVALLLKVDVADEDASSQKVFESVLVAAHVCMVLVVVIEAIVL 674
BLAST of mRNA_F-serratus_M_contig1042.440.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 6.550e-20 Identity = 45/79 (56.96%), Postives = 63/79 (79.75%), Query Frame = 2 Query: 2 VMTFVFTILSEALAPYAVGWDCWINRMGHVIVFMSMYIALLLKADVSSERISSQRLLAWVLVAAHVCMVLAALIEAMVM 238 +MT VF +LSEAL PYA WD W++R+ H +VFMS+Y+ALLLK DVS+E+ SSQ++ VLVAAH CM+LA ++E +++ Sbjct: 915 IMTVVFAVLSEALRPYAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSNEKGSSQKVFEAVLVAAHACMILAVVVETILL 993
BLAST of mRNA_F-serratus_M_contig1042.440.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 7.170e-20 Identity = 45/79 (56.96%), Postives = 63/79 (79.75%), Query Frame = 2 Query: 2 VMTFVFTILSEALAPYAVGWDCWINRMGHVIVFMSMYIALLLKADVSSERISSQRLLAWVLVAAHVCMVLAALIEAMVM 238 +MT VF +LSEAL PYA WD W++R+ H +VFMS+Y+ALLLK DVS+E+ SSQ++ VLVAAH CM+LA ++E +++ Sbjct: 2653 IMTVVFAVLSEALRPYAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSNEKGSSQKVFEAVLVAAHACMILAVVVETILL 2731
BLAST of mRNA_F-serratus_M_contig1042.440.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI) HSP 1 Score: 97.1 bits (240), Expect = 9.150e-20 Identity = 48/85 (56.47%), Postives = 60/85 (70.59%), Query Frame = 2 Query: 5 MTFVFTILSEALAPYAVGWDCWINRMGHVIVFMSMYIALLLKADVSSERISSQRLLAWVLVAAHVCMVLAALIEAMVMAPDVEPE 259 M F F ++SE LAP+A WD W+NR GH +VF+SMYIALLLK DVS ER SQR+ VLVAAH CM+LA + E V+ ++ E Sbjct: 1155 MAFAFVMVSEGLAPFASKWDAWLNRTGHTVVFVSMYIALLLKVDVSGERAGSQRVYEIVLVAAHACMILAVMTETFVLTWSLKVE 1239
BLAST of mRNA_F-serratus_M_contig1042.440.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI) HSP 1 Score: 94.0 bits (232), Expect = 1.040e-18 Identity = 53/96 (55.21%), Postives = 66/96 (68.75%), Query Frame = 2 Query: 14 VFTILSEALAPYAVGWDCWINRMGHVIVFMSMYIALLLKADVSSERISSQRLLAWVLVAAHVCMVLAALIEAMVMAPDVEPELDG-----SSFGKG 286 VF ++SEALAPYA WD W+ RMGH +V +SMY+ALLLK DVS ER SSQR+ +LVAAHVCMV L+E ++ A + E G SSF +G Sbjct: 879 VFAMISEALAPYASRWDTWLCRMGHAVVAVSMYVALLLKVDVSDERASSQRVFESLLVAAHVCMVGVVLLEVIMEAISLWVEKRGQQPASSSFRRG 974
BLAST of mRNA_F-serratus_M_contig1042.440.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI) HSP 1 Score: 92.8 bits (229), Expect = 2.710e-18 Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = 2 Query: 5 MTFVFTILSEALAPYAVGWDCWINRMGHVIVFMSMYIALLLKADVSSERISSQRLLAWVLVAAHVCMVLAALIEAMVMA 241 M F F +LSEA++PY+ W+ W+NRMGHV+V +SMY+ALLLK DVS ER SQ + VLV H CM+L+ ++E V+A Sbjct: 1326 MAFFFALLSEAISPYSSRWETWVNRMGHVVVAVSMYVALLLKVDVSDERADSQSVFEAVLVTVHACMILSVVVETFVVA 1404
BLAST of mRNA_F-serratus_M_contig1042.440.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI) HSP 1 Score: 92.4 bits (228), Expect = 3.630e-18 Identity = 44/80 (55.00%), Postives = 59/80 (73.75%), Query Frame = 2 Query: 2 VMTFVFTILSEALAPYAVGWDCWINRMGHVIVFMSMYIALLLKADVSSERISSQRLLAWVLVAAHVCMVLAALIEAMVMA 241 V+ FTILSEAL PY+ WD W +RMGH++V +SMY+ALLLK DVS ER SSQR+ +LVA H CMV ++E ++++ Sbjct: 1104 VIAVAFTILSEALDPYSSRWDAWTSRMGHMVVLVSMYVALLLKVDVSDERASSQRVFEAILVAVHACMVTLVVVETIILS 1183 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1042.440.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1042.440.1 >prot_F-serratus_M_contig1042.440.1 ID=prot_F-serratus_M_contig1042.440.1|Name=mRNA_F-serratus_M_contig1042.440.1|organism=Fucus serratus male|type=polypeptide|length=133bp MTFVFTILSEALAPYAVGWDCWINRMGHVIVFMSMYIALLLKADVSSERIback to top mRNA from alignment at F-serratus_M_contig1042:217450..218098- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1042.440.1 ID=mRNA_F-serratus_M_contig1042.440.1|Name=mRNA_F-serratus_M_contig1042.440.1|organism=Fucus serratus male|type=mRNA|length=649bp|location=Sequence derived from alignment at F-serratus_M_contig1042:217450..218098- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1042:217450..218098- >mRNA_F-serratus_M_contig1042.440.1 ID=mRNA_F-serratus_M_contig1042.440.1|Name=mRNA_F-serratus_M_contig1042.440.1|organism=Fucus serratus male|type=CDS|length=798bp|location=Sequence derived from alignment at F-serratus_M_contig1042:217450..218098- (Fucus serratus male)back to top |