mRNA_F-serratus_M_contig1041.435.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1041.435.1
Unique NamemRNA_F-serratus_M_contig1041.435.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1041.435.1 vs. uniprot
Match: D7FHG8_ECTSI (Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHG8_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 2.620e-47
Identity = 76/87 (87.36%), Postives = 82/87 (94.25%), Query Frame = 1
Query:   19 STPIRQSSDMSQEMVQEAVEIVTMSVDKFINVKNYEAAAQLIKHSMDKKFGASWHCAIGEGFGFGVTYQQRNMIYVFYGQIGVLTFK 279
            S P+ +SSDM  E+VQEAVEIVTMSVDKFINVKNYEAAAQLIK+SMDKKFGASWHCAIGEGFGF +TYQQRNMIY+FYGQIGVLTFK
Sbjct:   47 SKPLIKSSDMPPEIVQEAVEIVTMSVDKFINVKNYEAAAQLIKNSMDKKFGASWHCAIGEGFGFEITYQQRNMIYIFYGQIGVLTFK 133          
BLAST of mRNA_F-serratus_M_contig1041.435.1 vs. uniprot
Match: A0A836CH10_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH10_9STRA)

HSP 1 Score: 143 bits (360), Expect = 1.670e-42
Identity = 65/87 (74.71%), Postives = 80/87 (91.95%), Query Frame = 1
Query:   19 STPIRQSSDMSQEMVQEAVEIVTMSVDKFINVKNYEAAAQLIKHSMDKKFGASWHCAIGEGFGFGVTYQQRNMIYVFYGQIGVLTFK 279
            S P+ +S+DMS EM  EA+E++TM+VDKFINVKNYEAAAQLIK+S+DKKFGASWHCAIGEGFGF +TYQ+RNMIY++YGQ+GVL +K
Sbjct:   19 SKPVVKSADMSPEMSSEAIEVMTMAVDKFINVKNYEAAAQLIKNSLDKKFGASWHCAIGEGFGFEITYQKRNMIYMYYGQLGVLAYK 105          
BLAST of mRNA_F-serratus_M_contig1041.435.1 vs. uniprot
Match: A0A812X8N6_SYMMI (Dynein light chain n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812X8N6_SYMMI)

HSP 1 Score: 122 bits (307), Expect = 3.700e-34
Identity = 56/82 (68.29%), Postives = 68/82 (82.93%), Query Frame = 1
Query:   34 QSSDMSQEMVQEAVEIVTMSVDKFINVKNYEAAAQLIKHSMDKKFGASWHCAIGEGFGFGVTYQQRNMIYVFYGQIGVLTFK 279
            QS DMS EM  E++EI+TM+VDK    KNYEAAAQLIK +MDKKFGA+WHC IGEGFGF +TYQ +NM+YV+YG IG+L +K
Sbjct:   45 QSVDMSMEMSMESMEIITMAVDKHQATKNYEAAAQLIKTTMDKKFGAAWHCVIGEGFGFEITYQAKNMVYVYYGSIGILAYK 126          
BLAST of mRNA_F-serratus_M_contig1041.435.1 vs. uniprot
Match: G4YEJ5_PHYSP (Dynein light chain n=22 Tax=Oomycota TaxID=4762 RepID=G4YEJ5_PHYSP)

HSP 1 Score: 117 bits (294), Expect = 2.130e-32
Identity = 53/87 (60.92%), Postives = 70/87 (80.46%), Query Frame = 1
Query:   19 STPIRQSSDMSQEMVQEAVEIVTMSVDKFINVKNYEAAAQLIKHSMDKKFGASWHCAIGEGFGFGVTYQQRNMIYVFYGQIGVLTFK 279
            S P  + +DM+ E+  E +EI+TM+ DK + VKNYEAAAQLIK SMDKKFG+SWHC IGEG+GF ++YQQR+M+Y++ G IGVL +K
Sbjct:   23 SRPHLKHNDMTAEVCTETIEIITMACDKHVPVKNYEAAAQLIKQSMDKKFGSSWHCFIGEGYGFDISYQQRHMLYLYVGDIGVLVYK 109          
BLAST of mRNA_F-serratus_M_contig1041.435.1 vs. uniprot
Match: A0A067BR93_SAPPC (Dynein light chain n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BR93_SAPPC)

HSP 1 Score: 117 bits (294), Expect = 2.130e-32
Identity = 52/87 (59.77%), Postives = 71/87 (81.61%), Query Frame = 1
Query:   19 STPIRQSSDMSQEMVQEAVEIVTMSVDKFINVKNYEAAAQLIKHSMDKKFGASWHCAIGEGFGFGVTYQQRNMIYVFYGQIGVLTFK 279
            S P  + +DM+ E+  E VEI+TM+VDK + +KNYEAAAQLIK SMDKKFG+ WHC IGEG+GF ++YQQR+M+Y++ G+IG+L +K
Sbjct:   23 SRPFIKHNDMTAEVCTETVEIITMAVDKHVPLKNYEAAAQLIKQSMDKKFGSFWHCFIGEGYGFDISYQQRHMLYMYVGEIGILVYK 109          
BLAST of mRNA_F-serratus_M_contig1041.435.1 vs. uniprot
Match: A0A7S2FKD5_9STRA (Dynein light chain n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FKD5_9STRA)

HSP 1 Score: 117 bits (293), Expect = 2.760e-32
Identity = 50/76 (65.79%), Postives = 65/76 (85.53%), Query Frame = 1
Query:   52 QEMVQEAVEIVTMSVDKFINVKNYEAAAQLIKHSMDKKFGASWHCAIGEGFGFGVTYQQRNMIYVFYGQIGVLTFK 279
            QE VQEA+E+ TM++DKFI+ K+Y+ AA+ IK  MDKKFG  WHCAIGEGFGF VTYQQ+NM+Y++YGQ+G+L +K
Sbjct:   31 QECVQEAIEVTTMAMDKFISKKDYDGAAKAIKDQMDKKFGTLWHCAIGEGFGFDVTYQQKNMMYIYYGQVGILIYK 106          
BLAST of mRNA_F-serratus_M_contig1041.435.1 vs. uniprot
Match: A0A8K1FE69_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FE69_PYTOL)

HSP 1 Score: 117 bits (292), Expect = 4.410e-32
Identity = 52/87 (59.77%), Postives = 71/87 (81.61%), Query Frame = 1
Query:   19 STPIRQSSDMSQEMVQEAVEIVTMSVDKFINVKNYEAAAQLIKHSMDKKFGASWHCAIGEGFGFGVTYQQRNMIYVFYGQIGVLTFK 279
            S P  + +DM+ E+  E +EI+TM+ DK + VKNYEAAAQLIK SMDKKFG+SWHC +GEG+GF V+YQQR+M++++ G+IGVL +K
Sbjct:   24 SRPHLKHNDMTAEVCTETMEIITMACDKHVPVKNYEAAAQLIKQSMDKKFGSSWHCFVGEGYGFDVSYQQRHMLFIYVGEIGVLVYK 110          
BLAST of mRNA_F-serratus_M_contig1041.435.1 vs. uniprot
Match: A0A0N7L6I6_PLAHL (Dynein light chain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L6I6_PLAHL)

HSP 1 Score: 117 bits (292), Expect = 1.000e-31
Identity = 53/87 (60.92%), Postives = 71/87 (81.61%), Query Frame = 1
Query:   19 STPIRQSSDMSQEMVQEAVEIVTMSVDKFINVKNYEAAAQLIKHSMDKKFGASWHCAIGEGFGFGVTYQQRNMIYVFYGQIGVLTFK 279
            S P  + +DM+ E+  E +EI+TM+ DK + +KNYEAAAQLIK SMDKKFG+SWHC IGEG+GF V+YQQR+M+Y++ G+IGVL +K
Sbjct:   52 SRPHLKHNDMTAEVCTETLEIITMACDKHVPLKNYEAAAQLIKQSMDKKFGSSWHCFIGEGYGFDVSYQQRHMLYMYVGEIGVLVYK 138          
BLAST of mRNA_F-serratus_M_contig1041.435.1 vs. uniprot
Match: D0NDR6_PHYIT (Dynein light chain n=5 Tax=Phytophthora TaxID=4783 RepID=D0NDR6_PHYIT)

HSP 1 Score: 115 bits (289), Expect = 1.230e-31
Identity = 51/87 (58.62%), Postives = 70/87 (80.46%), Query Frame = 1
Query:   19 STPIRQSSDMSQEMVQEAVEIVTMSVDKFINVKNYEAAAQLIKHSMDKKFGASWHCAIGEGFGFGVTYQQRNMIYVFYGQIGVLTFK 279
            S P  + +DM+ E+  E +EI+TM+ DK + +KNYE AAQLIK SMDKKFG+SWHC IGEG+GF ++YQQR+M+Y++ G+IGVL +K
Sbjct:   23 SRPHLKHNDMTAEVCTETIEIITMACDKHVPMKNYETAAQLIKQSMDKKFGSSWHCFIGEGYGFDISYQQRHMLYLYVGEIGVLVYK 109          
BLAST of mRNA_F-serratus_M_contig1041.435.1 vs. uniprot
Match: A0A2D4CBJ0_PYTIN (Dynein light chain n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CBJ0_PYTIN)

HSP 1 Score: 115 bits (288), Expect = 1.790e-31
Identity = 52/87 (59.77%), Postives = 70/87 (80.46%), Query Frame = 1
Query:   19 STPIRQSSDMSQEMVQEAVEIVTMSVDKFINVKNYEAAAQLIKHSMDKKFGASWHCAIGEGFGFGVTYQQRNMIYVFYGQIGVLTFK 279
            S P  + +DM+ E+  E +EI+TM+ DK + +KNYEAAAQLIK SMDKKFGASWHC +GEG+GF V+YQQR+M++++ G IGVL +K
Sbjct:   24 SKPHLKHNDMTAEVCTETMEIITMACDKHVPLKNYEAAAQLIKQSMDKKFGASWHCFVGEGYGFDVSYQQRHMLFIYVGXIGVLIYK 110          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1041.435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHG8_ECTSI2.620e-4787.36Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A836CH10_9STRA1.670e-4274.71Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A812X8N6_SYMMI3.700e-3468.29Dynein light chain n=1 Tax=Symbiodinium microadria... [more]
G4YEJ5_PHYSP2.130e-3260.92Dynein light chain n=22 Tax=Oomycota TaxID=4762 Re... [more]
A0A067BR93_SAPPC2.130e-3259.77Dynein light chain n=2 Tax=Saprolegnia TaxID=4769 ... [more]
A0A7S2FKD5_9STRA2.760e-3265.79Dynein light chain n=1 Tax=Dictyocha speculum TaxI... [more]
A0A8K1FE69_PYTOL4.410e-3259.77Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0N7L6I6_PLAHL1.000e-3160.92Dynein light chain n=1 Tax=Plasmopara halstedii Ta... [more]
D0NDR6_PHYIT1.230e-3158.62Dynein light chain n=5 Tax=Phytophthora TaxID=4783... [more]
A0A2D4CBJ0_PYTIN1.790e-3159.77Dynein light chain n=1 Tax=Pythium insidiosum TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1041contigF-serratus_M_contig1041:59001..59854 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.9
Seed ortholog evalue2.3e-36
Seed eggNOG ortholog2880.D7FHG8
KEGG koko:K10412,ko:K10418
KEGG Pathwayko04962,ko05016,map04962,map05016
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of ATP-dependent microtubule motor activity, plus-end-directed
EggNOG OGsKOG3430@1,KOG3430@2759
Ec32 ortholog descriptionDynein light chain 4, axonemal
Ec32 orthologEc-25_002460.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Exons2
Model size282
Cds size282
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928856.656411-CDS-F-serratus_M_contig1041:59000..591561622928856.656411-CDS-F-serratus_M_contig1041:59000..59156Fucus serratus maleCDSF-serratus_M_contig1041 59001..59156 -
1690962603.2690752-CDS-F-serratus_M_contig1041:59000..591561690962603.2690752-CDS-F-serratus_M_contig1041:59000..59156Fucus serratus maleCDSF-serratus_M_contig1041 59001..59156 -
1622928856.6717029-CDS-F-serratus_M_contig1041:59728..598541622928856.6717029-CDS-F-serratus_M_contig1041:59728..59854Fucus serratus maleCDSF-serratus_M_contig1041 59729..59854 -
1690962603.279587-CDS-F-serratus_M_contig1041:59728..598541690962603.279587-CDS-F-serratus_M_contig1041:59728..59854Fucus serratus maleCDSF-serratus_M_contig1041 59729..59854 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1041.435.1prot_F-serratus_M_contig1041.435.1Fucus serratus malepolypeptideF-serratus_M_contig1041 59001..59854 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1041.435.1

>prot_F-serratus_M_contig1041.435.1 ID=prot_F-serratus_M_contig1041.435.1|Name=mRNA_F-serratus_M_contig1041.435.1|organism=Fucus serratus male|type=polypeptide|length=94bp
MLSPHYSTPIRQSSDMSQEMVQEAVEIVTMSVDKFINVKNYEAAAQLIKH
SMDKKFGASWHCAIGEGFGFGVTYQQRNMIYVFYGQIGVLTFK*
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mRNA from alignment at F-serratus_M_contig1041:59001..59854-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1041.435.1 ID=mRNA_F-serratus_M_contig1041.435.1|Name=mRNA_F-serratus_M_contig1041.435.1|organism=Fucus serratus male|type=mRNA|length=854bp|location=Sequence derived from alignment at F-serratus_M_contig1041:59001..59854- (Fucus serratus male)
ATGCTTTCCCCGCACTATTCAACGCCCATCCGCCAGAGCTCGGATATGTC GCAAGAAATGGTACAGGAAGCGGTGGAGATCGTAACGATGTCGGTCGACA AATTCATCAACGTCAAGAACTACGAGGTGATGAGAAACTGGGATGGAGCG CTGCCGCTGGAAGTTACAGTAACCGATGCATATTGCTTCACTGGTGTACA TCTTACATTAATCATTGCGAGTAGTCGTGTCTAAACCGTTTTCACTCCCT CCCACAGATGAGCACTGGTATGTAGTAATGTAAGTCAGTAGATGCTGGTC ATCCACACCTCAGGTCCTGTCGTGGATGTATTGATTGGGGAGTGGATGGG TGCGATGATACTTCCATGTGTTTTTTTCTTCTGTTCTCTTCCCATCCATT CTGGACCCAAGTTCGTTGAACGTCTGTAACAAACAGTACTTTACTGTACT TGGGTAGCATCCGGGTAGCATCATATCCCTTTGTTTTTTCCTGACAATTC CTCCATATTTTTTAAAGAAAAATCTGAACGTATCTAGAATCTAGACCTTC TGAGCATCCCTCAATCAGGGGGGGGGATGTCAAAACGTTTTTGTTGTATT AGACTAATACGTTCTGTTTGTAGAAGGTACTGTACCACTCACATTATTTT TGTTCGGCCGGTTTGTGTGTACATTATTTATCAATATCGATTCGTCAGGC CGCGGCGCAGTTAATCAAGCACTCAATGGACAAGAAATTTGGTGCGTCAT GGCACTGCGCCATCGGAGAGGGGTTCGGCTTCGGGGTCACTTACCAGCAA CGAAACATGATTTATGTCTTTTACGGCCAGATCGGGGTGCTCACCTTCAA GTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1041:59001..59854-

>mRNA_F-serratus_M_contig1041.435.1 ID=mRNA_F-serratus_M_contig1041.435.1|Name=mRNA_F-serratus_M_contig1041.435.1|organism=Fucus serratus male|type=CDS|length=564bp|location=Sequence derived from alignment at F-serratus_M_contig1041:59001..59854- (Fucus serratus male)
ATGCTTTCCCCGCACTATTCAACGCCCATCCGCCAGAGCTCGGATATGTC
GCAAGAAATGGTACAGGAAGCGGTGGAGATCGTAACGATGTCGGTCGACA
AATTCATCAACGTCAAGAACTACGAGATGCTTTCCCCGCACTATTCAACG
CCCATCCGCCAGAGCTCGGATATGTCGCAAGAAATGGTACAGGAAGCGGT
GGAGATCGTAACGATGTCGGTCGACAAATTCATCAACGTCAAGAACTACG
AGGCCGCGGCGCAGTTAATCAAGCACTCAATGGACAAGAAATTTGGTGCG
TCATGGCACTGCGCCATCGGAGAGGGGTTCGGCTTCGGGGTCACTTACCA
GCAACGAAACATGATTTATGTCTTTTACGGCCAGATCGGGGTGCTCACCT
TCAAGTGAGCCGCGGCGCAGTTAATCAAGCACTCAATGGACAAGAAATTT
GGTGCGTCATGGCACTGCGCCATCGGAGAGGGGTTCGGCTTCGGGGTCAC
TTACCAGCAACGAAACATGATTTATGTCTTTTACGGCCAGATCGGGGTGC
TCACCTTCAAGTGA
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