mRNA_F-serratus_M_contig1041.430.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1041.430.1
Unique NamemRNA_F-serratus_M_contig1041.430.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1041.430.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 2.180e-19
Identity = 53/85 (62.35%), Postives = 60/85 (70.59%), Query Frame = 1 
Query:    1 ESLDDEEEQRGVVKKLRWRTEVGWMGPSAIPAGSAPASGS---SSCGGCRGDGFVIPLDIRRRGKVRALAHSLVTDVVEAVLRRC 246
            ESLDDEEEQRGVVKKLRWRTEVG   PS  PA + P +     SS G    DGFV PLD+RR+ K+R LAH+LV D VEA L +C
Sbjct:  219 ESLDDEEEQRGVVKKLRWRTEVGRTIPSTRPAAARPPASVAPVSSTGD--DDGFVSPLDLRRKAKLRGLAHALVLDTVEAALAQC 301
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BLAST of mRNA_F-serratus_M_contig1041.430.1 vs. uniprot
Match: A0A6H5L3J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3J9_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 5.320e-19
Identity = 53/88 (60.23%), Postives = 59/88 (67.05%), Query Frame = 1 
Query:    1 ESLDDEEEQRGVVKKLRWRTEVGWMGPSAI------PAGSAPASGSSSCGGCRGDGFVIPLDIRRRGKVRALAHSLVTDVVEAVLRRC 246
            ESLDDEEEQRGVVKKLRWRTEVG   PS        PA  AP S S +      DGFV PLD+RR+ K+R LAH+LV D VEA L +C
Sbjct:  360 ESLDDEEEQRGVVKKLRWRTEVGRTIPSTRTAAARPPASVAPVSSSGN-----DDGFVSPLDLRRKAKLRGLAHALVLDTVEAALAQC 442
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1041.430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHG7_ECTSI2.180e-1962.35LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L3J9_9PHAE5.320e-1960.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1041contigF-serratus_M_contig1041:15857..16925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue9.7e-17
Seed eggNOG ortholog2880.D7FHG7
KEGG koko:K03514,ko:K11700
KEGG Pathwayko03018,map03018
KEGG ModuleM00393
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0003824,GO:0004652,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005844,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007080,GO:0008150,GO:0008152,GO:0008608,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0019219,GO:0019222,GO:0022402,GO:0030702,GO:0030880,GO:0031047,GO:0031048,GO:0031123,GO:0031124,GO:0031134,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031379,GO:0031380,GO:0032991,GO:0034641,GO:0035770,GO:0036464,GO:0040029,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045495,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050000,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060255,GO:0060293,GO:0061695,GO:0065007,GO:0070566,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098813,GO:0140014,GO:1901360,GO:1902494,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1990141,GO:1990234,GO:1990758,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG1906@2759
EC2.7.7.19
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019,ko03036
Exons2
Model size517
Cds size516
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928855.965773-CDS-F-serratus_M_contig1041:15856..159331622928855.965773-CDS-F-serratus_M_contig1041:15856..15933Fucus serratus maleCDSF-serratus_M_contig1041 15857..15933 +
1690962602.8169534-CDS-F-serratus_M_contig1041:15856..159331690962602.8169534-CDS-F-serratus_M_contig1041:15856..15933Fucus serratus maleCDSF-serratus_M_contig1041 15857..15933 +
1622928855.9815376-CDS-F-serratus_M_contig1041:16486..169251622928855.9815376-CDS-F-serratus_M_contig1041:16486..16925Fucus serratus maleCDSF-serratus_M_contig1041 16487..16925 +
1690962602.829941-CDS-F-serratus_M_contig1041:16486..169251690962602.829941-CDS-F-serratus_M_contig1041:16486..16925Fucus serratus maleCDSF-serratus_M_contig1041 16487..16925 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1041.430.1prot_F-serratus_M_contig1041.430.1Fucus serratus malepolypeptideF-serratus_M_contig1041 15857..16925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1041.430.1

>prot_F-serratus_M_contig1041.430.1 ID=prot_F-serratus_M_contig1041.430.1|Name=mRNA_F-serratus_M_contig1041.430.1|organism=Fucus serratus male|type=polypeptide|length=172bp
ESLDDEEEQRGVVKKLRWRTEVGWMGPSAIPAGSAPASGSSSCGGCRGDG
FVIPLDIRRRGKVRALAHSLVTDVVEAVLRRCVLETTTPLPIPTSKAAAG
FKRTADMALSKEAAAAATTLATATADATVAAVAAAPCSVIPAAAFKRAAL
SATAKPGAVELLPTCPWPSPAE
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mRNA from alignment at F-serratus_M_contig1041:15857..16925+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1041.430.1 ID=mRNA_F-serratus_M_contig1041.430.1|Name=mRNA_F-serratus_M_contig1041.430.1|organism=Fucus serratus male|type=mRNA|length=1069bp|location=Sequence derived from alignment at F-serratus_M_contig1041:15857..16925+ (Fucus serratus male)
GAGTCGTTGGACGACGAGGAAGAGCAACGGGGCGTGGTGAAGAAGCTGCG
GTGGAGGACGGAAGTAGGTTGGATGGGGTAAGTCGGGGCGGGGGGGTACG
TAAAGAGATACCAGTCGTGGTGCTATAAAAGAGTGGTTGGTACGAAGCTC
AGAGGCCGTCGTGACTGTAGATATGATGTACTCTCTAAATACTGTGGAAA
ATGCTGCTGAGGGTTAGGTGTCATGCGGCACTGAATTTCAAGAGATTGTG
TAGGCGCAGGTTGGACTCTCGAGAAGTTCCACATATTATCACTATTTTTC
TTCGTTTGTGGTTCTCGAGGCGTGCCTTGTAAACGACAAGAGCTGGCGAA
CGTAAGTCGAAAGTGTACAGTACTGTACGATAGTTCTCTAGTGTTCGTCG
CCGATGAGGCGGTGTTCCATCTTGAGACCAAGAAATTCCGGGGCACTGTT
TGGAAAATCCTCTAGTGACGTGTCCGAAGGACTATGTCAGATCTGGAAGC
CGTGCTTTTCTAGTTTTTTCCCACCATTCTCTTTATATCTCCCCGAGGGT
ATTGGCCCTTCCGCGCGGTTCCCTCCATACACACACACACCCCTCCCCCC
GCTACCCCTGCCCCTACCCCCCTACTGCAGACCCAGCGCGATTCCGGCCG
GCAGCGCACCCGCAAGCGGCAGCAGCAGCTGTGGTGGCTGCAGAGGCGAT
GGCTTCGTTATCCCTCTCGATATCCGGCGGCGAGGCAAGGTGCGGGCCCT
GGCGCACTCCTTGGTGACGGACGTCGTTGAGGCCGTTCTCCGCCGGTGCG
TGCTGGAGACAACGACGCCTCTGCCGATACCAACATCAAAGGCAGCAGCG
GGTTTCAAGCGGACAGCGGATATGGCACTGAGCAAGGAGGCTGCTGCTGC
GGCTACGACTTTGGCCACTGCTACTGCGGATGCGACTGTAGCTGCTGTGG
CGGCGGCGCCTTGCAGCGTGATCCCCGCTGCGGCCTTCAAGCGCGCCGCT
CTCAGCGCGACGGCGAAGCCAGGCGCCGTCGAACTTCTTCCAACATGCCC
GTGGCCATCGCCGGCAGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1041:15857..16925+

>mRNA_F-serratus_M_contig1041.430.1 ID=mRNA_F-serratus_M_contig1041.430.1|Name=mRNA_F-serratus_M_contig1041.430.1|organism=Fucus serratus male|type=CDS|length=1032bp|location=Sequence derived from alignment at F-serratus_M_contig1041:15857..16925+ (Fucus serratus male)
GAGTCGTTGGACGACGAGGAAGAGCAACGGGGCGTGGTGAAGAAGCTGCG
GTGGAGGACGGAAGTAGGTTGGATGGGGAGTCGTTGGACGACGAGGAAGA
GCAACGGGGCGTGGTGAAGAAGCTGCGGTGGAGGACGGAAGTAGGTTGGA
TGGGACCCAGCGCGATTCCGGCCGGCAGCGCACCCGCAAGCGGCAGCAGC
AGCTGTGGTGGCTGCAGAGGCGATGGCTTCGTTATCCCTCTCGATATCCG
GCGGCGAGGCAAGGTGCGGGCCCTGGCGCACTCCTTGGTGACGGACGTCG
TTGAGGCCGTTCTCCGCCGGTGCGTGCTGGAGACAACGACGCCTCTGCCG
ATACCAACATCAAAGGCAGCAGCGGGTTTCAAGCGGACAGCGGATATGGC
ACTGAGCAAGGAGGCTGCTGCTGCGGCTACGACTTTGGCCACTGCTACTG
CGGATGCGACTGTAGCTGCTGTGGCGGCGGCGCCTTGCAGCGTGATCCCC
GCTGCGGCCTTCAAGCGCGCCGCTCTCAGCGCGACGGCGAAGCCAGGCGC
CGTCGAACTTCTTCCAACATGCCCGTGGCCATCGCCGGCAGAGACCCAGC
GCGATTCCGGCCGGCAGCGCACCCGCAAGCGGCAGCAGCAGCTGTGGTGG
CTGCAGAGGCGATGGCTTCGTTATCCCTCTCGATATCCGGCGGCGAGGCA
AGGTGCGGGCCCTGGCGCACTCCTTGGTGACGGACGTCGTTGAGGCCGTT
CTCCGCCGGTGCGTGCTGGAGACAACGACGCCTCTGCCGATACCAACATC
AAAGGCAGCAGCGGGTTTCAAGCGGACAGCGGATATGGCACTGAGCAAGG
AGGCTGCTGCTGCGGCTACGACTTTGGCCACTGCTACTGCGGATGCGACT
GTAGCTGCTGTGGCGGCGGCGCCTTGCAGCGTGATCCCCGCTGCGGCCTT
CAAGCGCGCCGCTCTCAGCGCGACGGCGAAGCCAGGCGCCGTCGAACTTC
TTCCAACATGCCCGTGGCCATCGCCGGCAGAG
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