mRNA_F-serratus_M_contig1040.429.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1040.429.1 vs. uniprot
Match: D7FP11_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP11_ECTSI) HSP 1 Score: 429 bits (1103), Expect = 3.070e-140 Identity = 227/424 (53.54%), Postives = 278/424 (65.57%), Query Frame = 3
Query: 147 ILWTGVWTLLDRHAPGGTGVWKEVALALVGAFVMIWTRTLFSNAGMDSLDYEGTLVEMGSLLEQGRLDWRDKAAFFARSVLAIAGAILFWDGVFTLCDQYVWENTLAYNLCCATVGGAGMVWAMTSEDAEREAMGGGIDGLLRPAGVRVALAGKLEGGELTLTRLSQERRTMLYAKAIFCNVCSVVFWKGVAEVIERVGPDTGWTGVVFFVVGIVVLRLTQRLSLNSGLEDDLGIVVEMGPEMGPT------------------RDYQMTPLRVDDGVED-------SVQKTSKAFGDRHIRDTESTVGGTVRPLGYGCPDAFFWPCALGMVDVLGENCPRWVMTATELTGVVFAWTGIEWYVWDGDYIKDTWLRDVAYIVAGLTILIATGTFANLAGTISPMSILKQVHKYNKYEETQPLLAS 1343
+LWTGVWTLLDRH PGGTG+WKE+ LA+ GA++M+WTRT FSNAGMDSLD EG+L EMGSLL QGRL WRD+A F+ARS+LAI G+ILFWDGV+ LCD++ WE TL YNL CA++GGAGMVW MTSED + G I G PA + + A + G +RL R LYAKA+FCNVC VVFWKGV E+IE GP+ WTG+VFFV+GI +L T RLS+NSGLED L V++ + GP R +PL +D V D + +FG ++R G R G GC V+V PRWV TA ELTGVVFAWTGIEWYVW+GDYI D+ LRD+ YI GL IL+ TGTF NLAGTISP++ LKQVH++N++EE PLL++
Sbjct: 1 MLWTGVWTLLDRHVPGGTGLWKELGLAVAGAWIMVWTRTFFSNAGMDSLDQEGSLSEMGSLLVQGRLRWRDEAKFYARSLLAIVGSILFWDGVYDLCDEHTWEGTLTYNLVCASLGGAGMVWVMTSEDEDERMRGDDIGG--GPAAMMASAANRSGGRS---SRLGPGNRGRLYAKALFCNVCGVVFWKGVEEIIEDNGPNKDWTGLVFFVIGISILIATDRLSMNSGLEDGLPPAVDI--QAGPAACTIETAAWDASSSNPDLRAPSSSPLLLDVVVNDLSCPGCSRLVAAPTSFGGGNVRSPCGGEGAGSRRRGRGC------------VEV-----PRWVTTAAELTGVVFAWTGIEWYVWEGDYIPDSALRDLGYIAVGLGILVGTGTFFNLAGTISPVAALKQVHQHNRHEEAMPLLSN 400
BLAST of mRNA_F-serratus_M_contig1040.429.1 vs. uniprot
Match: A0A835Z909_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z909_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 4.740e-14 Identity = 60/197 (30.46%), Postives = 81/197 (41.12%), Query Frame = 3
Query: 744 PDTGWTGVVFFVVGIVVLRLTQRLSLNSGLEDDLGIVVEMGPEMGPTRDYQMTPLRVDDGVEDSVQKTSKAFGDRHIRDTESTVGGTVRPLGYGCPDAFFWPCALGMVDVLGENCPRWVMTATELTGVVFAWTGIEWYVWDGDYIKDTWLRDVAYIVAGLTILIATGTFANLAGTISPMSILKQVHKYNKYEETQPL 1334
PD W FV GI+VLR RL N GL D GP+ G R + + D VQ S +G T+ + A+EL V WTG EW++WDG +T RD Y + G +L+ TGTF +LAGT+SPM + +VH+ + E +PL
Sbjct: 2 PDKWWAPATLFVGGIIVLRALDRLDTNLGLVDG-------GPKGG--RKHTQS---------DKVQ---------------SAMGQTL-------------------------------LNASELIAVCLIWTGCEWFIWDGFLFHETCTRDSLYALVGFAVLLCTGTFVSLAGTVSPMGVYGRVHQKLQNNE-EPL 133 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1040.429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1040.429.1 >prot_F-serratus_M_contig1040.429.1 ID=prot_F-serratus_M_contig1040.429.1|Name=mRNA_F-serratus_M_contig1040.429.1|organism=Fucus serratus male|type=polypeptide|length=433bp MRTERGTWMDVLRGGLSWPGIVILWTGVWTLLDRHAPGGTGVWKEVALALback to top mRNA from alignment at F-serratus_M_contig1040:204274..230011+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1040.429.1 ID=mRNA_F-serratus_M_contig1040.429.1|Name=mRNA_F-serratus_M_contig1040.429.1|organism=Fucus serratus male|type=mRNA|length=25738bp|location=Sequence derived from alignment at F-serratus_M_contig1040:204274..230011+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1040:204274..230011+ >mRNA_F-serratus_M_contig1040.429.1 ID=mRNA_F-serratus_M_contig1040.429.1|Name=mRNA_F-serratus_M_contig1040.429.1|organism=Fucus serratus male|type=CDS|length=2598bp|location=Sequence derived from alignment at F-serratus_M_contig1040:204274..230011+ (Fucus serratus male)back to top |