mRNA_F-serratus_M_contig1036.385.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1036.385.1
Unique NamemRNA_F-serratus_M_contig1036.385.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1036.385.1 vs. uniprot
Match: A0A6H5JUW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW6_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 3.190e-28
Identity = 59/136 (43.38%), Postives = 81/136 (59.56%), Query Frame = 1 
Query:    1 YTDSEFGACLDTRRLVSGAVFMLAKGATSWHLMMQDVTAASTLEAEFVALSEVVKEVLFLRQVQEFMEPSMRVGTVDVFKDNGGIFKLATNRYASHRTKHIDVNHHLVRDASDARIVKVAYVRSGDQHADLLTKPL 408
            Y D++F +    RR VSG +     GA SW    Q     ST EAE+VAL +VVKE+LFLRQ+  FM P + +  + VF+DN G  +LA N  ++  +KHIDV HH +R+  + + + V +V S  Q AD LTK L
Sbjct:   60 YADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSL 195
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BLAST of mRNA_F-serratus_M_contig1036.385.1 vs. uniprot
Match: A0A6H5JWJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ4_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 9.180e-28
Identity = 59/136 (43.38%), Postives = 81/136 (59.56%), Query Frame = 1 
Query:    1 YTDSEFGACLDTRRLVSGAVFMLAKGATSWHLMMQDVTAASTLEAEFVALSEVVKEVLFLRQVQEFMEPSMRVGTVDVFKDNGGIFKLATNRYASHRTKHIDVNHHLVRDASDARIVKVAYVRSGDQHADLLTKPL 408
            Y D++F +    RR VSG +     GA SW    Q     ST EAE+VAL +VVKE+LFLRQ+  FM P + +  + VF+DN G  +LA N  ++  +KHIDV HH +R+  + + + V +V S  Q AD LTK L
Sbjct:  105 YADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSL 240
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BLAST of mRNA_F-serratus_M_contig1036.385.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.440e-27
Identity = 59/136 (43.38%), Postives = 80/136 (58.82%), Query Frame = 1 
Query:    1 YTDSEFGACLDTRRLVSGAVFMLAKGATSWHLMMQDVTAASTLEAEFVALSEVVKEVLFLRQVQEFMEPSMRVGTVDVFKDNGGIFKLATNRYASHRTKHIDVNHHLVRDASDARIVKVAYVRSGDQHADLLTKPL 408
            Y D++F +    RR VSG +     GA SW    Q     ST EAE+VAL EVVK +LFLRQ+  FM P + +  + VF+DN G  +LA N  ++  +KHIDV HH +R+  + + + V +V S  Q AD LTK L
Sbjct:   65 YADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGEVVKVILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSL 200
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BLAST of mRNA_F-serratus_M_contig1036.385.1 vs. uniprot
Match: A0A6H5KSZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ5_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.940e-27
Identity = 58/136 (42.65%), Postives = 81/136 (59.56%), Query Frame = 1 
Query:    1 YTDSEFGACLDTRRLVSGAVFMLAKGATSWHLMMQDVTAASTLEAEFVALSEVVKEVLFLRQVQEFMEPSMRVGTVDVFKDNGGIFKLATNRYASHRTKHIDVNHHLVRDASDARIVKVAYVRSGDQHADLLTKPL 408
            Y D++F +    RR VSG +     GA SW  + Q     ST EAE+VAL +VVKE+LFLRQ+  FM P + +  + +F+DN G  +LA N  ++  +KHIDV HH +R+  +     V +V S +Q AD LTK L
Sbjct:  141 YADADFASKAADRRSVSGGIVTCGGGAVSWFSITQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGIPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVEREEFSVMHVPSPNQRADCLTKSL 276
[Close]
BLAST of mRNA_F-serratus_M_contig1036.385.1 vs. uniprot
Match: A0A6H5KIJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ7_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 2.640e-27
Identity = 56/136 (41.18%), Postives = 81/136 (59.56%), Query Frame = 1 
Query:    1 YTDSEFGACLDTRRLVSGAVFMLAKGATSWHLMMQDVTAASTLEAEFVALSEVVKEVLFLRQVQEFMEPSMRVGTVDVFKDNGGIFKLATNRYASHRTKHIDVNHHLVRDASDARIVKVAYVRSGDQHADLLTKPL 408
            Y D++F +    RR VSG +     G+ SW    Q     ST EAE+VAL +VVKE++FLRQ+  FM P + +  + +F+DN G  +LA N  ++  +KHIDV HH +R+  + + + V +V S  Q AD LTK L
Sbjct:   76 YADADFASKAANRRSVSGGIVTCGGGSVSWFSRTQKCVTLSTTEAEYVALGDVVKEIIFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSL 211
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BLAST of mRNA_F-serratus_M_contig1036.385.1 vs. uniprot
Match: A0A6H5JHS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHS1_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.880e-26
Identity = 58/136 (42.65%), Postives = 83/136 (61.03%), Query Frame = 1 
Query:    1 YTDSEFGACLDTRRLVSGAVFMLAKGATSWHLMMQDVTAASTLEAEFVALSEVVKEVLFLRQVQEFMEPSMRVGTVDVFKDNGGIFKLATNRYASHRTKHIDVNHHLVRDASDARIVKVAYVRSGDQHADLLTKPL 408
            Y D++F +    RR VSG +     GA SW+ + Q   A ST EAE+VAL +VVKE+LF RQ+  FM P + +  + +F+DN G  +LA N  ++  +KHIDV HH +R+  + + + V +V S  Q AD LTK L
Sbjct:  400 YADADFASKAADRRSVSGGIVTCGGGAVSWYSIAQKCVALSTTEAEYVALGDVVKEILFSRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKTL 535
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BLAST of mRNA_F-serratus_M_contig1036.385.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 2.080e-26
Identity = 59/136 (43.38%), Postives = 81/136 (59.56%), Query Frame = 1 
Query:    1 YTDSEFGACLDTRRLVSGAVFMLAKGATSWHLMMQDVTAASTLEAEFVALSEVVKEVLFLRQVQEFMEPSMRVGTVDVFKDNGGIFKLATNRYASHRTKHIDVNHHLVRDASDARIVKVAYVRSGDQHADLLTKPL 408
            Y D++F +    RR VSG +     GA SW    Q     ST EAE+VAL +VVKE+LFLRQ+  FM P + +  + VF+DN G  +LA N  ++  +KHIDV HH +R+  + + + V +V S  Q AD LTK L
Sbjct:  311 YADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSL 446
[Close]
BLAST of mRNA_F-serratus_M_contig1036.385.1 vs. uniprot
Match: A0A6H5KLT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLT9_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 2.090e-26
Identity = 59/136 (43.38%), Postives = 80/136 (58.82%), Query Frame = 1 
Query:    1 YTDSEFGACLDTRRLVSGAVFMLAKGATSWHLMMQDVTAASTLEAEFVALSEVVKEVLFLRQVQEFMEPSMRVGTVDVFKDNGGIFKLATNRYASHRTKHIDVNHHLVRDASDARIVKVAYVRSGDQHADLLTKPL 408
            Y D++F +    RR VSG +     GA SW    Q     ST EAE+VAL +VVKE+LFLRQ+  FM P + +    VF+DN G  +LA N  ++  +KHIDV HH +R+  + + + V +V S  Q AD LTK L
Sbjct:  175 YADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCNPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSL 310
[Close]
BLAST of mRNA_F-serratus_M_contig1036.385.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 2.260e-26
Identity = 56/136 (41.18%), Postives = 79/136 (58.09%), Query Frame = 1 
Query:    1 YTDSEFGACLDTRRLVSGAVFMLAKGATSWHLMMQDVTAASTLEAEFVALSEVVKEVLFLRQVQEFMEPSMRVGTVDVFKDNGGIFKLATNRYASHRTKHIDVNHHLVRDASDARIVKVAYVRSGDQHADLLTKPL 408
            + D+++ +    RR VSG   M  +G  SW    Q     ST EAE+V+L++V+KEVLFLRQV  FM P   +  + VF+DN G  +LA N  ++  +KH DV HH + +    + + + YV S  QHAD LTK L
Sbjct:  142 FADADYASKAADRRSVSGGFVMCGRGCISWFSRTQQCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHFDVRHHFIGELVGRKEISIFYVESAYQHADFLTKAL 277
[Close]
BLAST of mRNA_F-serratus_M_contig1036.385.1 vs. uniprot
Match: A0A6H5L5I8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5I8_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 2.820e-26
Identity = 61/136 (44.85%), Postives = 79/136 (58.09%), Query Frame = 1 
Query:    1 YTDSEFGACLDTRRLVSGAVFMLAKGATSWHLMMQDVTAASTLEAEFVALSEVVKEVLFLRQVQEFMEPSMRVGTVDVFKDNGGIFKLATNRYASHRTKHIDVNHHLVRDASDARIVKVAYVRSGDQHADLLTKPL 408
            Y D++F +    RR VSG +     G  SW    Q     ST EAE+VAL +VVKE+LFLRQV  FM P + +  + VFKDN G  +LA N  ++  +KHIDV HH +R+  + +   V YV S  Q AD LTK L
Sbjct: 1113 YADADFASKAADRRSVSGGIVTCGGGVVSWFSRTQKFVTLSTTEAEYVALGDVVKEILFLRQVWRFMLPKVSMPCIPVFKDNQGAIQLAQNPISNSNSKHIDVRHHFLRELEERKENSVIYVPSPYQRADFLTKRL 1248
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1036.385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUW6_9PHAE3.190e-2843.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWJ4_9PHAE9.180e-2843.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEZ8_9PHAE1.440e-2743.38Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSZ5_9PHAE1.940e-2742.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIJ7_9PHAE2.640e-2741.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHS1_9PHAE1.880e-2642.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JFG2_9PHAE2.080e-2643.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KLT9_9PHAE2.090e-2643.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD60_9PHAE2.260e-2641.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5I8_9PHAE2.820e-2644.85Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1036contigF-serratus_M_contig1036:290526..290933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score99.4
Seed ortholog evalue1.4e-18
Seed eggNOG ortholog42374.XP_002416684.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Transposable element
EggNOG OGs38DPC@33154,3NUZ7@4751,3QNZW@4890,3RTT4@4891,47E39@766764,COG2801@1,KOG0017@2759
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-11_001720.2
COG Functional cat.L
Best tax levelDebaryomycetaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size408
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928847.5527308-CDS-F-serratus_M_contig1036:290525..2909331622928847.5527308-CDS-F-serratus_M_contig1036:290525..290933Fucus serratus maleCDSF-serratus_M_contig1036 290526..290933 +
1690962598.8819916-CDS-F-serratus_M_contig1036:290525..2909331690962598.8819916-CDS-F-serratus_M_contig1036:290525..290933Fucus serratus maleCDSF-serratus_M_contig1036 290526..290933 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1036.385.1prot_F-serratus_M_contig1036.385.1Fucus serratus malepolypeptideF-serratus_M_contig1036 290526..290933 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1036.385.1

>prot_F-serratus_M_contig1036.385.1 ID=prot_F-serratus_M_contig1036.385.1|Name=mRNA_F-serratus_M_contig1036.385.1|organism=Fucus serratus male|type=polypeptide|length=136bp
YTDSEFGACLDTRRLVSGAVFMLAKGATSWHLMMQDVTAASTLEAEFVAL
SEVVKEVLFLRQVQEFMEPSMRVGTVDVFKDNGGIFKLATNRYASHRTKH
IDVNHHLVRDASDARIVKVAYVRSGDQHADLLTKPL
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mRNA from alignment at F-serratus_M_contig1036:290526..290933+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1036.385.1 ID=mRNA_F-serratus_M_contig1036.385.1|Name=mRNA_F-serratus_M_contig1036.385.1|organism=Fucus serratus male|type=mRNA|length=408bp|location=Sequence derived from alignment at F-serratus_M_contig1036:290526..290933+ (Fucus serratus male)
TACACAGACTCGGAGTTCGGAGCCTGCCTGGATACGAGACGATTGGTTTC
GGGTGCGGTGTTCATGCTGGCGAAGGGGGCGACCAGCTGGCACTTAATGA
TGCAAGACGTGACAGCAGCGAGTACCTTGGAGGCAGAGTTCGTTGCTTTA
TCAGAGGTGGTAAAAGAAGTCCTATTTTTGAGACAGGTGCAGGAGTTCAT
GGAACCGTCGATGAGGGTAGGTACAGTGGATGTGTTCAAAGACAACGGGG
GGATCTTCAAGCTGGCCACAAACAGGTACGCTAGTCATAGGACTAAGCAC
ATTGATGTGAATCACCATCTGGTGAGGGACGCATCTGACGCGCGAATTGT
TAAAGTAGCGTATGTGAGGTCGGGAGATCAGCACGCGGACTTGCTTACCA
AGCCGCTA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1036:290526..290933+

>mRNA_F-serratus_M_contig1036.385.1 ID=mRNA_F-serratus_M_contig1036.385.1|Name=mRNA_F-serratus_M_contig1036.385.1|organism=Fucus serratus male|type=CDS|length=816bp|location=Sequence derived from alignment at F-serratus_M_contig1036:290526..290933+ (Fucus serratus male)
TACACAGACTCGGAGTTCGGAGCCTGCCTGGATACGAGACGATTGGTTTC
GGGTGCGGTGTTCATGCTGGCGAAGGGGGCGACCAGCTGGCACTTAATGA
TGCAAGACGTGACAGCAGCGAGTACCTTGGAGGCAGAGTTCGTTGCTTTA
TCAGAGGTGGTAAAAGAAGTCCTATTTTTGAGACAGGTGCAGGAGTTCAT
GGAACCGTCGATGAGGGTAGGTACAGTGGATGTGTTCAAAGACAACGGGG
GGATCTTCAAGCTGGCCACAAACAGGTACGCTAGTCATAGGACTAAGCAC
ATTGATGTGAATCACCATCTGGTGAGGGACGCATCTGACGCGCGAATTGT
TAAAGTAGCGTATGTGAGGTCGGGAGATCAGCACGCGGACTTGCTTACCA
AGCCGCTATACACAGACTCGGAGTTCGGAGCCTGCCTGGATACGAGACGA
TTGGTTTCGGGTGCGGTGTTCATGCTGGCGAAGGGGGCGACCAGCTGGCA
CTTAATGATGCAAGACGTGACAGCAGCGAGTACCTTGGAGGCAGAGTTCG
TTGCTTTATCAGAGGTGGTAAAAGAAGTCCTATTTTTGAGACAGGTGCAG
GAGTTCATGGAACCGTCGATGAGGGTAGGTACAGTGGATGTGTTCAAAGA
CAACGGGGGGATCTTCAAGCTGGCCACAAACAGGTACGCTAGTCATAGGA
CTAAGCACATTGATGTGAATCACCATCTGGTGAGGGACGCATCTGACGCG
CGAATTGTTAAAGTAGCGTATGTGAGGTCGGGAGATCAGCACGCGGACTT
GCTTACCAAGCCGCTA
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