mRNA_F-serratus_M_contig1032.364.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1032.364.1
Unique NamemRNA_F-serratus_M_contig1032.364.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1032.364.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 5.290e-7
Identity = 48/127 (37.80%), Postives = 66/127 (51.97%), Query Frame = -2 
Query:   44 FCAMGAPLCLLLLWLREPCLQVFRLIARLTCLGGESRSIHPSNEDNVEANEQSTSMLDAKVHSILE--STGLGASKLQKYLEDPMIDPEVRPDEVELGTTVGHMKLLRNVLSGRI-DSLEKKIDDLD 415
            +C +GAPL L+  WL  P ++  +L  R  C   + R        N ++           V+ +LE  S GL A  LQ YLEDP+ DPEVRPDE    TTV ++K LRN L   I   L+ K+D ++
Sbjct: 1149 WCVLGAPLYLMAFWLTAP-MKWLKL--RPWCWVWDRRQAPYIASWNPKS-----------VNDLLEGNSGGLVAGDLQMYLEDPIGDPEVRPDERRKQTTVENIKQLRNRLEKTILTHLDAKLDSIE 1261
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1032.364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLB1_ECTSI5.290e-737.80Ankyrin Repeat Transient Receptor Potential Channe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1032contigF-serratus_M_contig1032:127924..128339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size416
Cds size396
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928843.3079214-UTR-F-serratus_M_contig1032:127923..1279431622928843.3079214-UTR-F-serratus_M_contig1032:127923..127943Fucus serratus maleUTRF-serratus_M_contig1032 127924..127943 +
1690962597.3504372-UTR-F-serratus_M_contig1032:127923..1279431690962597.3504372-UTR-F-serratus_M_contig1032:127923..127943Fucus serratus maleUTRF-serratus_M_contig1032 127924..127943 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928843.3230886-CDS-F-serratus_M_contig1032:127943..1283391622928843.3230886-CDS-F-serratus_M_contig1032:127943..128339Fucus serratus maleCDSF-serratus_M_contig1032 127944..128339 +
1690962597.3606648-CDS-F-serratus_M_contig1032:127943..1283391690962597.3606648-CDS-F-serratus_M_contig1032:127943..128339Fucus serratus maleCDSF-serratus_M_contig1032 127944..128339 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1032.364.1prot_F-serratus_M_contig1032.364.1Fucus serratus malepolypeptideF-serratus_M_contig1032 127944..128339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1032.364.1

>prot_F-serratus_M_contig1032.364.1 ID=prot_F-serratus_M_contig1032.364.1|Name=mRNA_F-serratus_M_contig1032.364.1|organism=Fucus serratus male|type=polypeptide|length=132bp
MNVFSRPPSRSSIFFSRLSIRPLSTFLKSFMCPTVVPSSTSSGRTSGSIM
GSSRYFCNLLAPRPVDSNILCTLASNILVLCSLASTLSSFEGCIDLDSPP
RHVKRAMSRNTCKHGSLSHNSKRQRGAPIAQN
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mRNA from alignment at F-serratus_M_contig1032:127924..128339+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1032.364.1 ID=mRNA_F-serratus_M_contig1032.364.1|Name=mRNA_F-serratus_M_contig1032.364.1|organism=Fucus serratus male|type=mRNA|length=416bp|location=Sequence derived from alignment at F-serratus_M_contig1032:127924..128339+ (Fucus serratus male)
CCAGGCAGTCAACACGGCCGATGAACGTTTTCTCAAGGCCTCCATCTAGA
TCATCAATTTTCTTCTCAAGGCTGTCAATACGGCCGCTGAGCACATTCCT
CAAGAGCTTCATGTGCCCGACGGTGGTACCAAGCTCGACCTCGTCAGGTC
GCACTTCGGGGTCGATCATGGGATCCTCCAGATATTTCTGCAACTTACTA
GCCCCGAGACCTGTCGATTCTAATATACTGTGTACTTTAGCGTCCAACAT
ACTTGTACTTTGCTCGTTAGCTTCTACATTATCTTCATTTGAAGGGTGTA
TTGACCTCGACTCTCCTCCAAGACATGTCAAACGGGCGATGAGTCGAAAT
ACCTGCAAGCATGGTTCCCTTAGCCACAACAGCAAGAGGCAAAGAGGTGC
ACCCATAGCACAAAAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1032:127924..128339+

>mRNA_F-serratus_M_contig1032.364.1 ID=mRNA_F-serratus_M_contig1032.364.1|Name=mRNA_F-serratus_M_contig1032.364.1|organism=Fucus serratus male|type=CDS|length=792bp|location=Sequence derived from alignment at F-serratus_M_contig1032:127924..128339+ (Fucus serratus male)
ATGAACGTTTTCTCAAGGCCTCCATCTAGATCATCAATTTTCTTCTCAAG
GCTGTCAATACGGCCGCTGAGCACATTCCTCAAGAGCTTCATGTGCCCGA
CGGTGGTACCAAGCTCGACCTCGTCAGGTCGCACTTCGGGGTCGATCATG
GGATCCTCCAGATATTTCTGCAACTTACTAGCCCCGAGACCTGTCGATTC
TAATATACTGTGTACTTTAGCGTCCAACATACTTGTACTTTGCTCGTTAG
CTTCTACATTATCTTCATTTGAAGGGTGTATTGACCTCGACTCTCCTCCA
AGACATGTCAAACGGGCGATGAGTCGAAATACCTGCAAGCATGGTTCCCT
TAGCCACAACAGCAAGAGGCAAAGAGGTGCACCCATAGCACAAAACATGA
ACGTTTTCTCAAGGCCTCCATCTAGATCATCAATTTTCTTCTCAAGGCTG
TCAATACGGCCGCTGAGCACATTCCTCAAGAGCTTCATGTGCCCGACGGT
GGTACCAAGCTCGACCTCGTCAGGTCGCACTTCGGGGTCGATCATGGGAT
CCTCCAGATATTTCTGCAACTTACTAGCCCCGAGACCTGTCGATTCTAAT
ATACTGTGTACTTTAGCGTCCAACATACTTGTACTTTGCTCGTTAGCTTC
TACATTATCTTCATTTGAAGGGTGTATTGACCTCGACTCTCCTCCAAGAC
ATGTCAAACGGGCGATGAGTCGAAATACCTGCAAGCATGGTTCCCTTAGC
CACAACAGCAAGAGGCAAAGAGGTGCACCCATAGCACAAAAC
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