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Homology
BLAST of mRNA_F-serratus_M_contig1032.362.1 vs. uniprot
Match: A0A6H5JPK1_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK1_9PHAE) HSP 1 Score: 155 bits (393), Expect = 9.470e-40 Identity = 80/121 (66.12%), Postives = 96/121 (79.34%), Query Frame = 2
Query: 2 SPFPSMAHVTNARAKESLAAWRNFPILKCWILIGERPTVANPKRMKMQSLLRGKMRVTTGVLEQLNAMSEFRVRSYIAEGDDPHLTRTILIEHGETLVDAVLTLLSLGIESKDGTTRLEIL 364
+P SM HV NARAKESLAAW N I+K W+L+GERPTVAN K + MQSL++ +RVT GVLEQLNAMS FRVR YIAE DDP+LT T L+EH ETLV A++ +L +GI S+DG TRLE+L
Sbjct: 76 APPMSMVHVQNARAKESLAAWHNLSIMKVWMLMGERPTVANLKLIDMQSLMQDAVRVTAGVLEQLNAMSGFRVRMYIAESDDPNLTSTNLVEHMETLVYAIMKVLKVGIGSEDGQTRLELL 196
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 1 |
Model size | 723 |
Cds size | 570 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928843.2420194-UTR-F-serratus_M_contig1032:4365..4381 | 1622928843.2420194-UTR-F-serratus_M_contig1032:4365..4381 | Fucus serratus male | UTR | F-serratus_M_contig1032 4366..4381 + |
1690962597.3016577-UTR-F-serratus_M_contig1032:4365..4381 | 1690962597.3016577-UTR-F-serratus_M_contig1032:4365..4381 | Fucus serratus male | UTR | F-serratus_M_contig1032 4366..4381 + |
1622928843.268797-UTR-F-serratus_M_contig1032:4951..5088 | 1622928843.268797-UTR-F-serratus_M_contig1032:4951..5088 | Fucus serratus male | UTR | F-serratus_M_contig1032 4952..5088 + |
1690962597.3299472-UTR-F-serratus_M_contig1032:4951..5088 | 1690962597.3299472-UTR-F-serratus_M_contig1032:4951..5088 | Fucus serratus male | UTR | F-serratus_M_contig1032 4952..5088 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928843.2570095-CDS-F-serratus_M_contig1032:4381..4951 | 1622928843.2570095-CDS-F-serratus_M_contig1032:4381..4951 | Fucus serratus male | CDS | F-serratus_M_contig1032 4382..4951 + |
1690962597.3121722-CDS-F-serratus_M_contig1032:4381..4951 | 1690962597.3121722-CDS-F-serratus_M_contig1032:4381..4951 | Fucus serratus male | CDS | F-serratus_M_contig1032 4382..4951 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1032.362.1 >prot_F-serratus_M_contig1032.362.1 ID=prot_F-serratus_M_contig1032.362.1|Name=mRNA_F-serratus_M_contig1032.362.1|organism=Fucus serratus male|type=polypeptide|length=190bp
MAHVTNARAKESLAAWRNFPILKCWILIGERPTVANPKRMKMQSLLRGKM RVTTGVLEQLNAMSEFRVRSYIAEGDDPHLTRTILIEHGETLVDAVLTLL SLGIESKDGTTRLEILPKVQKRHRLDPRPLPPALGKNAGPRKHLGQEALD FTSAVLASSSSEISCGIVSAQLRVGFPVLVRLSWVDELR* back to topmRNA from alignment at F-serratus_M_contig1032:4366..5088+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig1032.362.1 ID=mRNA_F-serratus_M_contig1032.362.1|Name=mRNA_F-serratus_M_contig1032.362.1|organism=Fucus serratus male|type=mRNA|length=723bp|location=Sequence derived from alignment at F-serratus_M_contig1032:4366..5088+ (Fucus serratus male) GTCGCCGTTCCCGTCCATGGCCCACGTCACCAACGCCCGCGCGAAGGAGT
CTCTTGCAGCTTGGCGCAATTTCCCGATCCTGAAATGTTGGATCCTGATC
GGGGAGCGACCCACCGTCGCCAACCCCAAGAGAATGAAGATGCAGTCCCT
GCTACGGGGAAAAATGCGGGTGACAACCGGGGTCCTCGAGCAGCTCAACG
CCATGAGCGAATTCCGGGTGCGGTCGTACATCGCGGAAGGCGACGACCCA
CACCTCACGCGGACCATCCTCATCGAGCACGGGGAGACGTTGGTCGATGC
CGTACTGACTCTTCTGTCCCTTGGGATCGAGTCGAAAGACGGGACCACGC
GCCTGGAGATACTCCCAAAGGTTCAGAAACGGCACCGACTTGATCCGCGA
CCACTGCCGCCAGCACTGGGGAAAAATGCAGGACCCCGAAAGCACCTCGG
ACAGGAAGCCTTGGATTTTACTTCCGCGGTCTTGGCCTCAAGCTCGTCGG
AAATCAGTTGCGGAATCGTCTCAGCGCAATTACGCGTCGGGTTTCCGGTC
TTGGTGCGTCTTTCGTGGGTTGATGAGCTCCGATAAGTTTGTGGCGAAGG
GGTGCATCGCCCGAAGAGTTGAGTTGGACCTTGATCGATTTTGCCGCGAG
GTGCTTTGAATCGAAAGGAAACCTAGCTAGACACACACGTCACCGAGTTT
CGTCTCCCTGTTACATGGAGAAT back to topCoding sequence (CDS) from alignment at F-serratus_M_contig1032:4366..5088+ >mRNA_F-serratus_M_contig1032.362.1 ID=mRNA_F-serratus_M_contig1032.362.1|Name=mRNA_F-serratus_M_contig1032.362.1|organism=Fucus serratus male|type=CDS|length=1140bp|location=Sequence derived from alignment at F-serratus_M_contig1032:4366..5088+ (Fucus serratus male) ATGGCCCACGTCACCAACGCCCGCGCGAAGGAGTCTCTTGCAGCTTGGCG CAATTTCCCGATCCTGAAATGTTGGATCCTGATCGGGGAGCGACCCACCG TCGCCAACCCCAAGAGAATGAAGATGCAGTCCCTGCTACGGGGAAAAATG CGGGTGACAACCGGGGTCCTCGAGCAGCTCAACGCCATGAGCGAATTCCG GGTGCGGTCGTACATCGCGGAAGGCGACGACCCACACCTCACGCGGACCA TCCTCATCGAGCACGGGGAGACGTTGGTCGATGCCGTACTGACTCTTCTG TCCCTTGGGATCGAGTCGAAAGACGGGACCACGCGCCTGGAGATACTCCC AAAGGTTCAGAAACGGCACCGACTTGATCCGCGACCACTGCCGCCAGCAC TGGGGAAAAATGCAGGACCCCGAAAGCACCTCGGACAGGAAGCCTTGGAT TTTACTTCCGCGGTCTTGGCCTCAAGCTCGTCGGAAATCAGTTGCGGAAT CGTCTCAGCGCAATTACGCGTCGGGTTTCCGGTCTTGGTGCGTCTTTCGT GGGTTGATGAGCTCCGATAAATGGCCCACGTCACCAACGCCCGCGCGAAG GAGTCTCTTGCAGCTTGGCGCAATTTCCCGATCCTGAAATGTTGGATCCT GATCGGGGAGCGACCCACCGTCGCCAACCCCAAGAGAATGAAGATGCAGT CCCTGCTACGGGGAAAAATGCGGGTGACAACCGGGGTCCTCGAGCAGCTC AACGCCATGAGCGAATTCCGGGTGCGGTCGTACATCGCGGAAGGCGACGA CCCACACCTCACGCGGACCATCCTCATCGAGCACGGGGAGACGTTGGTCG ATGCCGTACTGACTCTTCTGTCCCTTGGGATCGAGTCGAAAGACGGGACC ACGCGCCTGGAGATACTCCCAAAGGTTCAGAAACGGCACCGACTTGATCC GCGACCACTGCCGCCAGCACTGGGGAAAAATGCAGGACCCCGAAAGCACC TCGGACAGGAAGCCTTGGATTTTACTTCCGCGGTCTTGGCCTCAAGCTCG TCGGAAATCAGTTGCGGAATCGTCTCAGCGCAATTACGCGTCGGGTTTCC GGTCTTGGTGCGTCTTTCGTGGGTTGATGAGCTCCGATAA back to top
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