mRNA_F-serratus_M_contig1032.362.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1032.362.1
Unique NamemRNA_F-serratus_M_contig1032.362.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1032.362.1 vs. uniprot
Match: A0A6H5JPK1_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK1_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 9.470e-40
Identity = 80/121 (66.12%), Postives = 96/121 (79.34%), Query Frame = 2 
Query:    2 SPFPSMAHVTNARAKESLAAWRNFPILKCWILIGERPTVANPKRMKMQSLLRGKMRVTTGVLEQLNAMSEFRVRSYIAEGDDPHLTRTILIEHGETLVDAVLTLLSLGIESKDGTTRLEIL 364
            +P  SM HV NARAKESLAAW N  I+K W+L+GERPTVAN K + MQSL++  +RVT GVLEQLNAMS FRVR YIAE DDP+LT T L+EH ETLV A++ +L +GI S+DG TRLE+L
Sbjct:   76 APPMSMVHVQNARAKESLAAWHNLSIMKVWMLMGERPTVANLKLIDMQSLMQDAVRVTAGVLEQLNAMSGFRVRMYIAESDDPNLTSTNLVEHMETLVYAIMKVLKVGIGSEDGQTRLELL 196
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1032.362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JPK1_9PHAE9.470e-4066.12Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1032contigF-serratus_M_contig1032:4366..5088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size723
Cds size570
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1032.362.1prot_F-serratus_M_contig1032.362.1Fucus serratus malepolypeptideF-serratus_M_contig1032 4382..4951 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928843.2420194-UTR-F-serratus_M_contig1032:4365..43811622928843.2420194-UTR-F-serratus_M_contig1032:4365..4381Fucus serratus maleUTRF-serratus_M_contig1032 4366..4381 +
1690962597.3016577-UTR-F-serratus_M_contig1032:4365..43811690962597.3016577-UTR-F-serratus_M_contig1032:4365..4381Fucus serratus maleUTRF-serratus_M_contig1032 4366..4381 +
1622928843.268797-UTR-F-serratus_M_contig1032:4951..50881622928843.268797-UTR-F-serratus_M_contig1032:4951..5088Fucus serratus maleUTRF-serratus_M_contig1032 4952..5088 +
1690962597.3299472-UTR-F-serratus_M_contig1032:4951..50881690962597.3299472-UTR-F-serratus_M_contig1032:4951..5088Fucus serratus maleUTRF-serratus_M_contig1032 4952..5088 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928843.2570095-CDS-F-serratus_M_contig1032:4381..49511622928843.2570095-CDS-F-serratus_M_contig1032:4381..4951Fucus serratus maleCDSF-serratus_M_contig1032 4382..4951 +
1690962597.3121722-CDS-F-serratus_M_contig1032:4381..49511690962597.3121722-CDS-F-serratus_M_contig1032:4381..4951Fucus serratus maleCDSF-serratus_M_contig1032 4382..4951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1032.362.1

>prot_F-serratus_M_contig1032.362.1 ID=prot_F-serratus_M_contig1032.362.1|Name=mRNA_F-serratus_M_contig1032.362.1|organism=Fucus serratus male|type=polypeptide|length=190bp
MAHVTNARAKESLAAWRNFPILKCWILIGERPTVANPKRMKMQSLLRGKM
RVTTGVLEQLNAMSEFRVRSYIAEGDDPHLTRTILIEHGETLVDAVLTLL
SLGIESKDGTTRLEILPKVQKRHRLDPRPLPPALGKNAGPRKHLGQEALD
FTSAVLASSSSEISCGIVSAQLRVGFPVLVRLSWVDELR*
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mRNA from alignment at F-serratus_M_contig1032:4366..5088+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1032.362.1 ID=mRNA_F-serratus_M_contig1032.362.1|Name=mRNA_F-serratus_M_contig1032.362.1|organism=Fucus serratus male|type=mRNA|length=723bp|location=Sequence derived from alignment at F-serratus_M_contig1032:4366..5088+ (Fucus serratus male)
GTCGCCGTTCCCGTCCATGGCCCACGTCACCAACGCCCGCGCGAAGGAGT
CTCTTGCAGCTTGGCGCAATTTCCCGATCCTGAAATGTTGGATCCTGATC
GGGGAGCGACCCACCGTCGCCAACCCCAAGAGAATGAAGATGCAGTCCCT
GCTACGGGGAAAAATGCGGGTGACAACCGGGGTCCTCGAGCAGCTCAACG
CCATGAGCGAATTCCGGGTGCGGTCGTACATCGCGGAAGGCGACGACCCA
CACCTCACGCGGACCATCCTCATCGAGCACGGGGAGACGTTGGTCGATGC
CGTACTGACTCTTCTGTCCCTTGGGATCGAGTCGAAAGACGGGACCACGC
GCCTGGAGATACTCCCAAAGGTTCAGAAACGGCACCGACTTGATCCGCGA
CCACTGCCGCCAGCACTGGGGAAAAATGCAGGACCCCGAAAGCACCTCGG
ACAGGAAGCCTTGGATTTTACTTCCGCGGTCTTGGCCTCAAGCTCGTCGG
AAATCAGTTGCGGAATCGTCTCAGCGCAATTACGCGTCGGGTTTCCGGTC
TTGGTGCGTCTTTCGTGGGTTGATGAGCTCCGATAAGTTTGTGGCGAAGG
GGTGCATCGCCCGAAGAGTTGAGTTGGACCTTGATCGATTTTGCCGCGAG
GTGCTTTGAATCGAAAGGAAACCTAGCTAGACACACACGTCACCGAGTTT
CGTCTCCCTGTTACATGGAGAAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1032:4366..5088+

>mRNA_F-serratus_M_contig1032.362.1 ID=mRNA_F-serratus_M_contig1032.362.1|Name=mRNA_F-serratus_M_contig1032.362.1|organism=Fucus serratus male|type=CDS|length=1140bp|location=Sequence derived from alignment at F-serratus_M_contig1032:4366..5088+ (Fucus serratus male)
ATGGCCCACGTCACCAACGCCCGCGCGAAGGAGTCTCTTGCAGCTTGGCG
CAATTTCCCGATCCTGAAATGTTGGATCCTGATCGGGGAGCGACCCACCG
TCGCCAACCCCAAGAGAATGAAGATGCAGTCCCTGCTACGGGGAAAAATG
CGGGTGACAACCGGGGTCCTCGAGCAGCTCAACGCCATGAGCGAATTCCG
GGTGCGGTCGTACATCGCGGAAGGCGACGACCCACACCTCACGCGGACCA
TCCTCATCGAGCACGGGGAGACGTTGGTCGATGCCGTACTGACTCTTCTG
TCCCTTGGGATCGAGTCGAAAGACGGGACCACGCGCCTGGAGATACTCCC
AAAGGTTCAGAAACGGCACCGACTTGATCCGCGACCACTGCCGCCAGCAC
TGGGGAAAAATGCAGGACCCCGAAAGCACCTCGGACAGGAAGCCTTGGAT
TTTACTTCCGCGGTCTTGGCCTCAAGCTCGTCGGAAATCAGTTGCGGAAT
CGTCTCAGCGCAATTACGCGTCGGGTTTCCGGTCTTGGTGCGTCTTTCGT
GGGTTGATGAGCTCCGATAAATGGCCCACGTCACCAACGCCCGCGCGAAG
GAGTCTCTTGCAGCTTGGCGCAATTTCCCGATCCTGAAATGTTGGATCCT
GATCGGGGAGCGACCCACCGTCGCCAACCCCAAGAGAATGAAGATGCAGT
CCCTGCTACGGGGAAAAATGCGGGTGACAACCGGGGTCCTCGAGCAGCTC
AACGCCATGAGCGAATTCCGGGTGCGGTCGTACATCGCGGAAGGCGACGA
CCCACACCTCACGCGGACCATCCTCATCGAGCACGGGGAGACGTTGGTCG
ATGCCGTACTGACTCTTCTGTCCCTTGGGATCGAGTCGAAAGACGGGACC
ACGCGCCTGGAGATACTCCCAAAGGTTCAGAAACGGCACCGACTTGATCC
GCGACCACTGCCGCCAGCACTGGGGAAAAATGCAGGACCCCGAAAGCACC
TCGGACAGGAAGCCTTGGATTTTACTTCCGCGGTCTTGGCCTCAAGCTCG
TCGGAAATCAGTTGCGGAATCGTCTCAGCGCAATTACGCGTCGGGTTTCC
GGTCTTGGTGCGTCTTTCGTGGGTTGATGAGCTCCGATAA
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