mRNA_F-serratus_M_contig1030.350.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1030.350.1
Unique NamemRNA_F-serratus_M_contig1030.350.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1030.350.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1030contigF-serratus_M_contig1030:21259..24275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-14_004490.2
Exons5
Model size888
Cds size888
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1030.350.1prot_F-serratus_M_contig1030.350.1Fucus serratus malepolypeptideF-serratus_M_contig1030 21259..24275 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928839.187925-CDS-F-serratus_M_contig1030:21258..215871622928839.187925-CDS-F-serratus_M_contig1030:21258..21587Fucus serratus maleCDSF-serratus_M_contig1030 21259..21587 +
1690962595.4261415-CDS-F-serratus_M_contig1030:21258..215871690962595.4261415-CDS-F-serratus_M_contig1030:21258..21587Fucus serratus maleCDSF-serratus_M_contig1030 21259..21587 +
1622928839.202654-CDS-F-serratus_M_contig1030:22199..222731622928839.202654-CDS-F-serratus_M_contig1030:22199..22273Fucus serratus maleCDSF-serratus_M_contig1030 22200..22273 +
1690962595.4371493-CDS-F-serratus_M_contig1030:22199..222731690962595.4371493-CDS-F-serratus_M_contig1030:22199..22273Fucus serratus maleCDSF-serratus_M_contig1030 22200..22273 +
1622928839.2161777-CDS-F-serratus_M_contig1030:22779..229041622928839.2161777-CDS-F-serratus_M_contig1030:22779..22904Fucus serratus maleCDSF-serratus_M_contig1030 22780..22904 +
1690962595.4466636-CDS-F-serratus_M_contig1030:22779..229041690962595.4466636-CDS-F-serratus_M_contig1030:22779..22904Fucus serratus maleCDSF-serratus_M_contig1030 22780..22904 +
1622928839.2287-CDS-F-serratus_M_contig1030:23511..236461622928839.2287-CDS-F-serratus_M_contig1030:23511..23646Fucus serratus maleCDSF-serratus_M_contig1030 23512..23646 +
1690962595.4554894-CDS-F-serratus_M_contig1030:23511..236461690962595.4554894-CDS-F-serratus_M_contig1030:23511..23646Fucus serratus maleCDSF-serratus_M_contig1030 23512..23646 +
1622928839.2450953-CDS-F-serratus_M_contig1030:24050..242751622928839.2450953-CDS-F-serratus_M_contig1030:24050..24275Fucus serratus maleCDSF-serratus_M_contig1030 24051..24275 +
1690962595.4648864-CDS-F-serratus_M_contig1030:24050..242751690962595.4648864-CDS-F-serratus_M_contig1030:24050..24275Fucus serratus maleCDSF-serratus_M_contig1030 24051..24275 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1030.350.1

>prot_F-serratus_M_contig1030.350.1 ID=prot_F-serratus_M_contig1030.350.1|Name=mRNA_F-serratus_M_contig1030.350.1|organism=Fucus serratus male|type=polypeptide|length=296bp
VISERQSEKAIMAQSWHGGRGAGRGRNARWTSINTSRGHTTSLSTNVWTP
AIAAAAASSSKPSDPRNNVALSAYVAPATSPQVSVGATAAIVARKVESTH
VQPAVEARISIRKAAETVEASSEQSAAEMEIHLQNAEKKLVLVKVQEEEV
RAIVDAHLEREAALKALLEELYREHQEDQDSASTSSAQIADLDAADSAVT
CSPCAEQATPDPATSGESVPQLQQQPPPLPQQQQQDEGCELGETATSSPT
AKRKVASSSSGERMISTSPRAGASGEGSTVVAAGAAAVAAAVTAAA
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mRNA from alignment at F-serratus_M_contig1030:21259..24275+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1030.350.1 ID=mRNA_F-serratus_M_contig1030.350.1|Name=mRNA_F-serratus_M_contig1030.350.1|organism=Fucus serratus male|type=mRNA|length=3017bp|location=Sequence derived from alignment at F-serratus_M_contig1030:21259..24275+ (Fucus serratus male)
GTGATCTCGGAGCGGCAAAGCGAGAAGGCAATCATGGCTCAGTCGTGGCA
TGGTGGTCGAGGGGCAGGAAGAGGAAGGAACGCCCGTTGGACTAGTATAA
ATACCTCCCGTGGACACACAACTAGTCTATCGACTAATGTGTGGACGCCC
GCTATCGCAGCCGCGGCGGCGTCGTCGTCGAAGCCGTCAGACCCACGTAA
TAATGTTGCTCTCTCTGCATATGTTGCTCCAGCGACCAGTCCGCAAGTGT
CGGTGGGGGCAACCGCAGCGATTGTGGCAAGAAAAGTGGAATCTACTCAC
GTTCAACCGGCAGTGGAAGCACGAATCAGGTGAGGTCCGACAAGGTTGGC
ACTGCTGTGTTGCATGCGAACGTTGTACGCTGCTACCTGTATTGTTCCGC
GTTTGAGCCATGCCCTTTTTTGCAGCAGTCAGAACTGTTTGTATTCATAC
TCGGATACAGACAGCAGTACAGCATTTCCGCAGCATCATGAGAATATTTA
ATATTTTGACTTACTGAGAAGACCTCAACTTCAAGTGAGACTTCCTTGGG
GGTGCCACTCGCATCGAATGCCCACCTAGCTCTGCATTCGGTATCTCGAT
GCTTCAGCTCGCTTCTTGCAAAATACCGTACACGAAAACGAAGAACCCGC
CGGCCCGCTGGGGTGTCTTCCTGCGCCTTCTACTCGTGCATGTGCACGTC
TTCGCCCAGTCAGGCGCGGTGCGCAACTTTGTTGTAATAACGAGGTTATG
GTTAGGGCAGAGCCTGGTATGGGCGCAGCGAGTTTGTTCGGACGGCGTAC
TGCTGCAACACCCCCCTATACACGTGCCGCCGAATAACGCAGCACTATGA
AGCTCTGAATTTGCACCTCATTATTATTAATGCAAAAGTTCAAAAGTTTT
TGCCTCTTCTTCTTGCCCGACCCTTCTATTCCGAAAATCAGCATCCGGAA
GGCCGCCGAGACCGTAGAAGCGTCGTCCGAGCAGTCCGCCGCCGAGATGG
AAATCCATCTCCAAAGTGAGTAAAGGCAATACGGCAGACGGTGGCTCAAA
CTGCTGCTGCTCGTCGCGCAGCAGTGTTTTGCTTGCGTCTCCTCGCGTGC
TGCGCAGAATTTTGGACGAGACTGTAGATATTTTTTGGAGACACGGTTCT
GGGTTTTGACTGTTTTTTGTTTTTTTTATAGTGTCTTTATCCGAAGTGTT
CTCCGGGAAGGAGTAATCTGTGGCCAGTGCTTCCTTGTTCATGTAAGTTT
TGGCGGCACAAGACACTCCGTAGACACATCCCCCATTGGGGGTAGCACAT
GCGACAAGCTTGGACTGATTGACACCACAGAACTGCATTGCGCGATTGTG
CACAATCCAATAAAAAGTCACACAAACAGGTGACCTTCAGCGCCATCGAA
CACCGCGACTGAAGCCTCTCGCTCACCGAAATAGACACACAAGGCTTCGA
TGCTTTCAGCCTGCCCTGGCAGCTCAGGCTGCTCTGACTTCTCTCCCATC
TACTTTTAAACTTTTTCCCAGACGCGGAGAAGAAGCTGGTATTGGTCAAA
GTTCAGGAGGAGGAGGTTAGGGCAATCGTAGACGCGCACCTGGAGAGGGA
GGCCGCCCTCAAGGCGTTGCTCGAGGAGCTTTACAGGGAACACCAGGCAA
GTGGACGCGCGTGCATCACGCGTCGTGTCGTTGCAGCGATACCCCCCCCC
AAGGAAAAGTACGGTGGCAATCGAGCTCCGTTCTCTTCTGCCGTTGCCGT
TTTGCCTGGAGATGAACGAGTTCTCGGGATCGGCGGGGTTCGATCGTGGG
AAGAAGTTTACTCTCCCGCCAGTGCACGGTAGTCAGTGGGTGTACCTAAT
CGTGTTTGGCCTGCAACAGCAGAGCGGTGGCACACCGTCCGTGCGTCGTA
TTCGCTCGCGTAGAGTTTTTTTTCTCCGTCATGGTGCGTTCCTCATTTCT
TGACGCTCCCGTTTTGTGGGTGAGACTACCGCACGCTGCACGTACGTTAA
TCTCGTTTTGAAATTTGAGCCATCGACGCCGGAACACCCGTGCGCGGGCG
TTCTTGCAGAGGACGAGGAAGGTATCAGAGGGCTTGCTGCCCTCTGCCGA
AGAGACCACGCCCCGCACCCCGTTCCACGCGCAACGTACCGTGAGGCTGG
AGTAGCCCCCCGTGTGCTCTTGATGCCCTACGATTGTTTTTTATCTCACG
TGCTTCCCCTTCCCGTCGGATGGAACATGTTCCGCCTTTTGTTCCTGTCA
CAGGAAGACCAAGACTCCGCGTCGACATCAAGTGCACAGATCGCTGATCT
CGACGCTGCCGACTCCGCGGTGACCTGTAGCCCGTGTGCGGAACAAGCAA
CGCCCGACCCTGCTACAAGTGGGGAGTCTGTCCCCCAGGTATCGGAAATC
AAGATAGTACCGTACTGTTGTACACAAAAGAGATACGTCGCGTCTGGATT
AAATTGCGAATCGATCGCTTCTCTGTCGCGTGGGGAACAGGGGGAGGGGA
GGGGAAGGCGGGCGGACCTTGAAAGAGATTTTCTCCAGAGGTGGATTATA
ATTGCCTGACAGAGGGGGGTTTTAAGAGGCGTGCGGGGACGATAATATGT
TCATGACGACAGCGTTCCCATCGTTGAACGTCTTTCATTAAAACCCAATG
ACTAACGGTGGGCAAAACCCCTTTTAAGGGTTGAGCTCACCTGAAACGGG
ACTCCCGGTGGCCGGCCCCATCGTTTATCCTCCCCCCCCTTCCCCCCGCC
CATCCGACCCGACCGCACTTTTCGGAATGCCACACCTTATAGCTGCAGCA
GCAGCCGCCACCGCTGCCGCAGCAGCAGCAGCAAGACGAAGGCTGTGAGT
TGGGAGAGACCGCAACTTCGTCTCCGACAGCAAAGCGAAAAGTCGCCTCG
AGCTCCAGCGGCGAGCGCATGATTTCGACCAGTCCTCGTGCTGGGGCGAG
TGGGGAAGGGTCCACGGTAGTGGCTGCGGGGGCGGCTGCGGTGGCGGCTG
CGGTGACGGCTGCGGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1030:21259..24275+

>mRNA_F-serratus_M_contig1030.350.1 ID=mRNA_F-serratus_M_contig1030.350.1|Name=mRNA_F-serratus_M_contig1030.350.1|organism=Fucus serratus male|type=CDS|length=1776bp|location=Sequence derived from alignment at F-serratus_M_contig1030:21259..24275+ (Fucus serratus male)
GTGATCTCGGAGCGGCAAAGCGAGAAGGCAATCATGGCTCAGTCGTGGCA
TGGTGGTCGAGGGGCAGGAAGAGGAAGGAACGCCCGTTGGACTAGTATAA
ATACCTCCCGTGGACACACAACTAGTCTATCGACTAATGTGTGGACGCCC
GCTATCGCAGCCGCGGCGGCGTCGTCGTCGAAGCCGTCAGACCCACGTAA
TAATGTTGCTCTCTCTGCATATGTTGCTCCAGCGACCAGTCCGCAAGTGT
CGGTGGGGGCAACCGCAGCGATTGTGGCAAGAAAAGTGGAATCTACTCAC
GTTCAACCGGCAGTGGAAGCACGAATCAGGTGATCTCGGAGCGGCAAAGC
GAGAAGGCAATCATGGCTCAGTCGTGGCATGGTGGTCGAGGGGCAGGAAG
AGGAAGGAACGCCCGTTGGACTAGTATAAATACCTCCCGTGGACACACAA
CTAGTCTATCGACTAATGTGTGGACGCCCGCTATCGCAGCCGCGGCGGCG
TCGTCGTCGAAGCCGTCAGACCCACGTAATAATGTTGCTCTCTCTGCATA
TGTTGCTCCAGCGACCAGTCCGCAAGTGTCGGTGGGGGCAACCGCAGCGA
TTGTGGCAAGAAAAGTGGAATCTACTCACGTTCAACCGGCAGTGGAAGCA
CGAATCAGCATCCGGAAGGCCGCCGAGACCGTAGAAGCGTCGTCCGAGCA
GTCCGCCGCCGAGATGGAAATCCATCTCCAAACATCCGGAAGGCCGCCGA
GACCGTAGAAGCGTCGTCCGAGCAGTCCGCCGCCGAGATGGAAATCCATC
TCCAAAACGCGGAGAAGAAGCTGGTATTGGTCAAAGTTCAGGAGGAGGAG
GTTAGGGCAATCGTAGACGCGCACCTGGAGAGGGAGGCCGCCCTCAAGGC
GTTGCTCGAGGAGCTTTACAGGGAACACCAGACGCGGAGAAGAAGCTGGT
ATTGGTCAAAGTTCAGGAGGAGGAGGTTAGGGCAATCGTAGACGCGCACC
TGGAGAGGGAGGCCGCCCTCAAGGCGTTGCTCGAGGAGCTTTACAGGGAA
CACCAGGAAGACCAAGACTCCGCGTCGACATCAAGTGCACAGATCGCTGA
TCTCGACGCTGCCGACTCCGCGGTGACCTGTAGCCCGTGTGCGGAACAAG
CAACGCCCGACCCTGCTACAAGTGGGGAGTCTGTCCCCCAGGAAGACCAA
GACTCCGCGTCGACATCAAGTGCACAGATCGCTGATCTCGACGCTGCCGA
CTCCGCGGTGACCTGTAGCCCGTGTGCGGAACAAGCAACGCCCGACCCTG
CTACAAGTGGGGAGTCTGTCCCCCAGCTGCAGCAGCAGCCGCCACCGCTG
CCGCAGCAGCAGCAGCAAGACGAAGGCTGTGAGTTGGGAGAGACCGCAAC
TTCGTCTCCGACAGCAAAGCGAAAAGTCGCCTCGAGCTCCAGCGGCGAGC
GCATGATTTCGACCAGTCCTCGTGCTGGGGCGAGTGGGGAAGGGTCCACG
GTAGTGGCTGCGGGGGCGGCTGCGGTGGCGGCTGCGGTGACGGCTGCGGC
GCTGCAGCAGCAGCCGCCACCGCTGCCGCAGCAGCAGCAGCAAGACGAAG
GCTGTGAGTTGGGAGAGACCGCAACTTCGTCTCCGACAGCAAAGCGAAAA
GTCGCCTCGAGCTCCAGCGGCGAGCGCATGATTTCGACCAGTCCTCGTGC
TGGGGCGAGTGGGGAAGGGTCCACGGTAGTGGCTGCGGGGGCGGCTGCGG
TGGCGGCTGCGGTGACGGCTGCGGCG
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