mRNA_F-serratus_M_contig1029.326.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1029.326.1
Unique NamemRNA_F-serratus_M_contig1029.326.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1029.326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1029contigF-serratus_M_contig1029:100574..102188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size493
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1029.326.1prot_F-serratus_M_contig1029.326.1Fucus serratus malepolypeptideF-serratus_M_contig1029 100603..102066 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928832.8609333-UTR-F-serratus_M_contig1029:100573..1006021622928832.8609333-UTR-F-serratus_M_contig1029:100573..100602Fucus serratus maleUTRF-serratus_M_contig1029 100574..100602 +
1690962592.908756-UTR-F-serratus_M_contig1029:100573..1006021690962592.908756-UTR-F-serratus_M_contig1029:100573..100602Fucus serratus maleUTRF-serratus_M_contig1029 100574..100602 +
1622928832.912571-UTR-F-serratus_M_contig1029:102066..1021881622928832.912571-UTR-F-serratus_M_contig1029:102066..102188Fucus serratus maleUTRF-serratus_M_contig1029 102067..102188 +
1690962592.9624534-UTR-F-serratus_M_contig1029:102066..1021881690962592.9624534-UTR-F-serratus_M_contig1029:102066..102188Fucus serratus maleUTRF-serratus_M_contig1029 102067..102188 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928832.8710046-CDS-F-serratus_M_contig1029:100602..1006651622928832.8710046-CDS-F-serratus_M_contig1029:100602..100665Fucus serratus maleCDSF-serratus_M_contig1029 100603..100665 +
1690962592.9280071-CDS-F-serratus_M_contig1029:100602..1006651690962592.9280071-CDS-F-serratus_M_contig1029:100602..100665Fucus serratus maleCDSF-serratus_M_contig1029 100603..100665 +
1622928832.8823254-CDS-F-serratus_M_contig1029:101771..1018101622928832.8823254-CDS-F-serratus_M_contig1029:101771..101810Fucus serratus maleCDSF-serratus_M_contig1029 101772..101810 +
1690962592.9408708-CDS-F-serratus_M_contig1029:101771..1018101690962592.9408708-CDS-F-serratus_M_contig1029:101771..101810Fucus serratus maleCDSF-serratus_M_contig1029 101772..101810 +
1622928832.8975189-CDS-F-serratus_M_contig1029:101826..1020661622928832.8975189-CDS-F-serratus_M_contig1029:101826..102066Fucus serratus maleCDSF-serratus_M_contig1029 101827..102066 +
1690962592.953351-CDS-F-serratus_M_contig1029:101826..1020661690962592.953351-CDS-F-serratus_M_contig1029:101826..102066Fucus serratus maleCDSF-serratus_M_contig1029 101827..102066 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1029.326.1

>prot_F-serratus_M_contig1029.326.1 ID=prot_F-serratus_M_contig1029.326.1|Name=mRNA_F-serratus_M_contig1029.326.1|organism=Fucus serratus male|type=polypeptide|length=114bp
MEKAGWHAKRRAAAAEEDTFEVSFHWSQRQRVQRNVSNPALWAAEPGGGV
RFIWNSSISKSNNSFLHGLGHIVSSMPHVWDQTVINVNCVIRNELLLTGK
LAHMKTQRPAIRI*
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mRNA from alignment at F-serratus_M_contig1029:100574..102188+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1029.326.1 ID=mRNA_F-serratus_M_contig1029.326.1|Name=mRNA_F-serratus_M_contig1029.326.1|organism=Fucus serratus male|type=mRNA|length=1615bp|location=Sequence derived from alignment at F-serratus_M_contig1029:100574..102188+ (Fucus serratus male)
GACCCGACGAGGACGTGCTTCGTAGCTACATGGAGAAGGCGGGGTGGCAT
GCAAAGAGACGCGCCGCAGCGGCAGAGGAAGACACATTCGAGGTGAGCAC
TCGGATAGGCGTTCGAGTTGCCCCGGTCGCCGTCTAGCACATGGCCTTAT
AGCTTTTACCTACGGCCAAAGTGTCTCCCCGCTAGTCTAAACGCTTTGCA
TAGAAGGGCTTCTCGTGTGCCGAATCATATCCTCCGCGATATGTACTATA
CGAGGGATACTCCGGGGGCCTGTGAGATTTGTATACATGATGGACCGTCT
ACTTGATGCAGTTCCCCCACCCCGTTCCCCGTGAACAAGTATATAATGCT
GCTACGATGCACCCCCTCCACGCCAGCGACGGTTGCAGAACCGATTCCGT
GCATTTTCTCCCTCATTCTTATTGTTTTGGATGATCAGATATGTTCATAT
GAATGCTATTGTAAATGCAGGTCTATCACGCATTTTCTTTTTCAATTTGG
CCGGCTGTAGCGGTGAATATGCGGTATCTTCAGGTTTCTGCAATGGACGG
TTTTGGGGGGGTGGGCTTTCGTAGAAATACTCTATAATCGTTCTCATCCC
AGTCCCCGCCGTATGTTATTACTACACATTTATATTCACTCGACTAAATA
CACGAACTGTACTCTAATTCCCTCCCCGACTGGAAATCTAACCCCATGTT
CACGTTCGATTATAGCCCACGCGAATCCGAATTCTTCGGAGCATGCTGTC
CCGGCGATCATCGTATGGCCACCTCGTGGCAAGCTATACGTGTGGTGTCA
TCTGTGGCGTACAACCTTTGTGGGAGACGGAGGGGCAGCGCGAAGTTGCC
CGGTGTCTTGACGTAATATGACCAGACCCTACGCGCCGCCCTGCAACTAT
TTTCTCTTCCACTTGGCGTGTAAACGTCGAGCCCATCTCCGCACACACCC
GGATCCCAACTGCGTTGGTACACTTGACGTGGTCGACAGGTAAAGTTAGG
TCTATAACAGAACGCAAATAATCCACGCCACCCCTCCCCCCCCATCCCCC
CTTTATACCTTCGGGAGAAATCTTAACTCAAACTAAAAAAATGTGGAGGA
CTGTTAGAGGACGGGCTTTGAAAGCTCATGTCGCTCTCATTAACCCTTCG
TGTACGACGTGAACACTGTCGTGTTTCTCGAATCACTTTCGTTAACAGGT
TTCATTTCATTGGTCACAACGACAGCGAGTGCAACGAGTACTGTTCTCCA
GAGAATGTTTCCAACCCAGCTTTATGGGCGGCAGAACCGGGCGGAGGTGT
GCGATTCATCTGGAACTCCAGCATCAGCAAGAGTAACAATTCATTCCTAC
ATGGACTTGGCCACATCGTGTCGTCCATGCCACATGTCTGGGACCAAACC
GTCATCAACGTCAATTGTGTAATTCGCAACGAGTTGCTCCTGACAGGAAA
GCTGGCACACATGAAAACGCAACGTCCCGCCATTAGGATATAAATGTTGT
CGTTTCGAGGATAGATAATAGGCAACGAACTGCAATGCACACAGCCAATT
GCATAAGTTGCCCCTCACATGTGGCATTGGCTTCGACAAAAGTCGAAATC
CATGCTCGGAATCCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1029:100574..102188+

>mRNA_F-serratus_M_contig1029.326.1 ID=mRNA_F-serratus_M_contig1029.326.1|Name=mRNA_F-serratus_M_contig1029.326.1|organism=Fucus serratus male|type=CDS|length=684bp|location=Sequence derived from alignment at F-serratus_M_contig1029:100574..102188+ (Fucus serratus male)
ATGGAGAAGGCGGGGTGGCATGCAAAGAGACGCGCCGCAGCGGCAGAGGA
AGACACATTCGAGATGGAGAAGGCGGGGTGGCATGCAAAGAGACGCGCCG
CAGCGGCAGAGGAAGACACATTCGAGGTTTCATTTCATTGGTCACAACGA
CAGCGAGTGCAACGAGTTTCATTTCATTGGTCACAACGACAGCGAGTGCA
ACGAAATGTTTCCAACCCAGCTTTATGGGCGGCAGAACCGGGCGGAGGTG
TGCGATTCATCTGGAACTCCAGCATCAGCAAGAGTAACAATTCATTCCTA
CATGGACTTGGCCACATCGTGTCGTCCATGCCACATGTCTGGGACCAAAC
CGTCATCAACGTCAATTGTGTAATTCGCAACGAGTTGCTCCTGACAGGAA
AGCTGGCACACATGAAAACGCAACGTCCCGCCATTAGGATATAAAATGTT
TCCAACCCAGCTTTATGGGCGGCAGAACCGGGCGGAGGTGTGCGATTCAT
CTGGAACTCCAGCATCAGCAAGAGTAACAATTCATTCCTACATGGACTTG
GCCACATCGTGTCGTCCATGCCACATGTCTGGGACCAAACCGTCATCAAC
GTCAATTGTGTAATTCGCAACGAGTTGCTCCTGACAGGAAAGCTGGCACA
CATGAAAACGCAACGTCCCGCCATTAGGATATAA
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