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Homology
BLAST of mRNA_F-serratus_M_contig1023.311.1 vs. uniprot
Match: D7FIH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH6_ECTSI) HSP 1 Score: 179 bits (453), Expect = 1.170e-50 Identity = 114/262 (43.51%), Postives = 154/262 (58.78%), Query Frame = 1
Query: 1 QDAINQEVFSFSGLIRSLAELDAPPRPNSTPRQLRASLRWFVNEGSLERLPRHYLMRLAEACNTMPPFKKVLTRFMMKSTLVGWLRVEADAISDDDVALRRLLSDGSTLELAAGGVDGDSEGETCILVGKEVKLQQGEVAILCWERGLLRS-HWLGGNL-----------TRRPLDDHFSKAEIMAMLQSLQDWLSLYDEGDAS------SAPTASQSSSECYRREGF-RAIPPSMILHAPALLRLPPSLEGN-SPVCHLRV 726
+DA QEV SF L++ LA + + PRPNS+P QL+ S +WF EGSL+RLPR +L++L ++CNT+PPFK+ RF KS+LV WL EA +IS+DD+ALR+ D A + G E G ++ L EV +LCWERGLLRS HW +L +D+ +AE AML SL+ +LSLYD A+ S + + + G A+PPSM+LHAPALLR+ S G+ SP+CHLRV
Sbjct: 18 EDAKKQEVSSFPKLLQHLAMMASSPRPNSSPGQLQFSAKWFWKEGSLDRLPRQHLLQLIKSCNTVPPFKRATARFAPKSSLVSWLTTEATSISNDDLALRKQFYDE-----AKARISGQEE-------GSKLNLTAPEVLLLCWERGLLRSQHWPDAHLRWAADGATSGSAGTAVDEPIPEAEAKAMLGSLRAYLSLYDSPSATRNLRGRSLDDSVGADYDVLSSCGTGAALPPSMVLHAPALLRITHSANGSASPLCHLRV 267
BLAST of mRNA_F-serratus_M_contig1023.311.1 vs. uniprot
Match: A0A6H5JR55_9PHAE (LETM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR55_9PHAE) HSP 1 Score: 172 bits (437), Expect = 2.950e-46 Identity = 112/262 (42.75%), Postives = 151/262 (57.63%), Query Frame = 1
Query: 1 QDAINQEVFSFSGLIRSLAELDAPPRPNSTPRQLRASLRWFVNEGSLERLPRHYLMRLAEACNTMPPFKKVLTRFMMKSTLVGWLRVEADAISDDDVALRRLLSDGSTLELAAGGVDGDSEGETCILVGKEVKLQQGEVAILCWERGLLRS-HWLGGNL-----------TRRPLDDHFSKAEIMAMLQSLQDWLSLYDEGDAS------SAPTASQSSSECYRREGF-RAIPPSMILHAPALLRLPPSLEGN-SPVCHLRV 726
+DA QEV SF L++ LA + + PRPNS+P QL+ S WF EG+L RL R +L++L ++CNT+PPFK+ RF KS+LV WL EA +IS+DD+ALR+ D A + G E G ++ L EV +LCWERGLLRS HW +L +D+ +AE AML SL+ +LSLYD A+ S + + + G A+PPSM+LHAPALLR+ S G+ SP+CHLRV
Sbjct: 213 EDAKKQEVSSFPKLLQHLAMMASSPRPNSSPGQLQFSATWFWKEGNLNRLSREHLLQLMKSCNTVPPFKRATARFAPKSSLVSWLTTEATSISNDDLALRKQFYDE-----AKARISGQEE-------GSKLNLTAPEVLLLCWERGLLRSQHWPDAHLRWAADGATSGSAGTAVDEPIPEAEAKAMLGSLRAYLSLYDSPSATRNLRGRSLDDSVGADYDVLSSCGTGAALPPSMVLHAPALLRITHSANGSASPLCHLRV 462
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | expressed unknown protein |
Ec32 ortholog | Ec-28_000310.1 |
Exons | 4 |
Model size | 1033 |
Cds size | 594 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928828.9199662-UTR-F-serratus_M_contig1023:48911..49185 | 1622928828.9199662-UTR-F-serratus_M_contig1023:48911..49185 | Fucus serratus male | UTR | F-serratus_M_contig1023 48912..49185 - |
1690962591.4069376-UTR-F-serratus_M_contig1023:48911..49185 | 1690962591.4069376-UTR-F-serratus_M_contig1023:48911..49185 | Fucus serratus male | UTR | F-serratus_M_contig1023 48912..49185 - |
1622928829.009665-UTR-F-serratus_M_contig1023:50463..50512 | 1622928829.009665-UTR-F-serratus_M_contig1023:50463..50512 | Fucus serratus male | UTR | F-serratus_M_contig1023 50464..50512 - |
1690962591.4474964-UTR-F-serratus_M_contig1023:50463..50512 | 1690962591.4474964-UTR-F-serratus_M_contig1023:50463..50512 | Fucus serratus male | UTR | F-serratus_M_contig1023 50464..50512 - |
1622928829.0280085-UTR-F-serratus_M_contig1023:50955..51071 | 1622928829.0280085-UTR-F-serratus_M_contig1023:50955..51071 | Fucus serratus male | UTR | F-serratus_M_contig1023 50956..51071 - |
1690962591.457158-UTR-F-serratus_M_contig1023:50955..51071 | 1690962591.457158-UTR-F-serratus_M_contig1023:50955..51071 | Fucus serratus male | UTR | F-serratus_M_contig1023 50956..51071 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928828.9330492-CDS-F-serratus_M_contig1023:49185..49411 | 1622928828.9330492-CDS-F-serratus_M_contig1023:49185..49411 | Fucus serratus male | CDS | F-serratus_M_contig1023 49186..49411 - |
1690962591.4200609-CDS-F-serratus_M_contig1023:49185..49411 | 1690962591.4200609-CDS-F-serratus_M_contig1023:49185..49411 | Fucus serratus male | CDS | F-serratus_M_contig1023 49186..49411 - |
1622928828.9510384-CDS-F-serratus_M_contig1023:49765..50020 | 1622928828.9510384-CDS-F-serratus_M_contig1023:49765..50020 | Fucus serratus male | CDS | F-serratus_M_contig1023 49766..50020 - |
1690962591.4293716-CDS-F-serratus_M_contig1023:49765..50020 | 1690962591.4293716-CDS-F-serratus_M_contig1023:49765..50020 | Fucus serratus male | CDS | F-serratus_M_contig1023 49766..50020 - |
1622928828.9741023-CDS-F-serratus_M_contig1023:50350..50463 | 1622928828.9741023-CDS-F-serratus_M_contig1023:50350..50463 | Fucus serratus male | CDS | F-serratus_M_contig1023 50351..50463 - |
1690962591.4385784-CDS-F-serratus_M_contig1023:50350..50463 | 1690962591.4385784-CDS-F-serratus_M_contig1023:50350..50463 | Fucus serratus male | CDS | F-serratus_M_contig1023 50351..50463 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1023.311.1 >prot_F-serratus_M_contig1023.311.1 ID=prot_F-serratus_M_contig1023.311.1|Name=mRNA_F-serratus_M_contig1023.311.1|organism=Fucus serratus male|type=polypeptide|length=198bp
MRLAEACNTMPPFKKVLTRFMMKSTLVGWLRVEADAISDDDVALRRLLSD GSTLELAAGGVDGDSEGETCILVGKEVKLQQGEVAILCWERGLLRSHWLG GNLTRRPLDDHFSKAEIMAMLQSLQDWLSLYDEGDASSAPTASQSSSECY RREGFRAIPPSMILHAPALLRLPPSLEGNSPVCHLRVRPLEHTNGPL* back to topmRNA from alignment at F-serratus_M_contig1023:48912..51071- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig1023.311.1 ID=mRNA_F-serratus_M_contig1023.311.1|Name=mRNA_F-serratus_M_contig1023.311.1|organism=Fucus serratus male|type=mRNA|length=2160bp|location=Sequence derived from alignment at F-serratus_M_contig1023:48912..51071- (Fucus serratus male) CAGGATGCCATCAATCAAGAAGTTTTTTCGTTCTCGGGGTTGATACGGTC
CTTGGCTGAGCTTGATGCACCGCCCCGACCAAACAGCACACCTCGACAGC
TGCGGGCTTCGCTCAGGCGAGTCATTTCTCGACATCAGGCGCACATGCTC
ACCGTCACGCCTTGTTTTCACTCTGCATACTCTCGATTTCTCGAATGGAG
TACGCGCTTTGAAAGGGGTAAGGCAACAGGCAAAACCCTCTTGAAACGCC
CTAACTGAAGTAGCCCAAGCGATTGAAAGGGTCCCAAGGTTATGGTGTGA
CCTACGGGTCATGTCGATGGAGTTGCAGATGGCAATCGTTGCTCGTGACA
AACTATTAAAGGTACTTAGTATTAAATAGATCACGGTGCTCTCTGCACGG
TACTTTCGATCAAGACTTTTCGCAGCGGTTGTTCAGAACGGAGAAAGTAC
GCCTCGGCAAGCGAGGTCGTGAGTCCTCAAGAAGCCGTCTTAACTTACAA
GTGAAAGTCAGCATCGCGACTGAACTGCTCCCTGCTTGTCGCGAAAACTC
CATTGCCAGGTGGTTTGTCAACGAAGGCAGCCTTGAGCGCCTGCCGCGGC
ATTATCTGATGCGTCTAGCGGAGGCATGTAACACCATGCCTCCTTTTAAG
AAGGTCTTGACAAGATTCATGATGAAGTCCACGCTCGTTGGTTGGCTGCG
CGTGGAGGCTGACGCGATCAGGTAAAGAGGTTACTCCAACAACTTCAATC
TCGCGCCTGTAGATGCCAGTAAATGCACCATGGTACCATGACACCATGGC
GCAAATATCCCCGAGAGAGGTAGGGTAGAAAAAAATTGTTCCCAGATTCA
AGAATGAGGGTTCCCGGATCCGATATTAAAAAATTACCTTGGGGATCCCC
ACGAGTAAACGCGATGATGCACCTCATAGGTGAACGGCGAAAGTGCGCCG
TCCTGAGCAATCCAGGTAAAATCTGCGCGTTCTTCCCAAAACTTACGTTT
CATGCTGGTCCGCCCGCGGGTATTTTGGGCTGCTGTTCGATGCGTGCTCA
GCGACGACGATGTCGCACTTAGGCGGCTTCTTTCTGATGGCAGCACCCTG
GAGCTGGCAGCCGGTGGCGTAGATGGGGACAGCGAAGGCGAAACGTGTAT
TCTTGTTGGCAAGGAGGTGAAGCTGCAACAAGGAGAGGTGGCGATCTTAT
GCTGGGAGAGAGGGCTTTTGCGTTCTCATTGGCTGGGGGGGAATCTCACG
AGGAGGCCGCTAGACGATCACTTTTCCAAAGCTGAGATAATGGCGATGCT
CCAAAGGTAAGGCTCTCCTGAGGGTCTGCGCGAGAGCGCTCCGTCGCTGC
CAAAATGTACCGAGCTTCAAGCGTGCAAGTCTTGTCTCCAAAGATCCGTT
GATACCGTGGTTCTTAAAAGGTGCCTTGAGAATACTGGTCGCTTTTGCAC
TCTGCACCCAACTCAAATTCTCACACATCCTCCTACAATATGATGGGTTT
GGCTTGCAACGCGCTGCGTTAGAATTAGGTACCCGCCGCACAGCACGTGG
TACCCAATGCTATAACACCAATGCTGTTTGAGATTTCTCCCCCCTCATTC
TTATGCAGACCCACACCGATGCCGCCTCCGACCCTCTGTGAAAACCGTTG
GCCTTCGCAGCTTGCAGGATTGGTTGTCGCTTTACGATGAAGGCGATGCG
TCTTCTGCTCCCACGGCGTCGCAAAGCTCAAGCGAATGCTATCGTCGAGA
AGGATTCAGAGCCATTCCACCGTCAATGATTCTGCACGCGCCGGCATTGC
TCCGCCTCCCTCCTTCTCTGGAAGGCAATTCTCCGGTTTGCCATCTGCGG
GTTCGACCGCTGGAACACACCAACGGCCCATTGTAGCTGTCCGCATGCAG
TACCAACGATGTCTATCTATTAATAGTGCTCACGCCATGATTAGCGCATT
CGATGTAGTTTTTTAGCGTTCGTAAGCTGTCGCCACCGCAGGAGCATCGG
TTGCCATGTGTCGGTAACGTACATGTAGTACTCGCCCCTGATCCAACTTC
AGACTGGCGCTGTCAAGTCGTGCACCGAACAGCAGCCATAGATATTAATA
GCGGTCCTGCGTAGTGGCGGTCCTGCAATAATATCATATTACCGCCCTCG
TTTCCTCCTG back to topCoding sequence (CDS) from alignment at F-serratus_M_contig1023:48912..51071- >mRNA_F-serratus_M_contig1023.311.1 ID=mRNA_F-serratus_M_contig1023.311.1|Name=mRNA_F-serratus_M_contig1023.311.1|organism=Fucus serratus male|type=CDS|length=1188bp|location=Sequence derived from alignment at F-serratus_M_contig1023:48912..51071- (Fucus serratus male) ATGCGTCTAGCGGAGGCATGTAACACCATGCCTCCTTTTAAGAAGGTCTT GACAAGATTCATGATGAAGTCCACGCTCGTTGGTTGGCTGCGCGTGGAGG CTGACGCGATCAGATGCGTCTAGCGGAGGCATGTAACACCATGCCTCCTT TTAAGAAGGTCTTGACAAGATTCATGATGAAGTCCACGCTCGTTGGTTGG CTGCGCGTGGAGGCTGACGCGATCAGCGACGACGATGTCGCACTTAGGCG GCTTCTTTCTGATGGCAGCACCCTGGAGCTGGCAGCCGGTGGCGTAGATG GGGACAGCGAAGGCGAAACGTGTATTCTTGTTGGCAAGGAGGTGAAGCTG CAACAAGGAGAGGTGGCGATCTTATGCTGGGAGAGAGGGCTTTTGCGTTC TCATTGGCTGGGGGGGAATCTCACGAGGAGGCCGCTAGACGATCACTTTT CCAAAGCTGAGATAATGGCGATGCTCCAAAGCGACGACGATGTCGCACTT AGGCGGCTTCTTTCTGATGGCAGCACCCTGGAGCTGGCAGCCGGTGGCGT AGATGGGGACAGCGAAGGCGAAACGTGTATTCTTGTTGGCAAGGAGGTGA AGCTGCAACAAGGAGAGGTGGCGATCTTATGCTGGGAGAGAGGGCTTTTG CGTTCTCATTGGCTGGGGGGGAATCTCACGAGGAGGCCGCTAGACGATCA CTTTTCCAAAGCTGAGATAATGGCGATGCTCCAAAGCTTGCAGGATTGGT TGTCGCTTTACGATGAAGGCGATGCGTCTTCTGCTCCCACGGCGTCGCAA AGCTCAAGCGAATGCTATCGTCGAGAAGGATTCAGAGCCATTCCACCGTC AATGATTCTGCACGCGCCGGCATTGCTCCGCCTCCCTCCTTCTCTGGAAG GCAATTCTCCGGTTTGCCATCTGCGGGTTCGACCGCTGGAACACACCAAC GGCCCATTGTAGCTTGCAGGATTGGTTGTCGCTTTACGATGAAGGCGATG CGTCTTCTGCTCCCACGGCGTCGCAAAGCTCAAGCGAATGCTATCGTCGA GAAGGATTCAGAGCCATTCCACCGTCAATGATTCTGCACGCGCCGGCATT GCTCCGCCTCCCTCCTTCTCTGGAAGGCAATTCTCCGGTTTGCCATCTGC GGGTTCGACCGCTGGAACACACCAACGGCCCATTGTAG back to top
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