mRNA_F-serratus_M_contig1023.311.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig1023.311.1
Unique Name	mRNA_F-serratus_M_contig1023.311.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig1023.311.1 vs. uniprot
Match: D7FIH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH6_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 1.170e-50
Identity = 114/262 (43.51%), Postives = 154/262 (58.78%), Query Frame = 1

Query:    1 QDAINQEVFSFSGLIRSLAELDAPPRPNSTPRQLRASLRWFVNEGSLERLPRHYLMRLAEACNTMPPFKKVLTRFMMKSTLVGWLRVEADAISDDDVALRRLLSDGSTLELAAGGVDGDSEGETCILVGKEVKLQQGEVAILCWERGLLRS-HWLGGNL-----------TRRPLDDHFSKAEIMAMLQSLQDWLSLYDEGDAS------SAPTASQSSSECYRREGF-RAIPPSMILHAPALLRLPPSLEGN-SPVCHLRV 726
            +DA  QEV SF  L++ LA + + PRPNS+P QL+ S +WF  EGSL+RLPR +L++L ++CNT+PPFK+   RF  KS+LV WL  EA +IS+DD+ALR+   D      A   + G  E       G ++ L   EV +LCWERGLLRS HW   +L               +D+   +AE  AML SL+ +LSLYD   A+      S   +  +  +     G   A+PPSM+LHAPALLR+  S  G+ SP+CHLRV
Sbjct:   18 EDAKKQEVSSFPKLLQHLAMMASSPRPNSSPGQLQFSAKWFWKEGSLDRLPRQHLLQLIKSCNTVPPFKRATARFAPKSSLVSWLTTEATSISNDDLALRKQFYDE-----AKARISGQEE-------GSKLNLTAPEVLLLCWERGLLRSQHWPDAHLRWAADGATSGSAGTAVDEPIPEAEAKAMLGSLRAYLSLYDSPSATRNLRGRSLDDSVGADYDVLSSCGTGAALPPSMVLHAPALLRITHSANGSASPLCHLRV 267

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BLAST of mRNA_F-serratus_M_contig1023.311.1 vs. uniprot
Match: A0A6H5JR55_9PHAE (LETM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR55_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 2.950e-46
Identity = 112/262 (42.75%), Postives = 151/262 (57.63%), Query Frame = 1

Query:    1 QDAINQEVFSFSGLIRSLAELDAPPRPNSTPRQLRASLRWFVNEGSLERLPRHYLMRLAEACNTMPPFKKVLTRFMMKSTLVGWLRVEADAISDDDVALRRLLSDGSTLELAAGGVDGDSEGETCILVGKEVKLQQGEVAILCWERGLLRS-HWLGGNL-----------TRRPLDDHFSKAEIMAMLQSLQDWLSLYDEGDAS------SAPTASQSSSECYRREGF-RAIPPSMILHAPALLRLPPSLEGN-SPVCHLRV 726
            +DA  QEV SF  L++ LA + + PRPNS+P QL+ S  WF  EG+L RL R +L++L ++CNT+PPFK+   RF  KS+LV WL  EA +IS+DD+ALR+   D      A   + G  E       G ++ L   EV +LCWERGLLRS HW   +L               +D+   +AE  AML SL+ +LSLYD   A+      S   +  +  +     G   A+PPSM+LHAPALLR+  S  G+ SP+CHLRV
Sbjct:  213 EDAKKQEVSSFPKLLQHLAMMASSPRPNSSPGQLQFSATWFWKEGNLNRLSREHLLQLMKSCNTVPPFKRATARFAPKSSLVSWLTTEATSISNDDLALRKQFYDE-----AKARISGQEE-------GSKLNLTAPEVLLLCWERGLLRSQHWPDAHLRWAADGATSGSAGTAVDEPIPEAEAKAMLGSLRAYLSLYDSPSATRNLRGRSLDDSVGADYDVLSSCGTGAALPPSMVLHAPALLRITHSANGSASPLCHLRV 462

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig1023.311.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig1023.311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FIH6_ECTSI	1.170e-50	43.51	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JR55_9PHAE	2.950e-46	42.75	LETM1 domain-containing protein n=1 Tax=Ectocarpus...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig1023	contig	F-serratus_M_contig1023:48912..51071 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-28_000310.1
Exons	4
Model size	1033
Cds size	594
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig1023.311.1	prot_F-serratus_M_contig1023.311.1	Fucus serratus male	polypeptide	F-serratus_M_contig1023 49186..50463 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928828.9199662-UTR-F-serratus_M_contig1023:48911..49185	1622928828.9199662-UTR-F-serratus_M_contig1023:48911..49185	Fucus serratus male	UTR	F-serratus_M_contig1023 48912..49185 -
1690962591.4069376-UTR-F-serratus_M_contig1023:48911..49185	1690962591.4069376-UTR-F-serratus_M_contig1023:48911..49185	Fucus serratus male	UTR	F-serratus_M_contig1023 48912..49185 -
1622928829.009665-UTR-F-serratus_M_contig1023:50463..50512	1622928829.009665-UTR-F-serratus_M_contig1023:50463..50512	Fucus serratus male	UTR	F-serratus_M_contig1023 50464..50512 -
1690962591.4474964-UTR-F-serratus_M_contig1023:50463..50512	1690962591.4474964-UTR-F-serratus_M_contig1023:50463..50512	Fucus serratus male	UTR	F-serratus_M_contig1023 50464..50512 -
1622928829.0280085-UTR-F-serratus_M_contig1023:50955..51071	1622928829.0280085-UTR-F-serratus_M_contig1023:50955..51071	Fucus serratus male	UTR	F-serratus_M_contig1023 50956..51071 -
1690962591.457158-UTR-F-serratus_M_contig1023:50955..51071	1690962591.457158-UTR-F-serratus_M_contig1023:50955..51071	Fucus serratus male	UTR	F-serratus_M_contig1023 50956..51071 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928828.9330492-CDS-F-serratus_M_contig1023:49185..49411	1622928828.9330492-CDS-F-serratus_M_contig1023:49185..49411	Fucus serratus male	CDS	F-serratus_M_contig1023 49186..49411 -
1690962591.4200609-CDS-F-serratus_M_contig1023:49185..49411	1690962591.4200609-CDS-F-serratus_M_contig1023:49185..49411	Fucus serratus male	CDS	F-serratus_M_contig1023 49186..49411 -
1622928828.9510384-CDS-F-serratus_M_contig1023:49765..50020	1622928828.9510384-CDS-F-serratus_M_contig1023:49765..50020	Fucus serratus male	CDS	F-serratus_M_contig1023 49766..50020 -
1690962591.4293716-CDS-F-serratus_M_contig1023:49765..50020	1690962591.4293716-CDS-F-serratus_M_contig1023:49765..50020	Fucus serratus male	CDS	F-serratus_M_contig1023 49766..50020 -
1622928828.9741023-CDS-F-serratus_M_contig1023:50350..50463	1622928828.9741023-CDS-F-serratus_M_contig1023:50350..50463	Fucus serratus male	CDS	F-serratus_M_contig1023 50351..50463 -
1690962591.4385784-CDS-F-serratus_M_contig1023:50350..50463	1690962591.4385784-CDS-F-serratus_M_contig1023:50350..50463	Fucus serratus male	CDS	F-serratus_M_contig1023 50351..50463 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig1023:48912..51071-
coding sequence from alignment at F-serratus_M_contig1023:48912..51071-

protein sequence of mRNA_F-serratus_M_contig1023.311.1

>prot_F-serratus_M_contig1023.311.1 ID=prot_F-serratus_M_contig1023.311.1|Name=mRNA_F-serratus_M_contig1023.311.1|organism=Fucus serratus male|type=polypeptide|length=198bp
MRLAEACNTMPPFKKVLTRFMMKSTLVGWLRVEADAISDDDVALRRLLSD
GSTLELAAGGVDGDSEGETCILVGKEVKLQQGEVAILCWERGLLRSHWLG
GNLTRRPLDDHFSKAEIMAMLQSLQDWLSLYDEGDASSAPTASQSSSECY
RREGFRAIPPSMILHAPALLRLPPSLEGNSPVCHLRVRPLEHTNGPL*

mRNA from alignment at F-serratus_M_contig1023:48912..51071-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig1023.311.1 ID=mRNA_F-serratus_M_contig1023.311.1|Name=mRNA_F-serratus_M_contig1023.311.1|organism=Fucus serratus male|type=mRNA|length=2160bp|location=Sequence derived from alignment at F-serratus_M_contig1023:48912..51071- (Fucus serratus male)
CAGGATGCCATCAATCAAGAAGTTTTTTCGTTCTCGGGGTTGATACGGTC
CTTGGCTGAGCTTGATGCACCGCCCCGACCAAACAGCACACCTCGACAGC
TGCGGGCTTCGCTCAGGCGAGTCATTTCTCGACATCAGGCGCACATGCTC
ACCGTCACGCCTTGTTTTCACTCTGCATACTCTCGATTTCTCGAATGGAG
TACGCGCTTTGAAAGGGGTAAGGCAACAGGCAAAACCCTCTTGAAACGCC
CTAACTGAAGTAGCCCAAGCGATTGAAAGGGTCCCAAGGTTATGGTGTGA
CCTACGGGTCATGTCGATGGAGTTGCAGATGGCAATCGTTGCTCGTGACA
AACTATTAAAGGTACTTAGTATTAAATAGATCACGGTGCTCTCTGCACGG
TACTTTCGATCAAGACTTTTCGCAGCGGTTGTTCAGAACGGAGAAAGTAC
GCCTCGGCAAGCGAGGTCGTGAGTCCTCAAGAAGCCGTCTTAACTTACAA
GTGAAAGTCAGCATCGCGACTGAACTGCTCCCTGCTTGTCGCGAAAACTC
CATTGCCAGGTGGTTTGTCAACGAAGGCAGCCTTGAGCGCCTGCCGCGGC
ATTATCTGATGCGTCTAGCGGAGGCATGTAACACCATGCCTCCTTTTAAG
AAGGTCTTGACAAGATTCATGATGAAGTCCACGCTCGTTGGTTGGCTGCG
CGTGGAGGCTGACGCGATCAGGTAAAGAGGTTACTCCAACAACTTCAATC
TCGCGCCTGTAGATGCCAGTAAATGCACCATGGTACCATGACACCATGGC
GCAAATATCCCCGAGAGAGGTAGGGTAGAAAAAAATTGTTCCCAGATTCA
AGAATGAGGGTTCCCGGATCCGATATTAAAAAATTACCTTGGGGATCCCC
ACGAGTAAACGCGATGATGCACCTCATAGGTGAACGGCGAAAGTGCGCCG
TCCTGAGCAATCCAGGTAAAATCTGCGCGTTCTTCCCAAAACTTACGTTT
CATGCTGGTCCGCCCGCGGGTATTTTGGGCTGCTGTTCGATGCGTGCTCA
GCGACGACGATGTCGCACTTAGGCGGCTTCTTTCTGATGGCAGCACCCTG
GAGCTGGCAGCCGGTGGCGTAGATGGGGACAGCGAAGGCGAAACGTGTAT
TCTTGTTGGCAAGGAGGTGAAGCTGCAACAAGGAGAGGTGGCGATCTTAT
GCTGGGAGAGAGGGCTTTTGCGTTCTCATTGGCTGGGGGGGAATCTCACG
AGGAGGCCGCTAGACGATCACTTTTCCAAAGCTGAGATAATGGCGATGCT
CCAAAGGTAAGGCTCTCCTGAGGGTCTGCGCGAGAGCGCTCCGTCGCTGC
CAAAATGTACCGAGCTTCAAGCGTGCAAGTCTTGTCTCCAAAGATCCGTT
GATACCGTGGTTCTTAAAAGGTGCCTTGAGAATACTGGTCGCTTTTGCAC
TCTGCACCCAACTCAAATTCTCACACATCCTCCTACAATATGATGGGTTT
GGCTTGCAACGCGCTGCGTTAGAATTAGGTACCCGCCGCACAGCACGTGG
TACCCAATGCTATAACACCAATGCTGTTTGAGATTTCTCCCCCCTCATTC
TTATGCAGACCCACACCGATGCCGCCTCCGACCCTCTGTGAAAACCGTTG
GCCTTCGCAGCTTGCAGGATTGGTTGTCGCTTTACGATGAAGGCGATGCG
TCTTCTGCTCCCACGGCGTCGCAAAGCTCAAGCGAATGCTATCGTCGAGA
AGGATTCAGAGCCATTCCACCGTCAATGATTCTGCACGCGCCGGCATTGC
TCCGCCTCCCTCCTTCTCTGGAAGGCAATTCTCCGGTTTGCCATCTGCGG
GTTCGACCGCTGGAACACACCAACGGCCCATTGTAGCTGTCCGCATGCAG
TACCAACGATGTCTATCTATTAATAGTGCTCACGCCATGATTAGCGCATT
CGATGTAGTTTTTTAGCGTTCGTAAGCTGTCGCCACCGCAGGAGCATCGG
TTGCCATGTGTCGGTAACGTACATGTAGTACTCGCCCCTGATCCAACTTC
AGACTGGCGCTGTCAAGTCGTGCACCGAACAGCAGCCATAGATATTAATA
GCGGTCCTGCGTAGTGGCGGTCCTGCAATAATATCATATTACCGCCCTCG
TTTCCTCCTG

Coding sequence (CDS) from alignment at F-serratus_M_contig1023:48912..51071-

>mRNA_F-serratus_M_contig1023.311.1 ID=mRNA_F-serratus_M_contig1023.311.1|Name=mRNA_F-serratus_M_contig1023.311.1|organism=Fucus serratus male|type=CDS|length=1188bp|location=Sequence derived from alignment at F-serratus_M_contig1023:48912..51071- (Fucus serratus male)
ATGCGTCTAGCGGAGGCATGTAACACCATGCCTCCTTTTAAGAAGGTCTT
GACAAGATTCATGATGAAGTCCACGCTCGTTGGTTGGCTGCGCGTGGAGG
CTGACGCGATCAGATGCGTCTAGCGGAGGCATGTAACACCATGCCTCCTT
TTAAGAAGGTCTTGACAAGATTCATGATGAAGTCCACGCTCGTTGGTTGG
CTGCGCGTGGAGGCTGACGCGATCAGCGACGACGATGTCGCACTTAGGCG
GCTTCTTTCTGATGGCAGCACCCTGGAGCTGGCAGCCGGTGGCGTAGATG
GGGACAGCGAAGGCGAAACGTGTATTCTTGTTGGCAAGGAGGTGAAGCTG
CAACAAGGAGAGGTGGCGATCTTATGCTGGGAGAGAGGGCTTTTGCGTTC
TCATTGGCTGGGGGGGAATCTCACGAGGAGGCCGCTAGACGATCACTTTT
CCAAAGCTGAGATAATGGCGATGCTCCAAAGCGACGACGATGTCGCACTT
AGGCGGCTTCTTTCTGATGGCAGCACCCTGGAGCTGGCAGCCGGTGGCGT
AGATGGGGACAGCGAAGGCGAAACGTGTATTCTTGTTGGCAAGGAGGTGA
AGCTGCAACAAGGAGAGGTGGCGATCTTATGCTGGGAGAGAGGGCTTTTG
CGTTCTCATTGGCTGGGGGGGAATCTCACGAGGAGGCCGCTAGACGATCA
CTTTTCCAAAGCTGAGATAATGGCGATGCTCCAAAGCTTGCAGGATTGGT
TGTCGCTTTACGATGAAGGCGATGCGTCTTCTGCTCCCACGGCGTCGCAA
AGCTCAAGCGAATGCTATCGTCGAGAAGGATTCAGAGCCATTCCACCGTC
AATGATTCTGCACGCGCCGGCATTGCTCCGCCTCCCTCCTTCTCTGGAAG
GCAATTCTCCGGTTTGCCATCTGCGGGTTCGACCGCTGGAACACACCAAC
GGCCCATTGTAGCTTGCAGGATTGGTTGTCGCTTTACGATGAAGGCGATG
CGTCTTCTGCTCCCACGGCGTCGCAAAGCTCAAGCGAATGCTATCGTCGA
GAAGGATTCAGAGCCATTCCACCGTCAATGATTCTGCACGCGCCGGCATT
GCTCCGCCTCCCTCCTTCTCTGGAAGGCAATTCTCCGGTTTGCCATCTGC
GGGTTCGACCGCTGGAACACACCAACGGCCCATTGTAG