mRNA_F-serratus_M_contig1022.309.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1022.309.1 vs. uniprot
Match: A0A7R9TS91_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TS91_9VIRI) HSP 1 Score: 67.8 bits (164), Expect = 4.400e-8 Identity = 66/295 (22.37%), Postives = 101/295 (34.24%), Query Frame = 1 Query: 247 DAVSLNELIAGDYTEVLLTTYLLSGKFLLDMLPRLKTVPLLIVQGLKDKSPAVANLRTFMATHNPRAVVYTPKTIHIGLHHSKMILLKYRTGVRVVIMTCNMRMDCWAGRCQAAWYQDFPFKTATGACSIERKREGXXXXXXXXXXXXXXXXSAWDAWEFEGEEEDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDNEVIVTSEFEITLIDYFDRVGGPAATFGRS------LEAYDFSSANVVLIPSVPGRHSGKNLYRYGHMRVRDVLRKE 1113 + V L +++ GD+ ++ YL+ FLL LP L + V SP + L +A + Y P + G HHSK+ +L + GVRVV+ T N+ Q W QDFP KT +++ TS FE L+ YF+ P T L + F +A + + SVPGRH+G +L ++GH+ VR+ LR++ Sbjct: 83 ERVGLADVVEGDFEWAIVCDYLIDPAFLLRELPALGRCGRVCVFTDSRNSPR-STLGPALACAPAFELYYPPLPLQYGTHHSKLFVLVFDKGVRVVVHTSNLIYSDVRDMAQGLWTQDFPLKTL----------------------------------------------------------------------------------------------DQLGETSPFEDALVAYFEATKWPGTTVNGDRASVGVLRRFSFVNATAMFVASVPGRHTGASLKKWGHLAVREALRRD 282
BLAST of mRNA_F-serratus_M_contig1022.309.1 vs. uniprot
Match: D0MRF5_PHYIT (Tyrosyl-DNA phosphodiesterase, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MRF5_PHYIT) HSP 1 Score: 68.6 bits (166), Expect = 4.460e-8 Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 1 Query: 916 TSEFEITLIDYFDRVGGPAATFGRSLEAYDFSSANVVLIPSVPGRHSGKNLYRYGHMRVRDV 1101 +S+FE L+ Y +G P F L+ +DFSSA V L+PSVPG H GK++ +YGH+RVR++ Sbjct: 177 SSDFEADLVHYLSSLGAPVKLFCGELKRFDFSSARVALVPSVPGVHKGKDMEKYGHLRVRNL 238
BLAST of mRNA_F-serratus_M_contig1022.309.1 vs. uniprot
Match: A0A024UQE5_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQE5_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 5.820e-8 Identity = 44/114 (38.60%), Postives = 65/114 (57.02%), Query Frame = 1 Query: 919 SEFEITLIDYFDRVGGPAATF--GRSLEAYDFSSANVVLIPSVPGRHSG-KNLYRYGHMRVRDVLRKEVVHVRPGNHRVLFQVASIMNLSKKPYKWLGEITESFMAEKATPGQV 1251 S FE L+DY + A T YDFS+ANVVL+ SVPG + G ++++YGH+RV+ VL++ HV P +H ++ Q +S+ +L +K WL E SF+ T G Sbjct: 180 STFEADLLDYMTALKCSAVTALCREQFLKYDFSTANVVLVASVPGVYRGIHDMHKYGHLRVKKVLQQ---HVAPHSHPLVCQYSSLGSLDEK---WLHEFYTSFVPGSGTTGSA 287
BLAST of mRNA_F-serratus_M_contig1022.309.1 vs. uniprot
Match: A0A1X7TPU7_AMPQE (zf-CCHH domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TPU7_AMPQE) HSP 1 Score: 67.4 bits (163), Expect = 6.580e-8 Identity = 72/303 (23.76%), Postives = 106/303 (34.98%), Query Frame = 1 Query: 307 YLLSGKFLLDMLPRLK-TVPLLIVQGLKDKSPAVANLRTFMATHNPRAVVYTPKTIHIGLHHSKMILLKYRTGVRVVIMTCNMRMDCWAGRCQAAWYQD-FPFKTATGACSIERKREGXXXXXXXXXXXXXXXXSAWDAWEFEGEEEDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDNEVIVTSEFEITLIDYFDRVGGPAAT-FGRSLEAYDFSSANVVLIPSVPGRHSGKNLYRYGHMRVRDVLRKE--VVHVRPGNHRVLFQVASIMNLSKKPYKWL 1200 Y+ K+LLD P K ++PLLIV G + + +LR H P + K G HHSKM+LL Y G+RVVI T N+ W + Q W FP T +C +F+ L+ Y D G A + ++++D SS +I SVPG H+G N++++GHM++R VL + + V+ Q +SI +L P WL Sbjct: 140 YMFDIKWLLDQYPEDKRSLPLLIVHGFQGRE--FESLRMDSLPH-PNIKLLQAKLDLFGTHHSKMMLLSYNEGLRVVIHTANLIQKDWDQKTQGVWMSPVFPKSTVKRSC-------------------------------------------------------------------------------------------------KFQDDLLSYLDTYTGAAMNEWKEKVKSHDMSSCRAHIIASVPGPHTGLNIFKWGHMKLRKVLEEHGPSASTTTKDWPVIGQFSSIGSLGPAPSSWL 342
BLAST of mRNA_F-serratus_M_contig1022.309.1 vs. uniprot
Match: A0A5J4TRY7_9EUKA (Putative Tyrosyl-DNA phosphodiesterase 1 n=1 Tax=Streblomastix strix TaxID=222440 RepID=A0A5J4TRY7_9EUKA) HSP 1 Score: 63.5 bits (153), Expect = 1.210e-7 Identity = 40/122 (32.79%), Postives = 60/122 (49.18%), Query Frame = 1 Query: 250 AVSLNELIAGDYTEVLLTTYLLSGKFLLDMLPRLKTVPLLIVQGLK---DKSPAVANLRTFMATHNPRAVVYTPKTIHIGLHHSKMILLKYRTGVRVVIMTCNMRMDCWAGRCQAAWYQDFP 606 +V L+ L +LTTY+ ++L P L+ VP+L + G D P +RT + + + G HSK++LLKY TG+RVV+ + N+ W + QA W QDFP Sbjct: 39 SVRLSSLFDNSLQSAVLTTYIGEIDWVLRQAPILRRVPVLYLNGRNEHHDILPKHFKVRTML------------EDVQYGTFHSKIMLLKYPTGLRVVVTSANLVHSDWESKTQAIWCQDFP 148 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1022.309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pages
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1022.309.1 >prot_F-serratus_M_contig1022.309.1 ID=prot_F-serratus_M_contig1022.309.1|Name=mRNA_F-serratus_M_contig1022.309.1|organism=Fucus serratus male|type=polypeptide|length=787bp LTGDGTSAEQKADSGVSQGEVLSQSIGSDWFSPSSAKRRAGPISGGGDKKback to top mRNA from alignment at F-serratus_M_contig1022:294870..312800+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1022.309.1 ID=mRNA_F-serratus_M_contig1022.309.1|Name=mRNA_F-serratus_M_contig1022.309.1|organism=Fucus serratus male|type=mRNA|length=17931bp|location=Sequence derived from alignment at F-serratus_M_contig1022:294870..312800+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1022:294870..312800+ >mRNA_F-serratus_M_contig1022.309.1 ID=mRNA_F-serratus_M_contig1022.309.1|Name=mRNA_F-serratus_M_contig1022.309.1|organism=Fucus serratus male|type=CDS|length=4722bp|location=Sequence derived from alignment at F-serratus_M_contig1022:294870..312800+ (Fucus serratus male)back to top |