mRNA_F-serratus_M_contig1022.304.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1022.304.1
Unique NamemRNA_F-serratus_M_contig1022.304.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1022.304.1 vs. uniprot
Match: D7FIK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK4_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 3.350e-26
Identity = 63/99 (63.64%), Postives = 74/99 (74.75%), Query Frame = 1 
Query:    1 MQEEQKRERKNKYSSMARAHANRLREVVTRLSLSLEAVDTKDKFNHIQGVGDYVHKTGGKYLSGQVSARNDKHRPPEKVFVSSAAAILVAMRREAVRRA 297
            + EEQK+ RKN+ SS AR  A   REVV RLSLSLEAVDTKDKF+   GVG+ + K G K+L+ QV+ARN KH+P  K FV+SAAAILVAM RE  RRA
Sbjct:   44 LMEEQKKARKNRGSSSARLTATLFREVVARLSLSLEAVDTKDKFSCTPGVGEMIQKMGAKHLAAQVTARNPKHQPSNKTFVASAAAILVAMSREVKRRA 142
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BLAST of mRNA_F-serratus_M_contig1022.304.1 vs. uniprot
Match: A0A6H5KF35_9PHAE (ERCC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF35_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 3.840e-17
Identity = 54/90 (60.00%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:    7 EEQKRERKNKYSSMARAHANRLREVVTRLSLSLEAVDTKDKFNHIQGVGDYVHKTGGKYLSGQVSARNDKHRPPEKVFVSSAAAILVAMR 276
            EEQK+ RKN+ SS AR  A   REVV RLSLSLEAVDTKDKF+   GVG+ V            +ARN KH+P  K FV+SAAAILVAMR
Sbjct:   46 EEQKKARKNRGSSSARLTATLFREVVARLSLSLEAVDTKDKFSCTPGVGEMV------------TARNPKHQPSNKTFVASAAAILVAMR 123
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1022.304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIK4_ECTSI3.350e-2663.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KF35_9PHAE3.840e-1760.00ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1022contigF-serratus_M_contig1022:148978..150427 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size303
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1022.304.1prot_F-serratus_M_contig1022.304.1Fucus serratus malepolypeptideF-serratus_M_contig1022 148978..150427 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928827.4257283-CDS-F-serratus_M_contig1022:148977..1490051622928827.4257283-CDS-F-serratus_M_contig1022:148977..149005Fucus serratus maleCDSF-serratus_M_contig1022 148978..149005 -
1690962590.6465201-CDS-F-serratus_M_contig1022:148977..1490051690962590.6465201-CDS-F-serratus_M_contig1022:148977..149005Fucus serratus maleCDSF-serratus_M_contig1022 148978..149005 -
1622928827.4492502-CDS-F-serratus_M_contig1022:149697..1498131622928827.4492502-CDS-F-serratus_M_contig1022:149697..149813Fucus serratus maleCDSF-serratus_M_contig1022 149698..149813 -
1690962590.6567721-CDS-F-serratus_M_contig1022:149697..1498131690962590.6567721-CDS-F-serratus_M_contig1022:149697..149813Fucus serratus maleCDSF-serratus_M_contig1022 149698..149813 -
1622928827.4653435-CDS-F-serratus_M_contig1022:150268..1504271622928827.4653435-CDS-F-serratus_M_contig1022:150268..150427Fucus serratus maleCDSF-serratus_M_contig1022 150269..150427 -
1690962590.6699843-CDS-F-serratus_M_contig1022:150268..1504271690962590.6699843-CDS-F-serratus_M_contig1022:150268..150427Fucus serratus maleCDSF-serratus_M_contig1022 150269..150427 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1022.304.1

>prot_F-serratus_M_contig1022.304.1 ID=prot_F-serratus_M_contig1022.304.1|Name=mRNA_F-serratus_M_contig1022.304.1|organism=Fucus serratus male|type=polypeptide|length=101bp
MQEEQKRERKNKYSSMARAHANRLREVVTRLSLSLEAVDTKDKFNHIQGV
GDYVHKTGGKYLSGQVSARNDKHRPPEKVFVSSAAAILVAMRREAVRRAQ
S
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mRNA from alignment at F-serratus_M_contig1022:148978..150427-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1022.304.1 ID=mRNA_F-serratus_M_contig1022.304.1|Name=mRNA_F-serratus_M_contig1022.304.1|organism=Fucus serratus male|type=mRNA|length=1450bp|location=Sequence derived from alignment at F-serratus_M_contig1022:148978..150427- (Fucus serratus male)
ATGCAGGAAGAACAGAAGAGGGAGAGGAAGAACAAATACAGCAGCATGGC
TCGAGCTCACGCGAACCGGCTCCGGGAGGTGGTGACTCGCCTCAGCCTCT
CCTTGGAAGCCGTCGACACCAAGGACAAGTTCAACCACATCCAGGGGGTC
GGCGACTATGTGCGACCAAGTCTCCTTTGCATTTTTTTTCTTTTTTCTTT
CTCTTACCGAACGTGTGAACTGAGACGTCGCGTAATAGAGGGCGCAAGTC
ACGAGGAAGATTTTAAGGTATCATCAGCACGGGCGGCGAAAAACGTGACT
TTGTGATGTGCGCGATTTCCACCCGCACGTGCGAGTCCTTGACTGCCGTT
CTCTCTTTTTTTGTAGTGGTGCTCCCGCGATAACGCTACGGTTCATCGGT
ACACCGCACCCTGCAGTATAATAGTATCCGTGCCGCAGAACTAGCCAATC
TCAGTTTGGAAACGGGCGCGAAACAGAAAACACGAAACGAAACATCCGAC
GAAGACGAACCGAAACACGGCACATCGAAAGACACATCGACATGACGACA
CGAAACGAAGCGGAGCTTTTGACGCGGAATACGAAACGGTAAATGAAACT
GCATGGCGCGCCAGGTGCACAAGACTGGGGGCAAGTACCTGAGTGGTCAG
GTGAGCGCCAGGAACGACAAGCACAGGCCACCGGAGAAGGTGTTCGTGAG
CTCGGCCGCGGCAATCCTCGTCGCAATGAGGTAACACACGCAGCTACAAT
TTTACCTGGCTTCAATTACTAAACCCTAAAGAGTTGAGTAAATGTCGGGA
TTGTTTTTTAGTCCGACGTCACTGGTGTGTTGTAGGTAGGTATCCCTTCC
AGTCGATGTTTTTTTCCCACAAGCAGGCCCGATCATCTTGCGACAGAACT
CTCAGGAGCAACTGCCCCCGCCGCCCCTCCCACGTCACAAAACCACCAAA
GCAATTCGTCTCTGCCGTGGGTGCAGACGACACCAAAAACTTTCAGCGGC
ACGGGAGATATACCCAGTCTCTGTCGCGTCTCCTTCTGCGCCTGCCATGA
AATCGTTGAACGAATTTGTGGGGGGGGGGAATTCAACGATCGCGTCCCCG
GGGATGTCATCAAAACAGCCCCTCTCGGGCATGGGATTGCATGATCCCCT
ACATGGTTAGTAAGTTTGCCCCGAACTCAACCCATTTCACCACGGGGTTA
ATCAAATCTATATCCGGGAGGGGATTTTTTTGCTGTTCCTCCCTAAACCT
GGGGACAAATTCAGGACAACCCCGCCCCATTCGATTTACACTTTTCACGC
CTGGCTGAGGCAGCAGCAGCAGCAGCAGCAGCAACATCGTTGTCTTCCTT
ATTTCTCGTGTTCACAAAAGAGCAACACCGCCGTTTCATGTCGCTTCTGG
GAAACCCCCCATCGCCAAACAGGCGCGAGGCCGTACGACGCGCGCAGTCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1022:148978..150427-

>mRNA_F-serratus_M_contig1022.304.1 ID=mRNA_F-serratus_M_contig1022.304.1|Name=mRNA_F-serratus_M_contig1022.304.1|organism=Fucus serratus male|type=CDS|length=606bp|location=Sequence derived from alignment at F-serratus_M_contig1022:148978..150427- (Fucus serratus male)
ATGCAGGAAGAACAGAAGAGGGAGAGGAAGAACAAATACAGCAGCATGGC
TCGAGCTCACGCGAACCGGCTCCGGGAGGTGGTGACTCGCCTCAGCCTCT
CCTTGGAAGCCGTCGACACCAAGGACAAGTTCAACCACATCCAGGGGGTC
GGCGACTATATGCAGGAAGAACAGAAGAGGGAGAGGAAGAACAAATACAG
CAGCATGGCTCGAGCTCACGCGAACCGGCTCCGGGAGGTGGTGACTCGCC
TCAGCCTCTCCTTGGAAGCCGTCGACACCAAGGACAAGTTCAACCACATC
CAGGGGGTCGGCGACTATGTGCACAAGACTGGGGGCAAGTACCTGAGTGG
TCAGGTGAGCGCCAGGAACGACAAGCACAGGCCACCGGAGAAGGTGTTCG
TGAGCTCGGCCGCGGCAATCCTCGTCGCAATGAGGTGCACAAGACTGGGG
GCAAGTACCTGAGTGGTCAGGTGAGCGCCAGGAACGACAAGCACAGGCCA
CCGGAGAAGGTGTTCGTGAGCTCGGCCGCGGCAATCCTCGTCGCAATGAG
GCGCGAGGCCGTACGACGCGCGCAGTCCGCGCGAGGCCGTACGACGCGCG
CAGTCC
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