mRNA_F-serratus_M_contig1022.303.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1022.303.1
Unique NamemRNA_F-serratus_M_contig1022.303.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1022.303.1 vs. uniprot
Match: A0A182IYC0_9DIPT (ERCC4 domain-containing protein n=1 Tax=Anopheles atroparvus TaxID=41427 RepID=A0A182IYC0_9DIPT)

HSP 1 Score: 68.2 bits (165), Expect = 4.560e-8
Identity = 61/217 (28.11%), Postives = 94/217 (43.32%), Query Frame = 1 
Query:  772 PRVRLLIDSREKGGASRRSKLSELTSYLNSRAVAYEVREWKCGDYGWVVQPDAGKRFSPGDLGHEREFVVPRLLERKRVDDLAESMKDGRLARQKKAMLRARAQGAISDLEIHLEGATEDSCYRDEISRRGLTPADLD-----------AVLEQSKMDGF--KIVHHLHFADFSAHLADATIALQKEFDARTLP---FESFVSWRNFVRICRDQPLL 1374
            P+  LL+D+ E  G S+ S L +    L   ++ +EVR    GD+ W+V+ D G           REF++P ++ERKR+DDLA S+KDGR   QK  +        I  +E HL    +       +++  L     D            V+  S M  F    + +  F D +   A    +L   F ++T+P   FE F    +  R C  Q + 
Sbjct:  182 PKAILLVDTGETIGKSK-SSLDKTLKELAQYSIEHEVRRLSVGDFAWIVKDDTG-----------REFLLPYIIERKRMDDLASSIKDGRFHEQKFRLKNCGLANVIYLIE-HLGNNRQVGVPESTLTQAALNTYVQDFTVKFTENHHHTVMYLSVMSKFINNSLKNKSFLDITNRSASDESSLAFSFTSQTVPLLSFEHFYKQSSKTRDCSVQDVF 385
[Close]
BLAST of mRNA_F-serratus_M_contig1022.303.1 vs. uniprot
Match: A0A182M6B1_9DIPT (ERCC4 domain-containing protein n=1 Tax=Anopheles culicifacies TaxID=139723 RepID=A0A182M6B1_9DIPT)

HSP 1 Score: 67.8 bits (164), Expect = 4.840e-8
Identity = 37/95 (38.95%), Postives = 55/95 (57.89%), Query Frame = 1 
Query:  772 PRVRLLIDSREKGGASRRSKLSELTSYLNSRAVAYEVREWKCGDYGWVVQPDAGKRFSPGDLGHEREFVVPRLLERKRVDDLAESMKDGRLARQK 1056
            P+  LL+D+ E  G ++ S L      L   ++ YEVR    GD+ W+V+ D+           ++EF++P +LERKR+DDLA S+KDGR   QK
Sbjct:  128 PKAILLVDTGETIGKTK-SSLDRTLQQLAQHSIEYEVRRLSVGDFAWIVKDDS-----------KQEFLLPYILERKRIDDLASSIKDGRFHEQK 210
[Close]
BLAST of mRNA_F-serratus_M_contig1022.303.1 vs. uniprot
Match: A0A182QZJ7_9DIPT (ERCC4 domain-containing protein n=1 Tax=Anopheles farauti TaxID=69004 RepID=A0A182QZJ7_9DIPT)

HSP 1 Score: 67.8 bits (164), Expect = 6.040e-8
Identity = 40/97 (41.24%), Postives = 57/97 (58.76%), Query Frame = 1 
Query:  766 ARPRVRLLIDSREKGGASRRSKLSELTSYLNSRAVAYEVREWKCGDYGWVVQPDAGKRFSPGDLGHEREFVVPRLLERKRVDDLAESMKDGRLARQK 1056
            ++P+  LL+D+ E  G S+ S L      L   +V +EVR    GD+ W+V+ DAG           REF++P ++ERKR+DDLA S+KDGR   QK
Sbjct:  182 SQPKAILLVDTCETIGKSK-SGLDRTLQELAQYSVEHEVRRLSVGDFAWIVKDDAG-----------REFLLPYVVERKRLDDLASSIKDGRFHEQK 266
[Close]
BLAST of mRNA_F-serratus_M_contig1022.303.1 vs. uniprot
Match: A0A182I722_ANOAR (ERCC4 domain-containing protein n=8 Tax=gambiae species complex TaxID=44542 RepID=A0A182I722_ANOAR)

HSP 1 Score: 67.8 bits (164), Expect = 6.080e-8
Identity = 42/98 (42.86%), Postives = 57/98 (58.16%), Query Frame = 1 
Query:  772 PRVRLLIDSREKGGASRRS---KLSELTSYLNSRAVAYEVREWKCGDYGWVVQPDAGKRFSPGDLGHEREFVVPRLLERKRVDDLAESMKDGRLARQK 1056
            P+  LL+D+ E  G S+      L ELT Y    AV +EVR    GD+ W+V+ D+G           REF++P ++ERKR+DDLA S+KDGR   QK
Sbjct:  186 PKAILLVDTCETIGKSKSGLDRTLQELTQY----AVEHEVRRLSVGDFAWIVRNDSG-----------REFLLPYVVERKRMDDLASSIKDGRFHEQK 268
[Close]
BLAST of mRNA_F-serratus_M_contig1022.303.1 vs. uniprot
Match: F2UNC4_SALR5 (ERCC4 domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UNC4_SALR5)

HSP 1 Score: 68.2 bits (165), Expect = 6.390e-8
Identity = 51/158 (32.28%), Postives = 79/158 (50.00%), Query Frame = 1 
Query:  769 RPRVRLLIDSREKGGASRRSKLSELTSYLNSRAVAYEVREWKCGDYGWVVQPDAGKRFSPGDLGHEREFVVPRLLERKRVDDLAESMKDGRLARQKKAMLRARAQGAISDLEIHLEGATED-----SCYRDEISRRG-LTPADLDAVLEQSKMDGFKI 1224
            RP V LL+DSRE GG  R   L E+ + L+   V +       GDYGW  +   G            E ++P L+ERKR+DDL++S+ DGR   Q   M+++R     + L   +EG          C R  IS+ G  T ++++A L++ + + F +
Sbjct:  306 RPAVVLLVDSREGGG--RYHLLKEMCAALDRTGVTFRTEALALGDYGWKYRGQDGG-----------ESMLPVLVERKRLDDLSDSLVDGRFVSQCTRMMQSRDAFPSTQLHYIVEGTYSGFRVGTCCARGCISKHGQATESEIEAKLQELRDEKFTV 450
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1022.303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A182IYC0_9DIPT4.560e-828.11ERCC4 domain-containing protein n=1 Tax=Anopheles ... [more]
A0A182M6B1_9DIPT4.840e-838.95ERCC4 domain-containing protein n=1 Tax=Anopheles ... [more]
A0A182QZJ7_9DIPT6.040e-841.24ERCC4 domain-containing protein n=1 Tax=Anopheles ... [more]
A0A182I722_ANOAR6.080e-842.86ERCC4 domain-containing protein n=8 Tax=gambiae sp... [more]
F2UNC4_SALR56.390e-832.28ERCC4 domain-containing protein n=1 Tax=Salpingoec... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1022contigF-serratus_M_contig1022:137246..147113 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionERCC4 domain containing protein
Ec32 orthologEc-27_000090.1
Exons8
Model size3094
Cds size1548
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1022.303.1prot_F-serratus_M_contig1022.303.1Fucus serratus malepolypeptideF-serratus_M_contig1022 137766..141061 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928825.9797914-UTR-F-serratus_M_contig1022:137245..1377651622928825.9797914-UTR-F-serratus_M_contig1022:137245..137765Fucus serratus maleUTRF-serratus_M_contig1022 137246..137765 -
1690962589.983252-UTR-F-serratus_M_contig1022:137245..1377651690962589.983252-UTR-F-serratus_M_contig1022:137245..137765Fucus serratus maleUTRF-serratus_M_contig1022 137246..137765 -
1622928826.0549085-UTR-F-serratus_M_contig1022:141061..1412561622928826.0549085-UTR-F-serratus_M_contig1022:141061..141256Fucus serratus maleUTRF-serratus_M_contig1022 141062..141256 -
1690962590.0360668-UTR-F-serratus_M_contig1022:141061..1412561690962590.0360668-UTR-F-serratus_M_contig1022:141061..141256Fucus serratus maleUTRF-serratus_M_contig1022 141062..141256 -
1622928826.070363-UTR-F-serratus_M_contig1022:141856..1421741622928826.070363-UTR-F-serratus_M_contig1022:141856..142174Fucus serratus maleUTRF-serratus_M_contig1022 141857..142174 -
1690962590.0451627-UTR-F-serratus_M_contig1022:141856..1421741690962590.0451627-UTR-F-serratus_M_contig1022:141856..142174Fucus serratus maleUTRF-serratus_M_contig1022 141857..142174 -
1622928826.0845988-UTR-F-serratus_M_contig1022:142756..1429601622928826.0845988-UTR-F-serratus_M_contig1022:142756..142960Fucus serratus maleUTRF-serratus_M_contig1022 142757..142960 -
1690962590.0564623-UTR-F-serratus_M_contig1022:142756..1429601690962590.0564623-UTR-F-serratus_M_contig1022:142756..142960Fucus serratus maleUTRF-serratus_M_contig1022 142757..142960 -
1622928826.0991342-UTR-F-serratus_M_contig1022:144427..1445181622928826.0991342-UTR-F-serratus_M_contig1022:144427..144518Fucus serratus maleUTRF-serratus_M_contig1022 144428..144518 -
1690962590.072041-UTR-F-serratus_M_contig1022:144427..1445181690962590.072041-UTR-F-serratus_M_contig1022:144427..144518Fucus serratus maleUTRF-serratus_M_contig1022 144428..144518 -
1622928826.11113-UTR-F-serratus_M_contig1022:145407..1455111622928826.11113-UTR-F-serratus_M_contig1022:145407..145511Fucus serratus maleUTRF-serratus_M_contig1022 145408..145511 -
1690962590.0825024-UTR-F-serratus_M_contig1022:145407..1455111690962590.0825024-UTR-F-serratus_M_contig1022:145407..145511Fucus serratus maleUTRF-serratus_M_contig1022 145408..145511 -
1622928826.1247938-UTR-F-serratus_M_contig1022:146999..1471131622928826.1247938-UTR-F-serratus_M_contig1022:146999..147113Fucus serratus maleUTRF-serratus_M_contig1022 147000..147113 -
1690962590.09099-UTR-F-serratus_M_contig1022:146999..1471131690962590.09099-UTR-F-serratus_M_contig1022:146999..147113Fucus serratus maleUTRF-serratus_M_contig1022 147000..147113 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928825.9995756-CDS-F-serratus_M_contig1022:137765..1391181622928825.9995756-CDS-F-serratus_M_contig1022:137765..139118Fucus serratus maleCDSF-serratus_M_contig1022 137766..139118 -
1690962589.9971294-CDS-F-serratus_M_contig1022:137765..1391181690962589.9971294-CDS-F-serratus_M_contig1022:137765..139118Fucus serratus maleCDSF-serratus_M_contig1022 137766..139118 -
1622928826.0183537-CDS-F-serratus_M_contig1022:140044..1402281622928826.0183537-CDS-F-serratus_M_contig1022:140044..140228Fucus serratus maleCDSF-serratus_M_contig1022 140045..140228 -
1690962590.0107496-CDS-F-serratus_M_contig1022:140044..1402281690962590.0107496-CDS-F-serratus_M_contig1022:140044..140228Fucus serratus maleCDSF-serratus_M_contig1022 140045..140228 -
1622928826.034379-CDS-F-serratus_M_contig1022:141050..1410611622928826.034379-CDS-F-serratus_M_contig1022:141050..141061Fucus serratus maleCDSF-serratus_M_contig1022 141051..141061 -
1690962590.026513-CDS-F-serratus_M_contig1022:141050..1410611690962590.026513-CDS-F-serratus_M_contig1022:141050..141061Fucus serratus maleCDSF-serratus_M_contig1022 141051..141061 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1022.303.1

>prot_F-serratus_M_contig1022.303.1 ID=prot_F-serratus_M_contig1022.303.1|Name=mRNA_F-serratus_M_contig1022.303.1|organism=Fucus serratus male|type=polypeptide|length=516bp
MKDGRLARQKKAMLRARAQGAISDLEIHLEGATEDSCYRDEISRRGLTPA
DLDAVLEQSKMDGFKIVHHLHFADFSAHLADATIALQKEFDARTLPFESF
VSWRNFVRICRDQPLLGDRPPSGEATGESDGLRRRGRPPTGGRPPIPPPS
ALAGSGLRQRTLDGVLGITGRNGEDNIGLSTTNSVNGGSGGSWPGKAVVG
GAGLSGTESSTLLEKAIEPGDDECCIVEAVLGGDSTPSSVPGAGGAESGR
IDGAASSSSPRVPASHRRRVLLGKRGIGDGREKSQQPTLGCAGSQSCGGR
DNSSGIHSSKRQRPSDGEDGGKLQASSTKRKARSLAFCDVGDKDGSCEGH
GGSSVARGCGGSKQPSRTRIPGMIYPCSAAPKASSSEAGGSSCMRHLAAL
PRNEGGATSVSNVDARHNNSSWGEVVDLSEDSPQQVPPLRLRCRALDRHR
LGIRSGSLGRRRDWVLAAEALRTTVLCLTCVPQTTIFPCRGARCGVATPV
AGGTPGNILPEIAMD*
back to top

mRNA from alignment at F-serratus_M_contig1022:137246..147113-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1022.303.1 ID=mRNA_F-serratus_M_contig1022.303.1|Name=mRNA_F-serratus_M_contig1022.303.1|organism=Fucus serratus male|type=mRNA|length=9868bp|location=Sequence derived from alignment at F-serratus_M_contig1022:137246..147113- (Fucus serratus male)
GGGGAGGTCGAAAACTTCGCGTGGTGCTCCTTCGACCACCTTCGGATTAC
CGGAAAGTTTTGCTGCGTCAGAGAAAAGGACATCGATGAGAGGACTACCA
TCGCCAAGCTCGAGGTGCGTGCGAATCACGTTTTTTTTTTTTAAGTTTGT
TCATTGGGGGGGAGGGAGGCGGAGGGAATAGTTTCTTCGATCCGACGCAT
CTCGTGAAACCTTCTCCCGAAAAATCTGTTTCACGGGGGAAAAAGTGAGG
AAACTGCCCCCCACACCTGCTAAAATATTAAAAATATATTTGGTGTATAA
TATTTGTATAAAGAAGAGATAGTTGAAGGAAAAGTCAAGGCGCTGTTGCC
GCGAAAATATGTGACGTCATTAGCGTTATTCTCTTCGAGGAGGCTTGTAC
GTAGATGGTCTACAAAGGGCGCCAGTCGGGCCACGCGCGTGCGGCCCTGA
CGCGTCCTTGACTGCAAGGGACCCTGAACCGCTTCTTGGTATCAACTGCT
TGGCCAATCAGCAGTCCCGACTTCAGCTTGCGGAGGAGCACGTGTCACTC
GCGTCGAAAGAGCGAGCGCATCGAAAAATCGGCGTATCGTGAAGGTGTTT
GACGTGTTTAACCCCGTCGCCGCAGCCCGCGGTACATGGCATCGCATCGC
ATCGCATCGCATCGCATCGCATCATGAAGGGTAGCTATTAAATAGTTAGT
CTGCGCGCCTCACCAGTATATCGCTCTTGTAAAGTTTCACAGCTGATTGA
AAAGTGTTACACAACCTCCCGACAGTCTCTACTTTATTAAGGTGCGAAGT
GCTGCTTCAACTGATCACCGGGATAGTGAGAGGGGGGGGAGAAAAAATAA
AAAATACATCCGTGGGGGGTGGGAGCACCCTCTCTCTCGAGTAGCTACAC
GCCCACGAATACAGGGTTTGGAGAAAGATCTCGCCGTAAGCTTTGCCAGA
ACCTTCCGTCGATTTTGGGGGGGTCGTTGCTTTCTGCATTCAATACAAGA
CATACAGCTGAGGGCACTAGAGTGTGTTAATATTTATATTACATTTTTAT
AGACTGTATTCATATTAATACAGTAGTACATTTTTATAGACTTTATTAAG
TCGCGTCGCCCAAGAGGTCTACCAGTAGTAGATAACCTGCACACCTGCTA
GTGCGGAGGTGGCGAGTTCGATTCTTGGCTAAATTGGGATTTTAATTCTT
TCTTCCGTAGCGGAAAGCGTGAGAACGTGAGTAGGTAAAATTCAACCGTT
GGTGGACGAGTTGTAAGAGTGCTGAACTTGCATCGCGAAAAAAAATCGTT
AGGCGTGAACCGGGGAGAGATGGGAAGATCCTTAGTGACCACAGGCAGGA
TGGAATGAGGCCCATCGGCTATAAGTGGTATACCTTGTTTCCCGCGACAA
AAACCGATAGATCCGATGTGTCTTCGGCGGGTCGGGCTACAATTTGGACA
GTATTTTGGAGCAATAATAATACGATATTACTGTTGATAGTACCTTCTAC
TCGCATGGTTGTTTTGCACCAGTTAGTCTAATATGTAGTACAATGAAATA
CAATAGTGTTTAATGTATGCTGTGGAACGTGTGTGTGTGGGGGGGGGGGC
AGGAGCTCGGGCGACGTCCGGTGTGCTGCAGCCCCGACTGTGAAGCTCAC
GCGGTCAAATTCGTGGGAAACGCCACCGAGAACTCGAGGTTGGAAACCTT
CCTCAGGCAAGTCATTTTGGTTTTTACATGAATTTAGTTGGGTGTTTTCT
TCCTTCGGCGAGGTGGGGAGGGGCGGAGTTCCGGAGGGATTTGCGAATTC
CTTTGCCTACTGTATTTCGTTTCTTGAAGACGAAACTTAAACTCCGTACT
ACTGTAGTTCTCTCGTCGGGTTTTGCTGTGGTAGCGAGGCTTTTGCGGTA
TTGTTTTCACCTTTTGCCATGATCCAGCTCTGACTCCCGTTTCGACGGAA
TGTATAGCTATAGTATTAACACTATCAATATGACTACTACTGGTACGTTC
CTTCGGGAAGCGCACACGATTTGTATTTTAAACAGTATAAGTACCAGTAG
TATTATAGCGTAAGTACTAGTAGTATAATGTATCTGCCGAGCCTTATCGC
GGATCGTTTTGACTTGGCTTTACTCTATATACTACAGAGCCTTATCTTGG
CATGGTACGTTTTAACGCGAGGAAAAGGGAAAGTTCACCAAAAGCTGCTC
TCGCGATATTTATAAAACTCACGCAACACACGCACGTCCCAGCCGCCGCA
CACGGACTCGAGAAAATGACTTCTTCGCTCCATTCTCTCCAGCGGCCGCA
CACTGGTATCTCGCTCTTATGCATATGAATACATAACCCCAAACAATGAA
GAATAATTTTTGCTGGGTTTTTCTGGATTTTTTTTCTTCTTCTCCCTTCT
TCTTGTCTCTTGCCTTTTTTTTTCCTGTTCTTTTCAGGACTTCCCGTATC
CCGCCTCCCCCGACGCCTGTAAACATCACACGTGTTACACACTTCGCAGC
ACCTCTCTGTCGTGCGCCGTCTCTGAGCGATGAACTTCTTTTGTTTTTCT
TCTTTTCGTCACACACACACACACACAATCTCTCTCTCTCCTCAGAAGGG
TGTACTGCAAGGAGCACCAGACGGCCATCGCCACCGCAGGCGCGAAGAAG
CGCTCGAGGGGGAAACAAGCGGTGGCGGATAATCCGGTAAGCCTGTTTCT
CGGAGGGAACCTTCTTTGCTTGTATTGATAGTCACAGCTGTACAGGCTAC
AGTACCTCCTTTAGTACCTTTGGTACCTTTAGTACCTTTGGTGGTTTGCC
GCCGGCAAGTCTGGCCGATGGATTGATGAGGGGACACAAGACACACGCCC
ACACCCTGGCGTATGGTTAGACTTCAATAGAATATGTACAGTGTTATTAG
TGTGGGCGCGGCACCTGTTTCGTTCTCCCCGCCGTGAAGAAAAACACTGT
AAAAATGTATATAAACACATTTCACATCGTCCGTCGTTCCGTTACGTTGC
CTTCAATTGCCTGCAAATCATGTACGGTCACACGTATAGCAAGAGTATGG
ATCGACCGGGTAAGGTTGCCAATCCTGCACGTCGTCAGCCGAACAGGAAT
AATGAAAATGTCCCTGTCCGCGTTCGCGCCTGAGAATTTGGTCTCGCGAG
ACGGGTTCGGCAGTCCCGTCCCGCATCAGCCTGCTCATCTCCATACTCAG
GCTGAATATGAGACTTACTTACGAGATTCCTCCCGAATTCCGTAGCGGTG
TACATTTATTTATTTTAAACCGCCATCAGCCATCGGGTAAGTCCCGAGTT
TATCGGGTCACGCAATTACGTACGCACAGGGCCAGTAAACCTCAAGGTAG
TTCCGAACGAGTGCTGCCTTGGCAGGTAACCAAGGACTAATTAATATGCG
CCTCTCTTTCCCACACCCACTATTGTGTTATTGGTATAAAGTGGCCAGAA
TAGCTCTAAGCTTGAATTATCTGATACCAACTAGTAGGTAACCTGCATAC
ATGCTAGTGCGGAAATCGTGAGTTCGATTCTTAGCTTAAGCAGAATTTGT
GTTCATTCTTTCGTAACGGAAAGCGTGGGAACGTGAGTAAGTAAAATTCA
ACCATTGGTTGACGAGTTGTAAGAGTGCTGAACTTGCATCGCGATAAAAT
TGTAAGGCGCGAACCGGGGAGAGATGGGAAGATCCTTTGTGACCACAGAC
AGGATGGTAATTAGAGGTCCATCGGCTACAAATTATTGAGTATTGTTTCG
TACTGAAGTTGTACTGTACTCAAGTTTTACAAGAGTACTGAATGCGAAAT
CAACTGGACTGCACCGTGAGTAAGTAGTATGTTTTGTACTAGCAGTACGC
TATGTGTATCGGAAGATAAAAACGATCTCTTCTGTAGAGTATATGAACTA
TTATAGAAGAGCCTTATTACAAACGGTACTACAGTATTATGCTGTATTAT
ACTATACTATATTATACTATACTATACTATACTGTATTACCGTATGTATT
AGCTGTTTCTGACCAGGCTTCGAACCCGTCCCTTTTCCCTTTTTTGTTTC
TTGTTTAGTTTTGCCTATTTTCTTTCCTCTACACATTATATGCATAAACG
CATGCATAAAAAATAATAATCTGGGGGCGCGTGAAACCCGTTCCCTAACC
CAGTACGCGGCGGGGGTGAGGAAGGATTCCTCCCCTCCCCTAGAAGCTGT
CGTGTCCGGCAAGATCACGGTCTCTTGGTATCGGCGTATTCTAGGGGAAG
CGCTGCTTAAGCGTGAGCTTGATCGAGTGGAACGCCTCCGGGGGGTGGAC
GTTGCCGAGAGACTCACCACAGCCTGGCGCTCCGGGTTCAAGAACAAGGT
CACGCGGGTTAGTGAGGGCGCCGTCGGGCACTGCTGCTGATCTGAATGTT
ATCTGAATGTTATTATAGATTGTCTAGACTACACTACTGAGGTTGTCGTT
GTGCTTTTCCTTCTTCTTTTTCAAGTTTTTTTCGCGCCGTCTCGCTTCTC
TCATCGATATACACACGCCATAACAAAACAGTTTCAAGTTGATTTATGAA
TAGCTATTTTTAGACCCTAATAGCGTAAATAAATATACCTGGTATATTTT
TTGTCATGTACCTGGCACGAGATTAGCAGTACAGCAGTACCGTAGAAATA
TTAGCAGAGGCGCAAAGGTCCAAGTGCTCAAGGCAAAGCCAGGGTATCGG
TGTTGGTATTGGTACTACTGTATTGACCCCTCCAGGTGTAAAATACGCCA
TAGTACTTGTCATGACATTAGTTCTTGTAAACACTTTTTCACCCGCTTGT
CGAAGGAAGAGGAGGCGTCTGTTACCCCTGACATTTTTCATCAACAGGTA
CCCCGTCAGCTTACGCCCTAAAACGCCACCCCGGCCTCGCACAACGGGCC
TTTCCCCCCCCCCTCCCCTCTGTGGTCTTCTCCAATCAGGTGTACGCCCT
CACAACAATCGGAACCTGGGTGGCCGCAAAGATCGAAAAGGCGGCGATTA
TTGGCGGCGGCGTGCTTCGGCCATCCCCGTCGTCATCAGCCGCGGGATCG
CCGTCGGTCACCATCAGCCCCATCCTCAACCGCGCCTCCTACGCGAGCTT
CTCGGAAGGAGACGGGGGAGGAGGCGGCGGCGCGGCGGTCTCCTCTCACA
GCGGCCTCTCCCCGCTCGCTCCGACGAGGTCGAACGGCGCCGCGAGGCCC
CGCGTGAGGCTTTTGATCGACAGCCGGGAGAAAGGGGGAGCGTCCAGACG
GAGTAAGGTGCAAGATTAATAGGTTGCGTACCGTATTGCACAATTTCGGA
CAGTATCTGGAGTTATTTTTGGCAGTTTTTCTTTTTCTTTTTCTGTGAAA
CCGCTGAAACAAAAATGTGTTTGTGTTGCATCTTAAGTATACTAAGCATT
GACTGGAAGTGAAGCCTGCACCAGCTTATTGCTACGGTATCATATAAATT
ATATTAAAAAAAACGGGGGGGAGGAGGGAAGGTTCATGAATACGATTGAG
GCAATGATATTATGGTGTTGAAAGTGGTAAGTGACTGTTGATATTTTCTA
CTACCGTGGGAGGCATTATTGTCGATCGGGGTGTTCCGTCACCTTGTCGG
GCAGTACCATACCCTCTGGGGGGGGGGGCGAGATGTGCGCTGAGACGCTT
ACTTCCCACGACTCATTGTAAATGGTTTTCAGAGCGTTGCTACTCAGGCA
GTGAGTGGAGATGGAGCATTATATGCGGTCTTGGATGGTGTCCAGCTTTT
CAAACAGATGCACCGAGTGAAGCCTCGACTAGTGAGCCGCTCTCGGTCCC
CGTTGATCCTCTCTCTCCCCCCCCCCCTCACACACACAAACGCCTCCTCA
ACAAAAGCTTTCCGAGCTTACTAGCTACCTCAACAGCAGGGCCGTGGCGT
ACGAGGTTCGAGAGTGGAAATGCGGGGACTACGGCTGGGTCGTGCAGCCC
GACGCTGGTAAGCGTTTTTCTCCCGGCGACCTCGGGCATGAGAGGGAGTT
TGTGGTGCCTCGACTGCTGGAGAGGAAGCGGGTAGACGACCTCGCGGAGT
CCATGAAGGACGGGTGAGAGGGATCGGAGGTTATCGGTATCCGAGGGATC
AGAAGGCGAATGGATGGGAAGGCTCGGGGCAGTTGTTGTTTCTGGAGTAA
GCACGCGCCTGCTCGTGCACTATTGCTCAGTTTCGCAACTCGTGTTGCAT
GTTGTCCGCCTCAGTCCAGCTTATTGTTGTCGGAAATCATATCAACGACC
TGCTTAACTGTAAGACCAGCCCAGTCGGTTGACTGGTCAAAGGGGTTGAT
TGATTTCCTACTTCGAAGTTTTGTTTTGTTTTTCCCCGCTGCGGTCTAGA
GATATATTAATAGCTTATCAGGTATTTACATTACATGATACTTTAGCGTT
AGGCGTGCATAATATATAACGTAATATATATAAATATATATATATATATA
TATATACGAAGTATGTAAACACCCCTACGTCATATACCACTATTTCATAG
CGAGCGAGTGCGGCTGTTTATAAACCTCCGTGCTTGGGGAGGGGTTTTTT
TTCTTTTCTTTTTTATTTAGTCTAGGTGTATAGCAAAAAAGTTATGTGAG
TGCAGTACGCGTGTTTCATTTGACAGCGGTCAGAACCCCCCCCCCCATCG
CCCCCATCCCTCCCCTCTTAATTTTGTCATTATTTGACATGTTTCTATAT
AAAATAGTAGTCGTGATTTTGGAGGTTGGGCTGGTCGCTGTCAAGTCAAC
GCAGATTTTTACTGTACCCTTTTTTCCAGCAAAAGGCGAGAATCCAAGAT
TTTTTGTAAAAAACAACAACAAAACGCAGCGCTGTCCAACCACCCTCTCT
CTATTACTCTTACTAATACTATTACGACTGACCAGGAGGCTCGCTCGCCA
GAAAAAAGCGATGCTGAGAGCTCGCGCTCAAGGAGCGATTTCGGACCTGG
AGATTCACCTAGAGGGCGCCACGGAAGATTCGTGCTATCGAGACGAGATC
AGCCGGCGCGGGCTTACCCCGGCCGACCTCGACGCGGTCCTGGAGCAGTC
AAAGATGGATGGATTCAAGGTCTGTCCCCAACCACAAACCAAACTATTTT
GTTTCTAATGTGGCTCGCTCTTTTTCCCCCTTATCCCCCCCCGCCCCCAC
TATTGATATATTTTTTACTCCTAACAAATCTACATGAAAAAAAAACTGGG
ATGGGGTTTGCGGCGCGAAGCACAGCCAAGTACGTGTCGTGTCGGCACTA
CGACCGCTGCTGCCCTTGGTACTGGTATAAATAATATGTACAACCCTCCG
GAGTTCCTTCTTTATTACAGTATTATCATGTTTTTATCTTGGGGCTGGGA
AAAGATATAAAGTAGATTTGGCTGTATTTAAAAAAGTGTGCGCCGCGATG
CCTATTTTCTCACGCCTGAATGTGGGCCAACCACCTGCATCGTGATAACA
ACGACCTGCAGGTAATAGGCGAGAACCGGTGACTGACGAGTACGTTCGGA
AGGTGCAGCGTTTTTACCAAACCCCCCAGGGATTGACACCACCTATTCCC
TCCCCCCCACACACGCCTTAAAATTTCTCGACGACGCAACCAGACCAGCC
ACTGGACCAAGTAGCCCCTTTCCAAAATATTTTGGGCGAGATCTTGCAAG
ATCCGCAGTGTAACTGTCTGTTGGTGTCGAGTTTTAACGGCACCATACGT
TGCTGCGAAGGATACGATAACGAGCGCGGGTTTCCAGTCCCGTAAGGATG
TTTGATTTTCCAGAGGTAGGGTTAGTGGGCCTCGCAAACAGTGTTGGAAC
GTACCTGGCAAAAATTCAGACGGTGAAACGTGATGAAAAAACGAGTCGGG
ACAAAAACAAGATTTAAAGCAAACACACGCTCAGAGGGGCCGACGCACCC
ATCACGCAGCATCGTCATCACATCTTATCAGATCGCAATCGTCACCCTCA
TTCTTTTGCCCGTGGTCTTGGCGGGGCACGGCGGGACGGGAGCAGATTGT
ACACCATCTTCACTTTGCGGACTTCAGCGCCCATCTTGCCGACGCAACCA
TCGCCCTCCAGAAGGAGTTCGACGCGAGGACGCTTCCTTTCGAGTCCTTC
GTCAGTTGGCGGAACTTCGTCCGCATTTGCAGGGACCAGCCGCTGCTTGG
GGATCGACCTCCGTCGGGAGAGGCCACCGGCGAAAGCGATGGGCTTCGAC
GACGGGGCCGGCCTCCAACGGGCGGGCGGCCTCCCATTCCTCCCCCCTCG
GCTTTGGCGGGGTCAGGTTTGCGTCAACGTACTCTGGATGGCGTTTTGGG
AATCACAGGACGGAACGGGGAGGATAACATTGGCCTTAGTACTACCAATA
GCGTAAACGGCGGAAGCGGAGGGAGCTGGCCTGGGAAGGCAGTGGTAGGG
GGAGCTGGCTTGAGTGGTACGGAGAGTTCCACGCTGCTCGAAAAGGCGAT
AGAGCCGGGAGACGACGAGTGCTGCATCGTGGAAGCTGTTTTGGGGGGCG
ATTCCACTCCGTCGTCTGTACCTGGTGCCGGAGGTGCTGAGAGTGGACGT
ATTGATGGCGCAGCGTCATCGTCCTCGCCACGGGTGCCAGCCTCTCACCG
TAGGAGGGTGTTATTGGGCAAGCGGGGGATCGGGGACGGGCGGGAAAAGT
CCCAGCAGCCAACCCTCGGATGCGCCGGGAGCCAGAGCTGCGGCGGGCGT
GATAACTCTAGCGGCATCCATAGCTCCAAGCGGCAACGCCCTTCAGACGG
GGAGGACGGCGGTAAACTCCAAGCATCATCAACCAAACGGAAGGCGCGCT
CGCTTGCTTTCTGCGATGTTGGAGACAAAGACGGTAGCTGCGAGGGCCAT
GGTGGCAGCAGCGTCGCGAGGGGTTGCGGCGGTTCGAAGCAGCCATCACG
GACCAGGATTCCGGGGATGATTTATCCGTGCTCCGCAGCGCCCAAAGCGT
CATCGTCAGAGGCTGGTGGGAGCTCGTGCATGAGGCACCTGGCGGCGTTG
CCTCGAAATGAAGGAGGCGCTACGAGTGTGAGCAACGTTGATGCCAGACA
TAACAACAGCTCTTGGGGGGAGGTTGTGGATCTAAGCGAAGATAGCCCGC
AACAAGTGCCTCCTCTCAGGCTCCGATGCCGCGCCCTGGATCGGCATCGG
CTCGGCATCAGGAGCGGGAGTCTAGGTCGGAGGCGGGACTGGGTGCTTGC
GGCGGAGGCGCTGAGGACGACGGTGTTGTGCTTGACGTGTGTTCCTCAGA
CGACGATTTTTCCTTGTAGAGGTGCGAGGTGTGGTGTTGCGACACCGGTG
GCAGGCGGCACCCCAGGAAATATTTTACCCGAGATCGCTATGGACTAGGT
TTGCTGTGAGTCATGAAAAAGCGAGCGCTCGTAACCGTCGGTATCTCGAC
GAGGTGCCACCTTGTAGGTATCGCCCTCGCCGATATCATCTTCAAGATTG
ATTTTGTTTGTTGAATGAGTCCGTTGGTTTTGTGTATAGACTGCTTGTAC
GCCCCCCCCGAGACTGTGGAGCGCATTCTCGGCACACTCATGGCGCCCCA
ATTTGCCTCACTATAACAACAGCAGTACTAGTATCTATGGCCAGCCACAC
GGTAGTATTAATAGCTCTACTCTAGTTTGAAGTTTTTTGGGGGCACAAAA
CTACTACTTTTTCTTTTTTTGCCTAAAGGAATGTAACCCTTCACGATAGA
GCTACTACCAACACGAACTGATAAGAACCGATCATCTCGTGAGTTTTCGA
GTGACGGGTATCGTTCGATCTCCGAGGGCGCGCACGTGTGCAACGGCGAA
CGCTGTCCATGTTCTCGTTTCTTGATGGCCCAGGATAAGGGACATGATAC
ATGTACGGTGAATCATAT
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1022:137246..147113-

>mRNA_F-serratus_M_contig1022.303.1 ID=mRNA_F-serratus_M_contig1022.303.1|Name=mRNA_F-serratus_M_contig1022.303.1|organism=Fucus serratus male|type=CDS|length=3096bp|location=Sequence derived from alignment at F-serratus_M_contig1022:137246..147113- (Fucus serratus male)
ATGAAGGACGGATGAAGGACGGGAGGCTCGCTCGCCAGAAAAAAGCGATG
CTGAGAGCTCGCGCTCAAGGAGCGATTTCGGACCTGGAGATTCACCTAGA
GGGCGCCACGGAAGATTCGTGCTATCGAGACGAGATCAGCCGGCGCGGGC
TTACCCCGGCCGACCTCGACGCGGTCCTGGAGCAGTCAAAGATGGATGGA
TTCAAGGAGGCTCGCTCGCCAGAAAAAAGCGATGCTGAGAGCTCGCGCTC
AAGGAGCGATTTCGGACCTGGAGATTCACCTAGAGGGCGCCACGGAAGAT
TCGTGCTATCGAGACGAGATCAGCCGGCGCGGGCTTACCCCGGCCGACCT
CGACGCGGTCCTGGAGCAGTCAAAGATGGATGGATTCAAGATTGTACACC
ATCTTCACTTTGCGGACTTCAGCGCCCATCTTGCCGACGCAACCATCGCC
CTCCAGAAGGAGTTCGACGCGAGGACGCTTCCTTTCGAGTCCTTCGTCAG
TTGGCGGAACTTCGTCCGCATTTGCAGGGACCAGCCGCTGCTTGGGGATC
GACCTCCGTCGGGAGAGGCCACCGGCGAAAGCGATGGGCTTCGACGACGG
GGCCGGCCTCCAACGGGCGGGCGGCCTCCCATTCCTCCCCCCTCGGCTTT
GGCGGGGTCAGGTTTGCGTCAACGTACTCTGGATGGCGTTTTGGGAATCA
CAGGACGGAACGGGGAGGATAACATTGGCCTTAGTACTACCAATAGCGTA
AACGGCGGAAGCGGAGGGAGCTGGCCTGGGAAGGCAGTGGTAGGGGGAGC
TGGCTTGAGTGGTACGGAGAGTTCCACGCTGCTCGAAAAGGCGATAGAGC
CGGGAGACGACGAGTGCTGCATCGTGGAAGCTGTTTTGGGGGGCGATTCC
ACTCCGTCGTCTGTACCTGGTGCCGGAGGTGCTGAGAGTGGACGTATTGA
TGGCGCAGCGTCATCGTCCTCGCCACGGGTGCCAGCCTCTCACCGTAGGA
GGGTGTTATTGGGCAAGCGGGGGATCGGGGACGGGCGGGAAAAGTCCCAG
CAGCCAACCCTCGGATGCGCCGGGAGCCAGAGCTGCGGCGGGCGTGATAA
CTCTAGCGGCATCCATAGCTCCAAGCGGCAACGCCCTTCAGACGGGGAGG
ACGGCGGTAAACTCCAAGCATCATCAACCAAACGGAAGGCGCGCTCGCTT
GCTTTCTGCGATGTTGGAGACAAAGACGGTAGCTGCGAGGGCCATGGTGG
CAGCAGCGTCGCGAGGGGTTGCGGCGGTTCGAAGCAGCCATCACGGACCA
GGATTCCGGGGATGATTTATCCGTGCTCCGCAGCGCCCAAAGCGTCATCG
TCAGAGGCTGGTGGGAGCTCGTGCATGAGGCACCTGGCGGCGTTGCCTCG
AAATGAAGGAGGCGCTACGAGTGTGAGCAACGTTGATGCCAGACATAACA
ACAGCTCTTGGGGGGAGGTTGTGGATCTAAGCGAAGATAGCCCGCAACAA
GTGCCTCCTCTCAGGCTCCGATGCCGCGCCCTGGATCGGCATCGGCTCGG
CATCAGGAGCGGGAGTCTAGGTCGGAGGCGGGACTGGGTGCTTGCGGCGG
AGGCGCTGAGGACGACGGTGTTGTGCTTGACGTGTGTTCCTCAGACGACG
ATTTTTCCTTGTAGAGGTGCGAGGTGTGGTGTTGCGACACCGGTGGCAGG
CGGCACCCCAGGAAATATTTTACCCGAGATCGCTATGGACTAGATTGTAC
ACCATCTTCACTTTGCGGACTTCAGCGCCCATCTTGCCGACGCAACCATC
GCCCTCCAGAAGGAGTTCGACGCGAGGACGCTTCCTTTCGAGTCCTTCGT
CAGTTGGCGGAACTTCGTCCGCATTTGCAGGGACCAGCCGCTGCTTGGGG
ATCGACCTCCGTCGGGAGAGGCCACCGGCGAAAGCGATGGGCTTCGACGA
CGGGGCCGGCCTCCAACGGGCGGGCGGCCTCCCATTCCTCCCCCCTCGGC
TTTGGCGGGGTCAGGTTTGCGTCAACGTACTCTGGATGGCGTTTTGGGAA
TCACAGGACGGAACGGGGAGGATAACATTGGCCTTAGTACTACCAATAGC
GTAAACGGCGGAAGCGGAGGGAGCTGGCCTGGGAAGGCAGTGGTAGGGGG
AGCTGGCTTGAGTGGTACGGAGAGTTCCACGCTGCTCGAAAAGGCGATAG
AGCCGGGAGACGACGAGTGCTGCATCGTGGAAGCTGTTTTGGGGGGCGAT
TCCACTCCGTCGTCTGTACCTGGTGCCGGAGGTGCTGAGAGTGGACGTAT
TGATGGCGCAGCGTCATCGTCCTCGCCACGGGTGCCAGCCTCTCACCGTA
GGAGGGTGTTATTGGGCAAGCGGGGGATCGGGGACGGGCGGGAAAAGTCC
CAGCAGCCAACCCTCGGATGCGCCGGGAGCCAGAGCTGCGGCGGGCGTGA
TAACTCTAGCGGCATCCATAGCTCCAAGCGGCAACGCCCTTCAGACGGGG
AGGACGGCGGTAAACTCCAAGCATCATCAACCAAACGGAAGGCGCGCTCG
CTTGCTTTCTGCGATGTTGGAGACAAAGACGGTAGCTGCGAGGGCCATGG
TGGCAGCAGCGTCGCGAGGGGTTGCGGCGGTTCGAAGCAGCCATCACGGA
CCAGGATTCCGGGGATGATTTATCCGTGCTCCGCAGCGCCCAAAGCGTCA
TCGTCAGAGGCTGGTGGGAGCTCGTGCATGAGGCACCTGGCGGCGTTGCC
TCGAAATGAAGGAGGCGCTACGAGTGTGAGCAACGTTGATGCCAGACATA
ACAACAGCTCTTGGGGGGAGGTTGTGGATCTAAGCGAAGATAGCCCGCAA
CAAGTGCCTCCTCTCAGGCTCCGATGCCGCGCCCTGGATCGGCATCGGCT
CGGCATCAGGAGCGGGAGTCTAGGTCGGAGGCGGGACTGGGTGCTTGCGG
CGGAGGCGCTGAGGACGACGGTGTTGTGCTTGACGTGTGTTCCTCAGACG
ACGATTTTTCCTTGTAGAGGTGCGAGGTGTGGTGTTGCGACACCGGTGGC
AGGCGGCACCCCAGGAAATATTTTACCCGAGATCGCTATGGACTAG
back to top