mRNA_F-serratus_M_contig1020.283.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1020.283.1
Unique NamemRNA_F-serratus_M_contig1020.283.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1020.283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1020contigF-serratus_M_contig1020:99009..101356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2044
Cds size1860
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1020.283.1prot_F-serratus_M_contig1020.283.1Fucus serratus malepolypeptideF-serratus_M_contig1020 99142..101305 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928823.060824-UTR-F-serratus_M_contig1020:99008..991411622928823.060824-UTR-F-serratus_M_contig1020:99008..99141Fucus serratus maleUTRF-serratus_M_contig1020 99009..99141 -
1690962588.6988466-UTR-F-serratus_M_contig1020:99008..991411690962588.6988466-UTR-F-serratus_M_contig1020:99008..99141Fucus serratus maleUTRF-serratus_M_contig1020 99009..99141 -
1622928823.1069841-UTR-F-serratus_M_contig1020:101305..1013561622928823.1069841-UTR-F-serratus_M_contig1020:101305..101356Fucus serratus maleUTRF-serratus_M_contig1020 101306..101356 -
1690962588.7316723-UTR-F-serratus_M_contig1020:101305..1013561690962588.7316723-UTR-F-serratus_M_contig1020:101305..101356Fucus serratus maleUTRF-serratus_M_contig1020 101306..101356 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928823.0736494-CDS-F-serratus_M_contig1020:99141..1008281622928823.0736494-CDS-F-serratus_M_contig1020:99141..100828Fucus serratus maleCDSF-serratus_M_contig1020 99142..100828 -
1690962588.7088096-CDS-F-serratus_M_contig1020:99141..1008281690962588.7088096-CDS-F-serratus_M_contig1020:99141..100828Fucus serratus maleCDSF-serratus_M_contig1020 99142..100828 -
1622928823.0899518-CDS-F-serratus_M_contig1020:101132..1013051622928823.0899518-CDS-F-serratus_M_contig1020:101132..101305Fucus serratus maleCDSF-serratus_M_contig1020 101133..101305 -
1690962588.716818-CDS-F-serratus_M_contig1020:101132..1013051690962588.716818-CDS-F-serratus_M_contig1020:101132..101305Fucus serratus maleCDSF-serratus_M_contig1020 101133..101305 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1020.283.1

>prot_F-serratus_M_contig1020.283.1 ID=prot_F-serratus_M_contig1020.283.1|Name=mRNA_F-serratus_M_contig1020.283.1|organism=Fucus serratus male|type=polypeptide|length=620bp
MFRTERPKSFEPATPWKIQFKRSTTYRTHSRLLKQKHTVRDQNALLVLVS
RAFTRPWRKVREIYLGVHKNIRCTREGDEEDILTIPSRRPNTYKFFSRAS
LPVKKMQGLAQIQPPSSCQKLEVHAQTKRGSVLLSGSPGDGIRRKQRPST
AAHGSAAPLESATVESVKKTWQDEGHGSAKHATKEGASFDENKKTWAFRN
WYFSTVLPSQLIPREIAVQADEPGQSTALALALPAAPSCHRVEVARPCTA
PVTKPPGRRRDRPDNDSGCRTSRGGHQRRWFSAPFMPPKRLTIISAPSFK
KAESAYEYSTFEPASEGISGNSGHHHFGGACGDVYNAALVLPRGQQHRGN
ECGTCKRDGVGSGRKTTVQTVSAFCRTLGRPPSSDRCCPSPKSNINGLVY
SGGGGENSTDGRSKSKRRMMESAKSTTTVKRVLCLSDGFGALAPRASREH
PDHTPRDHAVSERVKKSLRGKNKSLGDDAIQGWKSKGGKPSESTDSKRGD
QRAFTKKLLMKRWHPSGGKEVLGLGSTPCAGFCGESCGGVSSNGEASGKI
RNTSSALTEESGTSWKQQGQRPGDTYEPDPKNKTFQNRSRRDTGAQSING
TVAEVRWDGVHQVRTTMDV*
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mRNA from alignment at F-serratus_M_contig1020:99009..101356-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1020.283.1 ID=mRNA_F-serratus_M_contig1020.283.1|Name=mRNA_F-serratus_M_contig1020.283.1|organism=Fucus serratus male|type=mRNA|length=2348bp|location=Sequence derived from alignment at F-serratus_M_contig1020:99009..101356- (Fucus serratus male)
CTGGAAACTACCGCCCGCTCCGTAATCCTAAAAAAAAACAGCGGCGACTA
CATGTTTAGGACCGAACGCCCCAAGAGCTTTGAACCAGCCACCCCGTGGA
AAATTCAATTCAAACGTTCCACGACGTACCGAACGCACAGCCGACTCCTG
AAGCAGAAGCATACCGTGCGAGATCAGAATGCGCTGCTCGTGCTCGTATC
ACGAGCTTTCACCAGGCCTTGGAGGTGTGGGACGCTTCGCTCTGAATAGC
GATCTGGCAAATAAATGGCCTGTATAGCGAGCTATTCGTACAAGTAGGAA
CTTTTGAATAAAATACGACAAGACATTCACATATCTGAAAAAAAGCAACC
AAACTCCTCTGATTTGGAAGATACTACCAGTACAAACATGAGCACACCGT
ACGTTCTGATGCGGTGTACCCCGTGGTACTCGAATGGGTGGATCCTCCAC
GCATAAATGTTAAATCTACGGCCAAGGGTTGGTGCACTTGGTACAAAACA
TCACCCAATCCGCGAATGTTCCGTCTAGGAAAGTTCGAGAAATATATCTT
GGCGTCCATAAGAACATCCGATGCACAAGGGAAGGAGACGAGGAAGATAT
ACTTACGATTCCGTCGCGGCGACCAAACACTTATAAATTTTTTTCTAGGG
CATCCCTCCCTGTAAAGAAGATGCAGGGGCTCGCGCAGATACAACCGCCG
TCTTCGTGCCAGAAGCTAGAGGTCCACGCTCAAACAAAGCGAGGCTCGGT
CTTGCTCTCTGGTAGCCCTGGCGATGGTATACGTCGAAAGCAACGTCCCT
CGACAGCTGCGCATGGTTCTGCAGCTCCGCTCGAGTCTGCCACAGTGGAG
TCAGTAAAAAAAACATGGCAGGACGAGGGTCACGGTAGCGCGAAGCACGC
CACCAAGGAGGGGGCTTCCTTCGATGAAAATAAGAAAACTTGGGCATTTC
GGAACTGGTATTTTTCCACAGTGCTTCCCTCTCAACTTATTCCTCGCGAG
ATTGCCGTTCAGGCGGATGAACCAGGACAAAGCACTGCCCTTGCTCTCGC
GCTTCCTGCGGCTCCTTCTTGCCACCGAGTCGAGGTCGCCAGACCGTGCA
CTGCTCCTGTCACGAAACCACCAGGTCGCCGTCGAGACCGCCCGGACAAT
GACAGTGGTTGCCGCACGTCCCGAGGAGGACATCAACGGAGATGGTTCTC
GGCCCCGTTCATGCCCCCAAAACGTCTGACTATAATATCTGCACCATCCT
TCAAGAAAGCAGAATCAGCATACGAGTACAGCACCTTTGAACCAGCATCC
GAAGGCATAAGTGGCAATTCGGGTCACCATCACTTCGGCGGTGCCTGCGG
TGACGTTTACAACGCCGCTTTGGTGTTGCCGAGAGGCCAGCAACACCGAG
GGAACGAGTGCGGCACATGCAAGAGAGATGGCGTGGGTTCGGGTCGGAAG
ACTACAGTGCAAACTGTCTCCGCCTTTTGTAGGACGCTGGGACGACCACC
GTCATCGGATCGTTGTTGTCCTAGTCCGAAGAGTAACATCAACGGTCTCG
TGTATAGTGGAGGTGGAGGTGAAAACTCGACCGACGGGCGCAGCAAGAGC
AAGCGTCGGATGATGGAAAGCGCGAAATCAACGACAACCGTAAAAAGGGT
ACTCTGTCTGTCCGACGGATTTGGTGCACTGGCGCCACGTGCAAGTCGAG
AGCACCCCGACCACACACCGAGGGATCACGCGGTGTCAGAACGCGTTAAG
AAGTCGTTGCGGGGCAAAAACAAGTCATTGGGTGATGATGCCATACAGGG
TTGGAAGAGCAAAGGCGGCAAGCCGTCTGAATCGACCGACTCAAAGCGCG
GTGACCAACGTGCATTTACTAAGAAGCTTCTGATGAAGCGATGGCACCCT
TCGGGCGGTAAAGAAGTTCTAGGCCTAGGTTCGACTCCCTGTGCCGGATT
TTGCGGCGAATCCTGCGGCGGCGTTAGTTCAAACGGCGAAGCCTCCGGAA
AGATTCGTAATACTTCGTCTGCGTTGACAGAGGAGAGTGGTACGTCTTGG
AAGCAGCAGGGGCAGAGACCGGGGGATACCTATGAGCCTGATCCTAAAAA
CAAAACGTTCCAGAATCGTAGCAGGCGGGACACCGGAGCGCAATCTATTA
ATGGTACGGTCGCGGAAGTGAGATGGGATGGCGTACATCAGGTACGGACG
ACGATGGACGTATGAAAACTAGAAGCCGTTTGGCTAACTAGCGGGGCAGT
GGTCACGGCTGTGACGGTGGCCAGAGGCCTCACCCCAAAGCTGTTGTCGA
CCGCAACACACCACTCTAGCTCACTGCAATGAGCACAAACATGTCGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1020:99009..101356-

>mRNA_F-serratus_M_contig1020.283.1 ID=mRNA_F-serratus_M_contig1020.283.1|Name=mRNA_F-serratus_M_contig1020.283.1|organism=Fucus serratus male|type=CDS|length=3720bp|location=Sequence derived from alignment at F-serratus_M_contig1020:99009..101356- (Fucus serratus male)
ATGTTTAGGACCGAACGCCCCAAGAGCTTTGAACCAGCCACCCCGTGGAA
AATTCAATTCAAACGTTCCACGACGTACCGAACGCACAGCCGACTCCTGA
AGCAGAAGCATACCGTGCGAGATCAGAATGCGCTGCTCGTGCTCGTATCA
CGAGCTTTCACCAGGCCTTGGAGATGTTTAGGACCGAACGCCCCAAGAGC
TTTGAACCAGCCACCCCGTGGAAAATTCAATTCAAACGTTCCACGACGTA
CCGAACGCACAGCCGACTCCTGAAGCAGAAGCATACCGTGCGAGATCAGA
ATGCGCTGCTCGTGCTCGTATCACGAGCTTTCACCAGGCCTTGGAGGAAA
GTTCGAGAAATATATCTTGGCGTCCATAAGAACATCCGATGCACAAGGGA
AGGAGACGAGGAAGATATACTTACGATTCCGTCGCGGCGACCAAACACTT
ATAAATTTTTTTCTAGGGCATCCCTCCCTGTAAAGAAGATGCAGGGGCTC
GCGCAGATACAACCGCCGTCTTCGTGCCAGAAGCTAGAGGTCCACGCTCA
AACAAAGCGAGGCTCGGTCTTGCTCTCTGGTAGCCCTGGCGATGGTATAC
GTCGAAAGCAACGTCCCTCGACAGCTGCGCATGGTTCTGCAGCTCCGCTC
GAGTCTGCCACAGTGGAGTCAGTAAAAAAAACATGGCAGGACGAGGGTCA
CGGTAGCGCGAAGCACGCCACCAAGGAGGGGGCTTCCTTCGATGAAAATA
AGAAAACTTGGGCATTTCGGAACTGGTATTTTTCCACAGTGCTTCCCTCT
CAACTTATTCCTCGCGAGATTGCCGTTCAGGCGGATGAACCAGGACAAAG
CACTGCCCTTGCTCTCGCGCTTCCTGCGGCTCCTTCTTGCCACCGAGTCG
AGGTCGCCAGACCGTGCACTGCTCCTGTCACGAAACCACCAGGTCGCCGT
CGAGACCGCCCGGACAATGACAGTGGTTGCCGCACGTCCCGAGGAGGACA
TCAACGGAGATGGTTCTCGGCCCCGTTCATGCCCCCAAAACGTCTGACTA
TAATATCTGCACCATCCTTCAAGAAAGCAGAATCAGCATACGAGTACAGC
ACCTTTGAACCAGCATCCGAAGGCATAAGTGGCAATTCGGGTCACCATCA
CTTCGGCGGTGCCTGCGGTGACGTTTACAACGCCGCTTTGGTGTTGCCGA
GAGGCCAGCAACACCGAGGGAACGAGTGCGGCACATGCAAGAGAGATGGC
GTGGGTTCGGGTCGGAAGACTACAGTGCAAACTGTCTCCGCCTTTTGTAG
GACGCTGGGACGACCACCGTCATCGGATCGTTGTTGTCCTAGTCCGAAGA
GTAACATCAACGGTCTCGTGTATAGTGGAGGTGGAGGTGAAAACTCGACC
GACGGGCGCAGCAAGAGCAAGCGTCGGATGATGGAAAGCGCGAAATCAAC
GACAACCGTAAAAAGGGTACTCTGTCTGTCCGACGGATTTGGTGCACTGG
CGCCACGTGCAAGTCGAGAGCACCCCGACCACACACCGAGGGATCACGCG
GTGTCAGAACGCGTTAAGAAGTCGTTGCGGGGCAAAAACAAGTCATTGGG
TGATGATGCCATACAGGGTTGGAAGAGCAAAGGCGGCAAGCCGTCTGAAT
CGACCGACTCAAAGCGCGGTGACCAACGTGCATTTACTAAGAAGCTTCTG
ATGAAGCGATGGCACCCTTCGGGCGGTAAAGAAGTTCTAGGCCTAGGTTC
GACTCCCTGTGCCGGATTTTGCGGCGAATCCTGCGGCGGCGTTAGTTCAA
ACGGCGAAGCCTCCGGAAAGATTCGTAATACTTCGTCTGCGTTGACAGAG
GAGAGTGGTACGTCTTGGAAGCAGCAGGGGCAGAGACCGGGGGATACCTA
TGAGCCTGATCCTAAAAACAAAACGTTCCAGAATCGTAGCAGGCGGGACA
CCGGAGCGCAATCTATTAATGGTACGGTCGCGGAAGTGAGATGGGATGGC
GTACATCAGGTACGGACGACGATGGACGTATGAGAAAGTTCGAGAAATAT
ATCTTGGCGTCCATAAGAACATCCGATGCACAAGGGAAGGAGACGAGGAA
GATATACTTACGATTCCGTCGCGGCGACCAAACACTTATAAATTTTTTTC
TAGGGCATCCCTCCCTGTAAAGAAGATGCAGGGGCTCGCGCAGATACAAC
CGCCGTCTTCGTGCCAGAAGCTAGAGGTCCACGCTCAAACAAAGCGAGGC
TCGGTCTTGCTCTCTGGTAGCCCTGGCGATGGTATACGTCGAAAGCAACG
TCCCTCGACAGCTGCGCATGGTTCTGCAGCTCCGCTCGAGTCTGCCACAG
TGGAGTCAGTAAAAAAAACATGGCAGGACGAGGGTCACGGTAGCGCGAAG
CACGCCACCAAGGAGGGGGCTTCCTTCGATGAAAATAAGAAAACTTGGGC
ATTTCGGAACTGGTATTTTTCCACAGTGCTTCCCTCTCAACTTATTCCTC
GCGAGATTGCCGTTCAGGCGGATGAACCAGGACAAAGCACTGCCCTTGCT
CTCGCGCTTCCTGCGGCTCCTTCTTGCCACCGAGTCGAGGTCGCCAGACC
GTGCACTGCTCCTGTCACGAAACCACCAGGTCGCCGTCGAGACCGCCCGG
ACAATGACAGTGGTTGCCGCACGTCCCGAGGAGGACATCAACGGAGATGG
TTCTCGGCCCCGTTCATGCCCCCAAAACGTCTGACTATAATATCTGCACC
ATCCTTCAAGAAAGCAGAATCAGCATACGAGTACAGCACCTTTGAACCAG
CATCCGAAGGCATAAGTGGCAATTCGGGTCACCATCACTTCGGCGGTGCC
TGCGGTGACGTTTACAACGCCGCTTTGGTGTTGCCGAGAGGCCAGCAACA
CCGAGGGAACGAGTGCGGCACATGCAAGAGAGATGGCGTGGGTTCGGGTC
GGAAGACTACAGTGCAAACTGTCTCCGCCTTTTGTAGGACGCTGGGACGA
CCACCGTCATCGGATCGTTGTTGTCCTAGTCCGAAGAGTAACATCAACGG
TCTCGTGTATAGTGGAGGTGGAGGTGAAAACTCGACCGACGGGCGCAGCA
AGAGCAAGCGTCGGATGATGGAAAGCGCGAAATCAACGACAACCGTAAAA
AGGGTACTCTGTCTGTCCGACGGATTTGGTGCACTGGCGCCACGTGCAAG
TCGAGAGCACCCCGACCACACACCGAGGGATCACGCGGTGTCAGAACGCG
TTAAGAAGTCGTTGCGGGGCAAAAACAAGTCATTGGGTGATGATGCCATA
CAGGGTTGGAAGAGCAAAGGCGGCAAGCCGTCTGAATCGACCGACTCAAA
GCGCGGTGACCAACGTGCATTTACTAAGAAGCTTCTGATGAAGCGATGGC
ACCCTTCGGGCGGTAAAGAAGTTCTAGGCCTAGGTTCGACTCCCTGTGCC
GGATTTTGCGGCGAATCCTGCGGCGGCGTTAGTTCAAACGGCGAAGCCTC
CGGAAAGATTCGTAATACTTCGTCTGCGTTGACAGAGGAGAGTGGTACGT
CTTGGAAGCAGCAGGGGCAGAGACCGGGGGATACCTATGAGCCTGATCCT
AAAAACAAAACGTTCCAGAATCGTAGCAGGCGGGACACCGGAGCGCAATC
TATTAATGGTACGGTCGCGGAAGTGAGATGGGATGGCGTACATCAGGTAC
GGACGACGATGGACGTATGA
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