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Homology
BLAST of mRNA_F-serratus_M_contig1020.278.1 vs. uniprot
Match: D7FTC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC3_ECTSI) HSP 1 Score: 151 bits (381), Expect = 5.280e-39 Identity = 69/145 (47.59%), Postives = 89/145 (61.38%), Query Frame = 2
Query: 89 EKTEDPPPPGEMSRTFATHVLREIDVMEHGAMIANIRDGVGELVFRITMAYAWKVEGRIADSFKNLMRCGEIIVQHPGLCRFIPWRHLMHCILNILAKDGNCAKYSELRGIYNSMMDQPGTPKVPPFEEWSGMEDICNGVFCRSI 523
+++ +PPPPGEMS FA +L E D+M H ++ GVGEL F MAYA ++GR + + L RC +I + PG+CR W HL HC L L G KY LR YNS+MD+P +VPP EEW+GME IC VFCRS+
Sbjct: 306 DQSTEPPPPGEMSLKFAAELLPECDLMVHATQTPEVKGGVGELYFHSIMAYANVLQGRQSWAMDGLWRCADIFLTSPGICRLTAWTHLAHCTLACLLLSGRHEKYESLRQAYNSVMDEPSAVRVPPAEEWTGMECICKHVFCRSL 450
BLAST of mRNA_F-serratus_M_contig1020.278.1 vs. uniprot
Match: A0A6H5K678_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K678_9PHAE) HSP 1 Score: 79.0 bits (193), Expect = 2.270e-13 Identity = 39/113 (34.51%), Postives = 62/113 (54.87%), Query Frame = 2
Query: 188 ANIRDGVGELVFRITMAYAWKVEGRIADSFKNLMRCGEIIVQHPGLCRFIPWRHLMHCILNILAKDGNCAKYSELRGIYNSMMDQPGTPKVPPFEEWSGMEDICNGVFCRSIA 526
A ++ G+G L++ + + ++ IA S + R ++++PGLCR+ H +H L LA +Y LR YN M +P PPFEEW+GM DIC+ +CR++A
Sbjct: 552 AKMQSGLGSLLYYGNLCFLQALDNEIAASVGSFHRSVSALLRYPGLCRYNSLSHNVHTQLWGLANARRREQYEALRAAYNPMRPARLSP-APPFEEWTGMSDICDHPYCRNVA 663
BLAST of mRNA_F-serratus_M_contig1020.278.1 vs. uniprot
Match: D8LSE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSE2_ECTSI) HSP 1 Score: 66.2 bits (160), Expect = 4.830e-9 Identity = 34/88 (38.64%), Postives = 47/88 (53.41%), Query Frame = 2
Query: 263 IADSFKNLMRCGEIIVQHPGLCRFIPWRHLMHCILNILAKDGNCAKYSELRGIYNSMMDQPGTPKVPPFEEWSGMEDICNGVFCRSIA 526
IA S + R ++++PGLCR+ H H L LA Y LR YN M +P PPF+EW+GM DIC+ +CR++A
Sbjct: 501 IAASAGSFHRSVSALLRYPGLCRYNSLSHNAHTQLWGLANARRREHYEALRAAYNPMRPASLSP-APPFDEWTGMSDICDHPYCRNVA 587
BLAST of mRNA_F-serratus_M_contig1020.278.1 vs. uniprot
Match: A0A6H5K5S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5S2_9PHAE) HSP 1 Score: 63.2 bits (152), Expect = 3.940e-8 Identity = 37/122 (30.33%), Postives = 60/122 (49.18%), Query Frame = 2
Query: 182 MIANIRDGVGELVFRI-TMAYAWKVEGRIADSFKNLMRCGEIIVQHPGLCRFIPWRHLMHCILNILAKDGNCAKYSELRGIYNSMMDQPGTPKVPPFEEWSGMEDICNGVFCRSIASARNSE 544
++ ++ GV E V +++ + A S ++ R ++++PGLCR+ P H H L LA +Y LR YN M +P PPFEE +G+ DIC+ +C +A+ E
Sbjct: 27 VLIHLHRGVIERVLSSRNLSFLQALNNEPAASGESFHRSVSALLRYPGLCRYNPRSHSAHTQLWALANARRREQYEALRAAYNPMRPARLSP-APPFEECTGVSDICDHPYCMYVAAGARCE 147
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 4 |
Model size | 669 |
Cds size | 645 |
Stop | 0 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928823.15268-UTR-F-serratus_M_contig1020:23492..23514 | 1622928823.15268-UTR-F-serratus_M_contig1020:23492..23514 | Fucus serratus male | UTR | F-serratus_M_contig1020 23493..23514 + |
1690962588.7450967-UTR-F-serratus_M_contig1020:23492..23514 | 1690962588.7450967-UTR-F-serratus_M_contig1020:23492..23514 | Fucus serratus male | UTR | F-serratus_M_contig1020 23493..23514 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928823.166117-CDS-F-serratus_M_contig1020:23514..23678 | 1622928823.166117-CDS-F-serratus_M_contig1020:23514..23678 | Fucus serratus male | CDS | F-serratus_M_contig1020 23515..23678 + |
1690962588.7542434-CDS-F-serratus_M_contig1020:23514..23678 | 1690962588.7542434-CDS-F-serratus_M_contig1020:23514..23678 | Fucus serratus male | CDS | F-serratus_M_contig1020 23515..23678 + |
1622928823.187402-CDS-F-serratus_M_contig1020:24046..24202 | 1622928823.187402-CDS-F-serratus_M_contig1020:24046..24202 | Fucus serratus male | CDS | F-serratus_M_contig1020 24047..24202 + |
1690962588.7621312-CDS-F-serratus_M_contig1020:24046..24202 | 1690962588.7621312-CDS-F-serratus_M_contig1020:24046..24202 | Fucus serratus male | CDS | F-serratus_M_contig1020 24047..24202 + |
1622928823.206002-CDS-F-serratus_M_contig1020:25159..25333 | 1622928823.206002-CDS-F-serratus_M_contig1020:25159..25333 | Fucus serratus male | CDS | F-serratus_M_contig1020 25160..25333 + |
1690962588.7706122-CDS-F-serratus_M_contig1020:25159..25333 | 1690962588.7706122-CDS-F-serratus_M_contig1020:25159..25333 | Fucus serratus male | CDS | F-serratus_M_contig1020 25160..25333 + |
1622928823.2219367-CDS-F-serratus_M_contig1020:25802..25953 | 1622928823.2219367-CDS-F-serratus_M_contig1020:25802..25953 | Fucus serratus male | CDS | F-serratus_M_contig1020 25803..25953 + |
1690962588.7801216-CDS-F-serratus_M_contig1020:25802..25953 | 1690962588.7801216-CDS-F-serratus_M_contig1020:25802..25953 | Fucus serratus male | CDS | F-serratus_M_contig1020 25803..25953 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1020.278.1 >prot_F-serratus_M_contig1020.278.1 ID=prot_F-serratus_M_contig1020.278.1|Name=mRNA_F-serratus_M_contig1020.278.1|organism=Fucus serratus male|type=polypeptide|length=215bp
MALYSHPLLSPPSVEHVLLGDKEKTEDPPPPGEMSRTFATHVLREIDVME HGAMIANIRDGVGELVFRITMAYAWKVEGRIADSFKNLMRCGEIIVQHPG LCRFIPWRHLMHCILNILAKDGNCAKYSELRGIYNSMMDQPGTPKVPPFE EWSGMEDICNGVFCRSIASARNSETSKRSNEHGTLPCPRAEDDYGGSRNA CISPSPLPYTPQLLD back to topmRNA from alignment at F-serratus_M_contig1020:23493..25953+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig1020.278.1 ID=mRNA_F-serratus_M_contig1020.278.1|Name=mRNA_F-serratus_M_contig1020.278.1|organism=Fucus serratus male|type=mRNA|length=2461bp|location=Sequence derived from alignment at F-serratus_M_contig1020:23493..25953+ (Fucus serratus male) GGGAAGTTCTGCGGCGTCAAACATGGCGTTGTACAGCCATCCCTTACTTT
CGCCGCCGTCGGTGGAACACGTGTTACTGGGGGATAAGGAGAAGACGGAG
GATCCTCCTCCCCCCGGGGAAATGAGCCGCACTTTCGCTACGCACGTCTT
ACGGGAGATCGATGTCATGGAGCATGGTGCAATGATGTACGCAGCTGATA
AGGTTTCATGTTGGGTGTGGGGAGGTAGTAGGGAGTGGGAGGGGAAGGGG
GGTTATGTGGTGCTTCCATGCATATCGTTCTTGTACTTTCGCGGGGCTGT
GGAAGAAAACCAAGTACTGTCCGGGATCCACCTGTGACCGTGTGTAGACT
GCACTCAACGTCACGACGATGAAAATAATGGAATTTCCTCAACCCTTACC
TGGGGAGAGAAAATAATGCAATCGTTTCTTTGCTTGCTGCTCCGCGGCTG
TCATCCCGTATCGGACTTTTGATAAACTTCCCGCATCGGAACGGAACGAA
CTTTAACGCATCATGACGGAATTCGACGGACGGAATTGAACTACTTCGCA
ACAGAGCCAATATTCGCGACGGTGTGGGCGAGCTGGTCTTCCGGATCACC
ATGGCCTATGCGTGGAAGGTTGAGGGCCGTATCGCCGATTCCTTCAAGAA
TCTCATGCGATGTGGCGAGATTATCGTACAGCACCCAGGGCTCTGTCGAT
TCATCCCGTGGTACGTTGGTTGCGATGGGCGTGTCGCATCGGGACATGAT
GGGGGTATATAATGCCTCCGATACTTTACGTATCGCACATGCCCACTACA
TACCAACAGTGGGTGTGGGAAAGAGAGGCTAATACTAATTGGTACATTGT
GATACCTGAAAAGGTAGCACCCGTTACTGGAACTACTTTGAGGGCTACTG
GCTCTGTGCCGGCGAACTCTCGGCGGTGAACGCCATCGGTGCGCATTTCG
TGATCTGATAAACTCGAGACTGGATGCGATGGCGTTTGGTGGTATAGATA
CTTGGGTGCCACCGTGGAAAGCGGTAGGGTTCCCGTGAGTAAGTACCAGA
GTCCGCCTGAATGTGGAGAATGACAAAGCTGACGCGGGATGGGACGGCCA
AACCTGTTTCGCGAGATCATTTTTTCAGGCACGAACGGAGACAGGGAAAT
GTTAATTTTCCCTGTTCAGCTGACTACGAGCAGGATTGGCAACCTTATCC
GGTTGATCCATACGCTGATATAAGCGATTACCACACATAGTGGGGAGAGG
GAATCGAACAAAATAGTGCGGGCTCTTTTGAATCTCCCAAAAGGTTGTCT
CGTACGCACGGCGATATTGTGCGTGAGGTCCACGATGTACCGTCATGTCT
GAACTGCTGTCGCGTCTTTACATCGGAACCACCTCAACGCCCCTTATCTC
GGTTTATGTTAGTGAGTCGACTCTTGCTTACCGTAGGTTTTTGTTTAAAA
TGTTCGGGTTTCCAGGCCCTCTTTTTCGGGAAGAGGAAAGAGGGGGAAAT
GGCCCTATTACTAACAGTATGTTAGAAATGCATCCAGCCCCCAAAACCCC
TGACAAGGCGTACCGATGGGCGCCATTATCGCTCCTGACTGGTAAGAGTG
ATAAAACCACGTTTTCCCGATCAAGAACGCTTTGTGGGGTTTCCGTTTCT
TGGGGCGGGCCGCGCAGGAGGCATCTGATGCACTGCATTTTAAATATTCT
TGCCAAGGACGGCAATTGTGCCAAGTACTCGGAGCTGCGGGGGATCTACA
ACTCCATGATGGACCAGCCAGGGACACCTAAAGTCCCTCCCTTCGAAGAG
TGGTCCGGCATGGAGGACATCTGCAACGGTGTTTTCTGTAGGTGGGATTC
CGGATGGATGTGGGTGGGTAGTATTTTTCATTTTGATCGTATTTCGGTTT
TCATGGGGGCGGTTAGGTGCACAATTGGCCGAATAATGTCACTTCACATG
CTATGCGTTCTGGCATACCAGGTACCTGGTACTTATTTTATTAAGCTAAG
ATTTTGTGGAAGGAAGTGGGAAAGAGATGTTTCAATCTCTCTTACACGTG
AGTGGGAAGTATTTTTCATTGTGATCGTATTTCGGTTTTCATGGGGGCGG
TTAGGTGCACACTTGGTTAAATAATGCCACATCACATGCTATGCGTTTTG
GAGGCATACCAGGTACCTGGTCCTTATTTTGTTGAGATTTTGTGGAAGGA
AGTGAGAAATAAATGTTTCAATCTCTCTTACCCGGGCGGAAAATCTGCCT
GCTGTGATATCGCGCCTTCCGCCCCCTCTATCTCTGCATGCCTTACGTAT
GTCCTAAAAGGTCGATTGCCTCTGCCAGAAACTCGGAGACGAGTAAGCGC
TCAAACGAACACGGTACTCTGCCGTGCCCTCGCGCTGAAGACGACTACGG
GGGCAGTCGTAATGCCTGCATCTCGCCATCACCCCTGCCCTATACGCCTC
AGCTGCTGGAT back to topCoding sequence (CDS) from alignment at F-serratus_M_contig1020:23493..25953+ >mRNA_F-serratus_M_contig1020.278.1 ID=mRNA_F-serratus_M_contig1020.278.1|Name=mRNA_F-serratus_M_contig1020.278.1|organism=Fucus serratus male|type=CDS|length=1290bp|location=Sequence derived from alignment at F-serratus_M_contig1020:23493..25953+ (Fucus serratus male) ATGGCGTTGTACAGCCATCCCTTACTTTCGCCGCCGTCGGTGGAACACGT GTTACTGGGGGATAAGGAGAAGACGGAGGATCCTCCTCCCCCCGGGGAAA TGAGCCGCACTTTCGCTACGCACGTCTTACGGGAGATCGATGTCATGGAG CATGGTGCAATGATATGGCGTTGTACAGCCATCCCTTACTTTCGCCGCCG TCGGTGGAACACGTGTTACTGGGGGATAAGGAGAAGACGGAGGATCCTCC TCCCCCCGGGGAAATGAGCCGCACTTTCGCTACGCACGTCTTACGGGAGA TCGATGTCATGGAGCATGGTGCAATGATAGCCAATATTCGCGACGGTGTG GGCGAGCTGGTCTTCCGGATCACCATGGCCTATGCGTGGAAGGTTGAGGG CCGTATCGCCGATTCCTTCAAGAATCTCATGCGATGTGGCGAGATTATCG TACAGCACCCAGGGCTCTGTCGATTCATCCCGTGAGCCAATATTCGCGAC GGTGTGGGCGAGCTGGTCTTCCGGATCACCATGGCCTATGCGTGGAAGGT TGAGGGCCGTATCGCCGATTCCTTCAAGAATCTCATGCGATGTGGCGAGA TTATCGTACAGCACCCAGGGCTCTGTCGATTCATCCCGTGGAGGCATCTG ATGCACTGCATTTTAAATATTCTTGCCAAGGACGGCAATTGTGCCAAGTA CTCGGAGCTGCGGGGGATCTACAACTCCATGATGGACCAGCCAGGGACAC CTAAAGTCCCTCCCTTCGAAGAGTGGTCCGGCATGGAGGACATCTGCAAC GGTGTTTTCTGTAGGAGGCATCTGATGCACTGCATTTTAAATATTCTTGC CAAGGACGGCAATTGTGCCAAGTACTCGGAGCTGCGGGGGATCTACAACT CCATGATGGACCAGCCAGGGACACCTAAAGTCCCTCCCTTCGAAGAGTGG TCCGGCATGGAGGACATCTGCAACGGTGTTTTCTGTAGGTCGATTGCCTC TGCCAGAAACTCGGAGACGAGTAAGCGCTCAAACGAACACGGTACTCTGC CGTGCCCTCGCGCTGAAGACGACTACGGGGGCAGTCGTAATGCCTGCATC TCGCCATCACCCCTGCCCTATACGCCTCAGCTGCTGGATGTCGATTGCCT CTGCCAGAAACTCGGAGACGAGTAAGCGCTCAAACGAACACGGTACTCTG CCGTGCCCTCGCGCTGAAGACGACTACGGGGGCAGTCGTAATGCCTGCAT CTCGCCATCACCCCTGCCCTATACGCCTCAGCTGCTGGAT back to top
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