mRNA_F-serratus_M_contig1020.278.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1020.278.1
Unique NamemRNA_F-serratus_M_contig1020.278.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1020.278.1 vs. uniprot
Match: D7FTC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC3_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 5.280e-39
Identity = 69/145 (47.59%), Postives = 89/145 (61.38%), Query Frame = 2 
Query:   89 EKTEDPPPPGEMSRTFATHVLREIDVMEHGAMIANIRDGVGELVFRITMAYAWKVEGRIADSFKNLMRCGEIIVQHPGLCRFIPWRHLMHCILNILAKDGNCAKYSELRGIYNSMMDQPGTPKVPPFEEWSGMEDICNGVFCRSI 523
            +++ +PPPPGEMS  FA  +L E D+M H      ++ GVGEL F   MAYA  ++GR + +   L RC +I +  PG+CR   W HL HC L  L   G   KY  LR  YNS+MD+P   +VPP EEW+GME IC  VFCRS+
Sbjct:  306 DQSTEPPPPGEMSLKFAAELLPECDLMVHATQTPEVKGGVGELYFHSIMAYANVLQGRQSWAMDGLWRCADIFLTSPGICRLTAWTHLAHCTLACLLLSGRHEKYESLRQAYNSVMDEPSAVRVPPAEEWTGMECICKHVFCRSL 450
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BLAST of mRNA_F-serratus_M_contig1020.278.1 vs. uniprot
Match: A0A6H5K678_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K678_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.270e-13
Identity = 39/113 (34.51%), Postives = 62/113 (54.87%), Query Frame = 2 
Query:  188 ANIRDGVGELVFRITMAYAWKVEGRIADSFKNLMRCGEIIVQHPGLCRFIPWRHLMHCILNILAKDGNCAKYSELRGIYNSMMDQPGTPKVPPFEEWSGMEDICNGVFCRSIA 526
            A ++ G+G L++   + +   ++  IA S  +  R    ++++PGLCR+    H +H  L  LA      +Y  LR  YN M     +P  PPFEEW+GM DIC+  +CR++A
Sbjct:  552 AKMQSGLGSLLYYGNLCFLQALDNEIAASVGSFHRSVSALLRYPGLCRYNSLSHNVHTQLWGLANARRREQYEALRAAYNPMRPARLSP-APPFEEWTGMSDICDHPYCRNVA 663
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BLAST of mRNA_F-serratus_M_contig1020.278.1 vs. uniprot
Match: D8LSE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSE2_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 4.830e-9
Identity = 34/88 (38.64%), Postives = 47/88 (53.41%), Query Frame = 2 
Query:  263 IADSFKNLMRCGEIIVQHPGLCRFIPWRHLMHCILNILAKDGNCAKYSELRGIYNSMMDQPGTPKVPPFEEWSGMEDICNGVFCRSIA 526
            IA S  +  R    ++++PGLCR+    H  H  L  LA       Y  LR  YN M     +P  PPF+EW+GM DIC+  +CR++A
Sbjct:  501 IAASAGSFHRSVSALLRYPGLCRYNSLSHNAHTQLWGLANARRREHYEALRAAYNPMRPASLSP-APPFDEWTGMSDICDHPYCRNVA 587
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BLAST of mRNA_F-serratus_M_contig1020.278.1 vs. uniprot
Match: A0A6H5K5S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5S2_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.940e-8
Identity = 37/122 (30.33%), Postives = 60/122 (49.18%), Query Frame = 2 
Query:  182 MIANIRDGVGELVFRI-TMAYAWKVEGRIADSFKNLMRCGEIIVQHPGLCRFIPWRHLMHCILNILAKDGNCAKYSELRGIYNSMMDQPGTPKVPPFEEWSGMEDICNGVFCRSIASARNSE 544
            ++ ++  GV E V     +++   +    A S ++  R    ++++PGLCR+ P  H  H  L  LA      +Y  LR  YN M     +P  PPFEE +G+ DIC+  +C  +A+    E
Sbjct:   27 VLIHLHRGVIERVLSSRNLSFLQALNNEPAASGESFHRSVSALLRYPGLCRYNPRSHSAHTQLWALANARRREQYEALRAAYNPMRPARLSP-APPFEECTGVSDICDHPYCMYVAAGARCE 147
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1020.278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FTC3_ECTSI5.280e-3947.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K678_9PHAE2.270e-1334.51Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LSE2_ECTSI4.830e-938.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5S2_9PHAE3.940e-830.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1020contigF-serratus_M_contig1020:23493..25953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size669
Cds size645
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1020.278.1prot_F-serratus_M_contig1020.278.1Fucus serratus malepolypeptideF-serratus_M_contig1020 23515..25953 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928823.15268-UTR-F-serratus_M_contig1020:23492..235141622928823.15268-UTR-F-serratus_M_contig1020:23492..23514Fucus serratus maleUTRF-serratus_M_contig1020 23493..23514 +
1690962588.7450967-UTR-F-serratus_M_contig1020:23492..235141690962588.7450967-UTR-F-serratus_M_contig1020:23492..23514Fucus serratus maleUTRF-serratus_M_contig1020 23493..23514 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928823.166117-CDS-F-serratus_M_contig1020:23514..236781622928823.166117-CDS-F-serratus_M_contig1020:23514..23678Fucus serratus maleCDSF-serratus_M_contig1020 23515..23678 +
1690962588.7542434-CDS-F-serratus_M_contig1020:23514..236781690962588.7542434-CDS-F-serratus_M_contig1020:23514..23678Fucus serratus maleCDSF-serratus_M_contig1020 23515..23678 +
1622928823.187402-CDS-F-serratus_M_contig1020:24046..242021622928823.187402-CDS-F-serratus_M_contig1020:24046..24202Fucus serratus maleCDSF-serratus_M_contig1020 24047..24202 +
1690962588.7621312-CDS-F-serratus_M_contig1020:24046..242021690962588.7621312-CDS-F-serratus_M_contig1020:24046..24202Fucus serratus maleCDSF-serratus_M_contig1020 24047..24202 +
1622928823.206002-CDS-F-serratus_M_contig1020:25159..253331622928823.206002-CDS-F-serratus_M_contig1020:25159..25333Fucus serratus maleCDSF-serratus_M_contig1020 25160..25333 +
1690962588.7706122-CDS-F-serratus_M_contig1020:25159..253331690962588.7706122-CDS-F-serratus_M_contig1020:25159..25333Fucus serratus maleCDSF-serratus_M_contig1020 25160..25333 +
1622928823.2219367-CDS-F-serratus_M_contig1020:25802..259531622928823.2219367-CDS-F-serratus_M_contig1020:25802..25953Fucus serratus maleCDSF-serratus_M_contig1020 25803..25953 +
1690962588.7801216-CDS-F-serratus_M_contig1020:25802..259531690962588.7801216-CDS-F-serratus_M_contig1020:25802..25953Fucus serratus maleCDSF-serratus_M_contig1020 25803..25953 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1020.278.1

>prot_F-serratus_M_contig1020.278.1 ID=prot_F-serratus_M_contig1020.278.1|Name=mRNA_F-serratus_M_contig1020.278.1|organism=Fucus serratus male|type=polypeptide|length=215bp
MALYSHPLLSPPSVEHVLLGDKEKTEDPPPPGEMSRTFATHVLREIDVME
HGAMIANIRDGVGELVFRITMAYAWKVEGRIADSFKNLMRCGEIIVQHPG
LCRFIPWRHLMHCILNILAKDGNCAKYSELRGIYNSMMDQPGTPKVPPFE
EWSGMEDICNGVFCRSIASARNSETSKRSNEHGTLPCPRAEDDYGGSRNA
CISPSPLPYTPQLLD
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mRNA from alignment at F-serratus_M_contig1020:23493..25953+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1020.278.1 ID=mRNA_F-serratus_M_contig1020.278.1|Name=mRNA_F-serratus_M_contig1020.278.1|organism=Fucus serratus male|type=mRNA|length=2461bp|location=Sequence derived from alignment at F-serratus_M_contig1020:23493..25953+ (Fucus serratus male)
GGGAAGTTCTGCGGCGTCAAACATGGCGTTGTACAGCCATCCCTTACTTT
CGCCGCCGTCGGTGGAACACGTGTTACTGGGGGATAAGGAGAAGACGGAG
GATCCTCCTCCCCCCGGGGAAATGAGCCGCACTTTCGCTACGCACGTCTT
ACGGGAGATCGATGTCATGGAGCATGGTGCAATGATGTACGCAGCTGATA
AGGTTTCATGTTGGGTGTGGGGAGGTAGTAGGGAGTGGGAGGGGAAGGGG
GGTTATGTGGTGCTTCCATGCATATCGTTCTTGTACTTTCGCGGGGCTGT
GGAAGAAAACCAAGTACTGTCCGGGATCCACCTGTGACCGTGTGTAGACT
GCACTCAACGTCACGACGATGAAAATAATGGAATTTCCTCAACCCTTACC
TGGGGAGAGAAAATAATGCAATCGTTTCTTTGCTTGCTGCTCCGCGGCTG
TCATCCCGTATCGGACTTTTGATAAACTTCCCGCATCGGAACGGAACGAA
CTTTAACGCATCATGACGGAATTCGACGGACGGAATTGAACTACTTCGCA
ACAGAGCCAATATTCGCGACGGTGTGGGCGAGCTGGTCTTCCGGATCACC
ATGGCCTATGCGTGGAAGGTTGAGGGCCGTATCGCCGATTCCTTCAAGAA
TCTCATGCGATGTGGCGAGATTATCGTACAGCACCCAGGGCTCTGTCGAT
TCATCCCGTGGTACGTTGGTTGCGATGGGCGTGTCGCATCGGGACATGAT
GGGGGTATATAATGCCTCCGATACTTTACGTATCGCACATGCCCACTACA
TACCAACAGTGGGTGTGGGAAAGAGAGGCTAATACTAATTGGTACATTGT
GATACCTGAAAAGGTAGCACCCGTTACTGGAACTACTTTGAGGGCTACTG
GCTCTGTGCCGGCGAACTCTCGGCGGTGAACGCCATCGGTGCGCATTTCG
TGATCTGATAAACTCGAGACTGGATGCGATGGCGTTTGGTGGTATAGATA
CTTGGGTGCCACCGTGGAAAGCGGTAGGGTTCCCGTGAGTAAGTACCAGA
GTCCGCCTGAATGTGGAGAATGACAAAGCTGACGCGGGATGGGACGGCCA
AACCTGTTTCGCGAGATCATTTTTTCAGGCACGAACGGAGACAGGGAAAT
GTTAATTTTCCCTGTTCAGCTGACTACGAGCAGGATTGGCAACCTTATCC
GGTTGATCCATACGCTGATATAAGCGATTACCACACATAGTGGGGAGAGG
GAATCGAACAAAATAGTGCGGGCTCTTTTGAATCTCCCAAAAGGTTGTCT
CGTACGCACGGCGATATTGTGCGTGAGGTCCACGATGTACCGTCATGTCT
GAACTGCTGTCGCGTCTTTACATCGGAACCACCTCAACGCCCCTTATCTC
GGTTTATGTTAGTGAGTCGACTCTTGCTTACCGTAGGTTTTTGTTTAAAA
TGTTCGGGTTTCCAGGCCCTCTTTTTCGGGAAGAGGAAAGAGGGGGAAAT
GGCCCTATTACTAACAGTATGTTAGAAATGCATCCAGCCCCCAAAACCCC
TGACAAGGCGTACCGATGGGCGCCATTATCGCTCCTGACTGGTAAGAGTG
ATAAAACCACGTTTTCCCGATCAAGAACGCTTTGTGGGGTTTCCGTTTCT
TGGGGCGGGCCGCGCAGGAGGCATCTGATGCACTGCATTTTAAATATTCT
TGCCAAGGACGGCAATTGTGCCAAGTACTCGGAGCTGCGGGGGATCTACA
ACTCCATGATGGACCAGCCAGGGACACCTAAAGTCCCTCCCTTCGAAGAG
TGGTCCGGCATGGAGGACATCTGCAACGGTGTTTTCTGTAGGTGGGATTC
CGGATGGATGTGGGTGGGTAGTATTTTTCATTTTGATCGTATTTCGGTTT
TCATGGGGGCGGTTAGGTGCACAATTGGCCGAATAATGTCACTTCACATG
CTATGCGTTCTGGCATACCAGGTACCTGGTACTTATTTTATTAAGCTAAG
ATTTTGTGGAAGGAAGTGGGAAAGAGATGTTTCAATCTCTCTTACACGTG
AGTGGGAAGTATTTTTCATTGTGATCGTATTTCGGTTTTCATGGGGGCGG
TTAGGTGCACACTTGGTTAAATAATGCCACATCACATGCTATGCGTTTTG
GAGGCATACCAGGTACCTGGTCCTTATTTTGTTGAGATTTTGTGGAAGGA
AGTGAGAAATAAATGTTTCAATCTCTCTTACCCGGGCGGAAAATCTGCCT
GCTGTGATATCGCGCCTTCCGCCCCCTCTATCTCTGCATGCCTTACGTAT
GTCCTAAAAGGTCGATTGCCTCTGCCAGAAACTCGGAGACGAGTAAGCGC
TCAAACGAACACGGTACTCTGCCGTGCCCTCGCGCTGAAGACGACTACGG
GGGCAGTCGTAATGCCTGCATCTCGCCATCACCCCTGCCCTATACGCCTC
AGCTGCTGGAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1020:23493..25953+

>mRNA_F-serratus_M_contig1020.278.1 ID=mRNA_F-serratus_M_contig1020.278.1|Name=mRNA_F-serratus_M_contig1020.278.1|organism=Fucus serratus male|type=CDS|length=1290bp|location=Sequence derived from alignment at F-serratus_M_contig1020:23493..25953+ (Fucus serratus male)
ATGGCGTTGTACAGCCATCCCTTACTTTCGCCGCCGTCGGTGGAACACGT
GTTACTGGGGGATAAGGAGAAGACGGAGGATCCTCCTCCCCCCGGGGAAA
TGAGCCGCACTTTCGCTACGCACGTCTTACGGGAGATCGATGTCATGGAG
CATGGTGCAATGATATGGCGTTGTACAGCCATCCCTTACTTTCGCCGCCG
TCGGTGGAACACGTGTTACTGGGGGATAAGGAGAAGACGGAGGATCCTCC
TCCCCCCGGGGAAATGAGCCGCACTTTCGCTACGCACGTCTTACGGGAGA
TCGATGTCATGGAGCATGGTGCAATGATAGCCAATATTCGCGACGGTGTG
GGCGAGCTGGTCTTCCGGATCACCATGGCCTATGCGTGGAAGGTTGAGGG
CCGTATCGCCGATTCCTTCAAGAATCTCATGCGATGTGGCGAGATTATCG
TACAGCACCCAGGGCTCTGTCGATTCATCCCGTGAGCCAATATTCGCGAC
GGTGTGGGCGAGCTGGTCTTCCGGATCACCATGGCCTATGCGTGGAAGGT
TGAGGGCCGTATCGCCGATTCCTTCAAGAATCTCATGCGATGTGGCGAGA
TTATCGTACAGCACCCAGGGCTCTGTCGATTCATCCCGTGGAGGCATCTG
ATGCACTGCATTTTAAATATTCTTGCCAAGGACGGCAATTGTGCCAAGTA
CTCGGAGCTGCGGGGGATCTACAACTCCATGATGGACCAGCCAGGGACAC
CTAAAGTCCCTCCCTTCGAAGAGTGGTCCGGCATGGAGGACATCTGCAAC
GGTGTTTTCTGTAGGAGGCATCTGATGCACTGCATTTTAAATATTCTTGC
CAAGGACGGCAATTGTGCCAAGTACTCGGAGCTGCGGGGGATCTACAACT
CCATGATGGACCAGCCAGGGACACCTAAAGTCCCTCCCTTCGAAGAGTGG
TCCGGCATGGAGGACATCTGCAACGGTGTTTTCTGTAGGTCGATTGCCTC
TGCCAGAAACTCGGAGACGAGTAAGCGCTCAAACGAACACGGTACTCTGC
CGTGCCCTCGCGCTGAAGACGACTACGGGGGCAGTCGTAATGCCTGCATC
TCGCCATCACCCCTGCCCTATACGCCTCAGCTGCTGGATGTCGATTGCCT
CTGCCAGAAACTCGGAGACGAGTAAGCGCTCAAACGAACACGGTACTCTG
CCGTGCCCTCGCGCTGAAGACGACTACGGGGGCAGTCGTAATGCCTGCAT
CTCGCCATCACCCCTGCCCTATACGCCTCAGCTGCTGGAT
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