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Homology
BLAST of mRNA_F-serratus_M_contig102.274.1 vs. uniprot
Match: A0A6H5JTI3_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI3_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 1.770e-18 Identity = 44/73 (60.27%), Postives = 54/73 (73.97%), Query Frame = 3
Query: 309 VLRQVQQINSFKPDPCSLSVAIEMCCRAGRLDHARSLMPHLQALSGTATTDGWIRDTSTILNASSGESKAVDE 527
VLRQ QQ+ KPDPCSL A+EMCCRAG+LDHAR+++PHL AL+G D WIR+T I NA G+ +A DE
Sbjct: 656 VLRQSQQVKPSKPDPCSLGAAVEMCCRAGKLDHARAILPHLTALAGNEGADAWIRETMGIFNACIGDLEARDE 728
BLAST of mRNA_F-serratus_M_contig102.274.1 vs. uniprot
Match: D7FQT1_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQT1_ECTSI) HSP 1 Score: 95.5 bits (236), Expect = 3.110e-18 Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 3
Query: 309 VLRQVQQINSFKPDPCSLSVAIEMCCRAGRLDHARSLMPHLQALSGTATTDGWIRDTSTILNASSGESKAVDEAIRYVNG 548
VLRQ QQ+ KPDPCSL A+EMCCRAG+LDHAR+++PHL AL+G D WIR+T I NA G+ +A +E VNG
Sbjct: 348 VLRQSQQVKPSKPDPCSLGAAVEMCCRAGKLDHARAILPHLTALAGNEGADAWIRETMGIFNACIGDLEAREEPA--VNG 425
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 96.3 |
Seed ortholog evalue | 1.9e-17 |
Seed eggNOG ortholog | 2880.D7FQT1 |
Hectar predicted targeting category | other localisation |
EggNOG free text desc. | endonuclease activity |
EggNOG OGs | KOG4197@1,KOG4197@2759 |
Ec32 ortholog description | hypothetical protein |
Ec32 ortholog | Ec-16_000625.1 |
COG Functional cat. | S |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
Exons | 7 |
Model size | 953 |
Cds size | 663 |
Stop | 1 |
Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928818.7762141-UTR-F-serratus_M_contig102:809877..810051 | 1622928818.7762141-UTR-F-serratus_M_contig102:809877..810051 | Fucus serratus male | UTR | F-serratus_M_contig102 809878..810051 - |
1690962586.5236437-UTR-F-serratus_M_contig102:809877..810051 | 1690962586.5236437-UTR-F-serratus_M_contig102:809877..810051 | Fucus serratus male | UTR | F-serratus_M_contig102 809878..810051 - |
1622928818.7865171-UTR-F-serratus_M_contig102:810462..810573 | 1622928818.7865171-UTR-F-serratus_M_contig102:810462..810573 | Fucus serratus male | UTR | F-serratus_M_contig102 810463..810573 - |
1690962586.5414755-UTR-F-serratus_M_contig102:810462..810573 | 1690962586.5414755-UTR-F-serratus_M_contig102:810462..810573 | Fucus serratus male | UTR | F-serratus_M_contig102 810463..810573 - |
1622928818.8959963-UTR-F-serratus_M_contig102:812276..812281 | 1622928818.8959963-UTR-F-serratus_M_contig102:812276..812281 | Fucus serratus male | UTR | F-serratus_M_contig102 812277..812281 - |
1690962586.616162-UTR-F-serratus_M_contig102:812276..812281 | 1690962586.616162-UTR-F-serratus_M_contig102:812276..812281 | Fucus serratus male | UTR | F-serratus_M_contig102 812277..812281 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928818.803329-CDS-F-serratus_M_contig102:810573..810611 | 1622928818.803329-CDS-F-serratus_M_contig102:810573..810611 | Fucus serratus male | CDS | F-serratus_M_contig102 810574..810611 - |
1690962586.553116-CDS-F-serratus_M_contig102:810573..810611 | 1690962586.553116-CDS-F-serratus_M_contig102:810573..810611 | Fucus serratus male | CDS | F-serratus_M_contig102 810574..810611 - |
1622928818.8174791-CDS-F-serratus_M_contig102:810896..810944 | 1622928818.8174791-CDS-F-serratus_M_contig102:810896..810944 | Fucus serratus male | CDS | F-serratus_M_contig102 810897..810944 - |
1690962586.568736-CDS-F-serratus_M_contig102:810896..810944 | 1690962586.568736-CDS-F-serratus_M_contig102:810896..810944 | Fucus serratus male | CDS | F-serratus_M_contig102 810897..810944 - |
1622928818.831534-CDS-F-serratus_M_contig102:810961..811039 | 1622928818.831534-CDS-F-serratus_M_contig102:810961..811039 | Fucus serratus male | CDS | F-serratus_M_contig102 810962..811039 - |
1690962586.5810707-CDS-F-serratus_M_contig102:810961..811039 | 1690962586.5810707-CDS-F-serratus_M_contig102:810961..811039 | Fucus serratus male | CDS | F-serratus_M_contig102 810962..811039 - |
1622928818.8532727-CDS-F-serratus_M_contig102:811421..811524 | 1622928818.8532727-CDS-F-serratus_M_contig102:811421..811524 | Fucus serratus male | CDS | F-serratus_M_contig102 811422..811524 - |
1690962586.5900955-CDS-F-serratus_M_contig102:811421..811524 | 1690962586.5900955-CDS-F-serratus_M_contig102:811421..811524 | Fucus serratus male | CDS | F-serratus_M_contig102 811422..811524 - |
1622928818.8688898-CDS-F-serratus_M_contig102:811707..811932 | 1622928818.8688898-CDS-F-serratus_M_contig102:811707..811932 | Fucus serratus male | CDS | F-serratus_M_contig102 811708..811932 - |
1690962586.600908-CDS-F-serratus_M_contig102:811707..811932 | 1690962586.600908-CDS-F-serratus_M_contig102:811707..811932 | Fucus serratus male | CDS | F-serratus_M_contig102 811708..811932 - |
1622928818.8801942-CDS-F-serratus_M_contig102:812105..812276 | 1622928818.8801942-CDS-F-serratus_M_contig102:812105..812276 | Fucus serratus male | CDS | F-serratus_M_contig102 812106..812276 - |
1690962586.608688-CDS-F-serratus_M_contig102:812105..812276 | 1690962586.608688-CDS-F-serratus_M_contig102:812105..812276 | Fucus serratus male | CDS | F-serratus_M_contig102 812106..812276 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig102.274.1 >prot_F-serratus_M_contig102.274.1 ID=prot_F-serratus_M_contig102.274.1|Name=mRNA_F-serratus_M_contig102.274.1|organism=Fucus serratus male|type=polypeptide|length=221bp
MTRYGVRPNEKFFMALLRATGEGGRADKTMDTLREMTKMGVTPSVRSYNC AVGACATAGGWQLAVTLLSEMLQGGMHPAGFAVASTIRACGIANEWRKGL QVLRQVQQINSFKPDPCSLSVAIEMCCRAGRLDHARSLMPHLQALSGTAT TDGWIRDTSTILNASSGESKAVDEAIRYVNGDGVDVNRNDGRGWQKQRER RLFKLFRAHSGKGTSPVGAG* back to topmRNA from alignment at F-serratus_M_contig102:809878..812281- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig102.274.1 ID=mRNA_F-serratus_M_contig102.274.1|Name=mRNA_F-serratus_M_contig102.274.1|organism=Fucus serratus male|type=mRNA|length=2404bp|location=Sequence derived from alignment at F-serratus_M_contig102:809878..812281- (Fucus serratus male) AGGACATGACAAGATACGGCGTCCGGCCGAACGAAAAATTCTTCATGGCG
CTCCTCCGGGCAACAGGGGAAGGCGGTCGCGCCGACAAAACTATGGATAC
GTTGCGGGAGATGACGAAAATGGGTGTCACGCCGAGTGTCAGGAGCTACA
ATTGCGCCGTTGGGGCGTGTGCCACGGTACAGTACCGACACCGACAGCAC
AAACGATTCCATATCGACCTGTCCATGACACGGCTTTGTCGGAAATTCGT
CGTCGCAGACTCGGCAGAGAATAGGCGCGGTTGTTGCGTCTAATGAAGTC
TTGCTGTAATAAATACTAAACACTTTTACATGGTTTTGTTGCCTTGCAGG
CCGGAGGGTGGCAGCTGGCAGTAACCCTCTTGTCGGAGATGTTGCAAGGA
GGCATGCACCCGGCGGGATTTGCTGTTGCATCCACCATCCGAGCTTGCGG
TATAGCGAACGAGTGGCGGAAGGGCCTTCAAGTGCTGCGACAAGTACAGC
AAATCAACTCGTTCAAGCCAGACCCATGCAGTTTGAGCGTGGCGATAGAG
ATGTGCTGTCGGGCAGGGAGGCTGGTAAGTGTTACGCCGGTCGCTCAAAA
TTTGGTCCATGGATATCGCTTCTTTGGGGGTGCTCGATAGCGAGACTAGG
CATGTATGCAACGGACTACTCGGCGGTATGTAGCCGTGCTGTGTCGCATA
CTGGTACTTAGGTAGGTACTGTGTCCCCACTCTGCCCCCTTGTGCTGTGT
TGGACAGGACCATGCGCGAAGTTTAATGCCCCACTTACAAGCATTGTCGG
GGACCGCTACGACTGATGGTTGGATTCGCGACACATCTACCATCCTGAAT
GCGAGCTCAGGCGAGGCCCGATCCGAGCAAGTTGCTGTTAATACTCGGGG
AAGACCTTACCTGTCGCTGAGAGCATGCCTACCAATTACCAATTACTTTA
TTCGCCGCCAGTGACAGTTATCGCAATTAAATATTTGTTAGAACTACGAC
AAAATACTTGAGCATTGTACACCGTTTAAGAAATGTAACTTGTTATTTTT
TAGGCCACCGTCTTGTCTTTAAGATACTTGAAAGTAAATGATTGCTTCAT
GCGGATTTATGTGAGCAAGCAAGAGGACGTTGCAGTCCTTAGGATATAAT
ACTCTTTGATGCCCAGACGTGAATGCATCCATTTTCGAAAGGCTTGACCT
TTCTGACTTAACATTAGGGACTCATTTGCGCCACGGATGCAGGCGAATCA
AAGGCCGTTGACGAAGCGATTAGATACGTGAACGGAGATGGCGTGGATGT
CAACAGAAACGACGGCCGGGAGCTAATTGCGACTGCTGTTGGCAAAAACA
GCGCGAGAGGCGACTCTTCAAACTCTTCAGAGCGCGTTGAGTTCTGCAAT
GTGCCGGAGATAGTCCGGCTCCACTCCTAATAATACTGTGTAGCTCGAAA
GTCATATTGGGAGTGTCTGATGAAATAGCTCGGTAGGTATTATAGTCTTT
ACCGATTGTGCAGTTCTGTTCTGTAGTCAAGGCGTGCTCTGTCCTTGAGT
CTTGAGCTGAGCTGCCATGGTAATGCAACATTCATATTTTCATACGCTTC
ATGCGAAAATTCAGACGCCGTCCTGCATCGTGTTCCCGCTCGGACATTTG
TCTGTTGGGTCGATTGCCAGATTCAGGAAAAGGGACGAGCCCCGTGGGCG
CAGGATAAGCGCCTCAACAAGCGCTCGCTCAAGCGAATTCCGGTCGATAT
TAAAGAGGCTTCGCAGGGCGTTCGGCATGATGATCCAGAAGAGCTCCCGG
CAATTCGCTTTTACCGCAGGTGTGGCCGATGTCACGTTTTTGCTTTTTTC
GCAATCACGAGTGAACAAAACAAATGCCCAATAAGTGACCACATGTTTCG
ATGTCAATCTCTTTTGCGGTATATCTATCGATGATACATGATACATGGAA
TACGTGGTCACTTTGTGTTAATATTGGGATTTGCGACCAAGTCCTTCGAT
ATCACCTGAGTGTCGGCATACTCTGTCTTATTACGAGAAATCCTGCAGGC
ACGTCCCTTCATAATCCCCATTCGAATCTACGCAGTAGTATGTTCCTTGC
GATAATGTATACCAGGTACACTTTAACTCAGCCCCTCCCTCTCCCTCTCC
CTCGCTGATGCATTGCATTGCATTACATTACATTGCCTGTGGTATGAAAT
CACGACCTCACCGTGGCCTCGTACAAACAGGCACACAAGTCTTGCGAACT
GATGTGCGGCGTGATCGGCGAAGTGAATAAGCCAATTAAGTCGCTAGCTA
GCTTATCACATCACGCGCGAGGGACGTTACATAGACCAAGCATCTGCGAA
CTTTTGTATTGAGGTTATCCCACGGTGATAAACACACAAATCGCACCAGG
GGCA back to topCoding sequence (CDS) from alignment at F-serratus_M_contig102:809878..812281- >mRNA_F-serratus_M_contig102.274.1 ID=mRNA_F-serratus_M_contig102.274.1|Name=mRNA_F-serratus_M_contig102.274.1|organism=Fucus serratus male|type=CDS|length=1326bp|location=Sequence derived from alignment at F-serratus_M_contig102:809878..812281- (Fucus serratus male) ATGACAAGATACGGCGTCCGGCCGAACGAAAAATTCTTCATGGCGCTCCT CCGGGCAACAGGGGAAGGCGGTCGCGCCGACAAAACTATGGATACGTTGC GGGAGATGACGAAAATGGGTGTCACGCCGAGTGTCAGGAGCTACAATTGC GCCGTTGGGGCGTGTGCCACGATGACAAGATACGGCGTCCGGCCGAACGA AAAATTCTTCATGGCGCTCCTCCGGGCAACAGGGGAAGGCGGTCGCGCCG ACAAAACTATGGATACGTTGCGGGAGATGACGAAAATGGGTGTCACGCCG AGTGTCAGGAGCTACAATTGCGCCGTTGGGGCGTGTGCCACGGCCGGAGG GTGGCAGCTGGCAGTAACCCTCTTGTCGGAGATGTTGCAAGGAGGCATGC ACCCGGCGGGATTTGCTGTTGCATCCACCATCCGAGCTTGCGGTATAGCG AACGAGTGGCGGAAGGGCCTTCAAGTGCTGCGACAAGTACAGCAAATCAA CTCGTTCAAGCCAGACCCATGCAGTTTGAGCGTGGCGATAGAGATGTGCT GTCGGGCAGGGAGGCTGGCCGGAGGGTGGCAGCTGGCAGTAACCCTCTTG TCGGAGATGTTGCAAGGAGGCATGCACCCGGCGGGATTTGCTGTTGCATC CACCATCCGAGCTTGCGGTATAGCGAACGAGTGGCGGAAGGGCCTTCAAG TGCTGCGACAAGTACAGCAAATCAACTCGTTCAAGCCAGACCCATGCAGT TTGAGCGTGGCGATAGAGATGTGCTGTCGGGCAGGGAGGCTGGACCATGC GCGAAGTTTAATGCCCCACTTACAAGCATTGTCGGGGACCGCTACGACTG ATGGTTGGATTCGCGACACATCTACCATCCTGAATGCGAGCTCAGGACCA TGCGCGAAGTTTAATGCCCCACTTACAAGCATTGTCGGGGACCGCTACGA CTGATGGTTGGATTCGCGACACATCTACCATCCTGAATGCGAGCTCAGGC GAATCAAAGGCCGTTGACGAAGCGATTAGATACGTGAACGGAGATGGCGT GGATGTCAACAGAAACGACGGCCGGGGCGAATCAAAGGCCGTTGACGAAG CGATTAGATACGTGAACGGAGATGGCGTGGATGTCAACAGAAACGACGGC CGGGGTTGGCAAAAACAGCGCGAGAGGCGACTCTTCAAACTCTTCAGAGC GCGTTGGCAAAAACAGCGCGAGAGGCGACTCTTCAAACTCTTCAGAGCGC ATTCAGGAAAAGGGACGAGCCCCGTGGGCGCAGGATAAATTCAGGAAAAG GGACGAGCCCCGTGGGCGCAGGATAA back to top
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