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Homology
BLAST of mRNA_F-serratus_M_contig102.262.1 vs. uniprot
Match: D8LU32_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU32_ECTSI) HSP 1 Score: 129 bits (325), Expect = 5.910e-28 Identity = 71/112 (63.39%), Postives = 81/112 (72.32%), Query Frame = 2
Query: 1121 WKKSLPEPLGAEAKKYAATYLATCLRQTLQKQPDERARSSINTTVQLAHAIKPVLEYDERPLSLSGQGQAQDAFEARCFVWSRLEELKGLIVVKEAKGVSIKAARERAAQKI 1456
WK SLP L A++YAATYLATC+RQ LQ+ PD+ AR ++N+ QLA IKPV EYDER L G G FEARC V SRLEEL GLI+VKEAKG SIKAARE AA K+
Sbjct: 964 WKVSLPVTLSPAARRYAATYLATCVRQALQRNPDQMARCTLNSAAQLAQTIKPVFEYDER--KLKGSGVNTCFFEARCIVTSRLEELAGLILVKEAKGSSIKAAREGAAVKV 1073
BLAST of mRNA_F-serratus_M_contig102.262.1 vs. uniprot
Match: A0A0H5R4I3_9EUKA (Uncharacterized protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R4I3_9EUKA) HSP 1 Score: 62.4 bits (150), Expect = 1.570e-6 Identity = 50/166 (30.12%), Postives = 84/166 (50.60%), Query Frame = 1
Query: 31 GSKLDTISKLLVEHKGRCDRSRGRFSALLIVSTRDLARTTPETLELMPSLQ--PFLRAEHVLVSSEKISFMRRASLDRLGTDLSQTNLVVSTTACSEGLEVPDCGLVVCA----SGTALAELRGRLNFGKNCKLVGLSRRCEEAPGERFRTLCQRDSTMLGAIETI 510
GS ++ I +L+ +H D FSAL+ VSTR LA +EL+ + PF++AE ++ SE ++ L + + N+VVST+ C EG+++P C LV+C S + ++RGR+ ++ + + + R E L R+ M AI+ I
Sbjct: 477 GSVVNKIEELVTQHY---DADPKGFSALIFVSTRGLA------IELVKHISRIPFIKAEAMVGISEMTLAQQKTVLSKFRDQV--INVVVSTSVCGEGVDIPACCLVICTCLPNSMISFVQIRGRIRSNESARYLSMVR---ERRDMHVEGLVLREDNMNEAIQQI 628
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 119.4 |
Seed ortholog evalue | 2.2e-24 |
Seed eggNOG ortholog | 2880.D8LU32 |
KEGG ko | ko:K11592 |
KEGG Pathway | ko05206,map05206 |
Hectar predicted targeting category | other localisation |
EggNOG free text desc. | ribonuclease III activity |
EggNOG OGs | COG0571@1,KOG0701@2759 |
COG Functional cat. | K |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko00001,ko01000,ko03036 |
Exons | 3 |
Model size | 1598 |
Cds size | 681 |
Stop | 1 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928819.5203357-UTR-F-serratus_M_contig102:137761..138125 | 1622928819.5203357-UTR-F-serratus_M_contig102:137761..138125 | Fucus serratus male | UTR | F-serratus_M_contig102 137762..138125 - |
1690962586.8375561-UTR-F-serratus_M_contig102:137761..138125 | 1690962586.8375561-UTR-F-serratus_M_contig102:137761..138125 | Fucus serratus male | UTR | F-serratus_M_contig102 137762..138125 - |
1622928819.5398722-UTR-F-serratus_M_contig102:139135..139687 | 1622928819.5398722-UTR-F-serratus_M_contig102:139135..139687 | Fucus serratus male | UTR | F-serratus_M_contig102 139136..139687 - |
1690962586.849528-UTR-F-serratus_M_contig102:139135..139687 | 1690962586.849528-UTR-F-serratus_M_contig102:139135..139687 | Fucus serratus male | UTR | F-serratus_M_contig102 139136..139687 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928819.5542054-CDS-F-serratus_M_contig102:139687..139958 | 1622928819.5542054-CDS-F-serratus_M_contig102:139687..139958 | Fucus serratus male | CDS | F-serratus_M_contig102 139688..139958 - |
1690962586.857979-CDS-F-serratus_M_contig102:139687..139958 | 1690962586.857979-CDS-F-serratus_M_contig102:139687..139958 | Fucus serratus male | CDS | F-serratus_M_contig102 139688..139958 - |
1622928819.5684586-CDS-F-serratus_M_contig102:140656..141066 | 1622928819.5684586-CDS-F-serratus_M_contig102:140656..141066 | Fucus serratus male | CDS | F-serratus_M_contig102 140657..141066 - |
1690962586.8662956-CDS-F-serratus_M_contig102:140656..141066 | 1690962586.8662956-CDS-F-serratus_M_contig102:140656..141066 | Fucus serratus male | CDS | F-serratus_M_contig102 140657..141066 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig102.262.1 >prot_F-serratus_M_contig102.262.1 ID=prot_F-serratus_M_contig102.262.1|Name=mRNA_F-serratus_M_contig102.262.1|organism=Fucus serratus male|type=polypeptide|length=227bp
VVGSKVTGALGSKLDTISKLLVEHKGRCDRSRGRFSALLIVSTRDLARTT PETLELMPSLQPFLRAEHVLVSSEKISFMRRASLDRLGTDLSQTNLVVST TACSEGLEVPDCGLVVCASGTALAELRGRLNFGKNCKLVGLSRRCEEAPG ERFRTLCQRDSTMLGAIETIIGDVSATEVSAASVTSTHVAPPNTQLRFLG RTPPHGVSWYRCRHRRSLRWRWLWWR* back to topmRNA from alignment at F-serratus_M_contig102:137762..141066- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig102.262.1 ID=mRNA_F-serratus_M_contig102.262.1|Name=mRNA_F-serratus_M_contig102.262.1|organism=Fucus serratus male|type=mRNA|length=3305bp|location=Sequence derived from alignment at F-serratus_M_contig102:137762..141066- (Fucus serratus male) GTAGTGGGCAGCAAGGTCACTGGAGCGCTGGGCTCAAAGCTGGACACGAT
CTCGAAACTGTTGGTAGAGCATAAGGGTCGGTGCGACCGGTCCCGTGGTA
GATTTTCAGCGCTATTGATCGTTTCCACACGCGACCTGGCCAGGACAACT
CCCGAAACACTTGAGCTGATGCCCTCGCTGCAACCGTTTCTGAGGGCAGA
GCATGTCCTGGTATCGTCGGAAAAGATCAGTTTTATGCGGCGGGCTTCGC
TCGATAGGCTTGGTACAGACCTAAGCCAGACAAACCTGGTCGTTTCGACA
ACCGCTTGCAGCGAGGGTCTAGAGGTTCCCGACTGCGGGCTGGTGGTCTG
CGCCAGCGGAACTGCGCTCGCGGAGCTCAGAGGACGCCTTAATTTTGGTA
AAAACTGCAAGTGAGTGAGGGGTTAAGAAGAGACTTGGCGACGGGCTGCA
TATGTAGCGTGGCCCTAGGTCGCTTGTGTGGGCTGCCGTAGAGGAACATA
TTGTGCTCGAGTGTGCCTCGAAGCGTCCATCCGGTTGTATATCCAGTAAT
TTGGTAACATCATTTTTGTGGGTCGCTTCAGTTCGCCACGGCTCCCGTTC
GGCTTGAAATATATAGAAACGCAAAGCCAAGTATCTGGAGAAGAGGATGG
GCATGCCTCTTCTTGTACTTGAATATGTCTTAGATATGTTCTCACTCCTC
ACTGCTGACGACGCCAATTGCTCATGACACCATTGGTAGCAAGAGGAGCA
GAGCATCCTCAAAAGCAGTGCAAGTAGCGTGTTGCTATTTTTACGAGAAA
TCAAGAGGAGTTCGACTTCTGGTTTGCGCATTTTCCCCGTTGCGTAGACA
AGAGACTTACTGATTTGTGTGTTTTTCATTGTACCATGTCACGCGTGACG
AATCGCCCATGAATCACCTTCGTTCAGCCAGAAAGCTGGCGCTGTCAATG
TTCGCGTCCATTCCTTTATTTCGTCGATTCATATTAATAATTCCTCGGAC
AACGAAGGAATACACCAAAATAGTATTAGTGCCTTACCTACCCTGACAGT
GCTAGTGACGCTAACATGATACGTTGGTGACGGTTTGCTTTGATGATACT
GATGACAGGTTGGTGGGTCTGAGCCGACGCTGTGAAGAGGCCCCTGGTGA
ACGCTTTCGAACCCTCTGCCAGCGCGACAGTACGATGTTGGGGGCCATCG
AGACCATCATTGGAGACGTTTCGGCTACCGAAGTCTCCGCCGCTTCTGTG
ACCTCTACCCATGTCGCCCCTCCGAACACCCAACTTCGCTTCCTAGGACG
AACCCCACCCCACGGGGTCTCCTGGTACCGCTGCAGGCACCGCCGATCAC
TTAGGTGGCGGTGGCTTTGGTGGCGATAGCCCTGGTGGGTCTGGTAGCGA
TGGTGACGGAGATGGCGGCGGTGGCGGAGTCGCTTTGGTTAAGATACCTA
ACTCAGGGATCTCAGCGAAGGTGGCGGTACAAGAATCGACGCAAGCCTCG
AAATCAGCGTCAGAGCCAGCATCACCGTCTTCTTCAGTGCCATCCTCGGC
GTCAGCACGAGCTCCAGTCTCAACGTCAGAATCGGCGGCGGCGGTAGCGA
CCGCGGCGACCAGCGTCACCCCGACAGAGAGCCCAGCAGACGCTGCGGCG
GCACGTGCGATCGTTAAGCCCCCACGAGCCGCGGCCATGATTGTGCCGGA
TAAGCCTCCCAGCGAGACGTCCAATGACAACGGCGACGGTGATGGTGCCG
AAAAGGGTGGAACTCAAAAGGGTGGGGCAGCGGCGGCAGCTACGGATTCC
GAGGGAGGGGCGAAGGGGTGGAAAAAGTCGCTGCCCGAACCCCTTGGCGC
CGAAGCGAAGAAATACGCCGCCACTTACCTGGCGACATGCCTACGCCAGA
CACTGCAGAAGCAACCCGATGAGAGGGCGAGGTGAGTCTAGCACTATTAA
TAGCAGTATAACAATAGCAGTATAGCACTATAATAGCAGTTTGTGTTGTT
TGTTGCCATCCCATTTATTCTGGACGCCAGACTACACCTTTCGGTTAGTA
TGTTAATACCGTATGTGGACAGGACGCACCGGCCGGGGTCGCACAGGAGG
AAGGCCATACCTTCCTTCTGCGGTGCTTGCCTTCATTTTTTTATCGCGAG
AAGGATTCAGCCGTCCATTTCCCCTGTCGACCGTGAAGTCGAATGTTGTA
TCCACGATATAATCGTTCTCCACTTGTTGGGCATAATGTGAGAAAATCCC
AGTTCGCGTAACTGTGCCGAGATTCGGACTCACATTCTAACGTTAGAAAA
TTTCGAGGTTACCGACTGAACCACGGGGCGACCAATAGCTTGATATGATC
TTATTAGTACAGGAATGGGTGGGGAACATCGATGTACAGTACGGAGTATA
TATTTTAGTGTAAAAGCGCAGAATTTTTCTTGGGCCTACTGTATTGTTGG
GAAGACTGGTGTTTCTGAGAGCACTGGACAGCACACAATATTACGTGTGA
AAACCTAATCCACCGTTCTACATGGCTTACTTGACCTACTTGAATCAATA
TGTGTTTTTACAGAACCTGGATGGTTTTTACATTGTTTTTCGGGGATGGA
TTTGATTACATCATACTAGAAAAATTTAATTGAGAATCGAATGAAATGGT
AATGAAGCATCTTGTACAGAGTATTTTTCGGAAATAATTTAATATTACTG
TATAGCAGTATGCCTAAATCTACTGAATGAAACTATTAATAGTTATGAAG
CACCATGTATATATCAATTATTTATCGTCGGAAAATAATGGAGTACTTTA
AATAAAACGCTTTTGCGTGTTATCTACCATTCGAACTTAAAAAAAAAAAA
TGATTGAAATTGGTCTAAAAAATGTATATATACATGGCGGTTGCACGATG
TTCGTCCTTTGGTTGGTATCTTTTGGTTCTCGCCTATTCAGGTCCTCGAT
CAACACCACAGTGCAGCTGGCACACGCCATCAAGCCAGTGTTGGAGTACG
ACGAAAGGCCATTGTCCTTGTCGGGGCAGGGGCAGGCGCAAGACGCGTTT
GAGGCGAGGTGCTTCGTATGGTCGAGGTTGGAAGAGCTGAAAGGCCTCAT
CGTCGTGAAGGAGGCCAAGGGAGTTTCCATCAAGGCCGCTCGAGAGCGTG
CGGCGCAGAAGATTATGCAATACCTGCTGCAAAGAGAGGGCACGAAGGAG
GAGACGCCTTCGAGCTCACACGTCTCCCCTTCGTCATCGAGAAAGCCGGA
CGCCGTGAAACCCTAGAAACCCACACCAACGCCTCCCCTTCGCCATCGAG
ACCCC back to topCoding sequence (CDS) from alignment at F-serratus_M_contig102:137762..141066- >mRNA_F-serratus_M_contig102.262.1 ID=mRNA_F-serratus_M_contig102.262.1|Name=mRNA_F-serratus_M_contig102.262.1|organism=Fucus serratus male|type=CDS|length=1362bp|location=Sequence derived from alignment at F-serratus_M_contig102:137762..141066- (Fucus serratus male) GTAGTGGGCAGCAAGGTCACTGGAGCGCTGGGCTCAAAGCTGGACACGAT CTCGAAACTGTTGGTAGAGCATAAGGGTCGGTGCGACCGGTCCCGTGGTA GATTTTCAGCGCTATTGATCGTTTCCACACGCGACCTGGCCAGGACAACT CCCGAAACACTTGAGCTGATGCCCTCGCTGCAACCGTTTCTGAGGGCAGA GCATGTCCTGGTATCGTCGGAAAAGATCAGTTTTATGCGGCGGGCTTCGC TCGATAGGCTTGGTACAGACCTAAGCCAGACAAACCTGGTCGTTTCGACA ACCGCTTGCAGCGAGGGTCTAGAGGTTCCCGACTGCGGGCTGGTGGTCTG CGCCAGCGGAACTGCGCTCGCGGAGCTCAGAGGACGCCTTAATTTTGGTA AAAACTGCAAGTAGTGGGCAGCAAGGTCACTGGAGCGCTGGGCTCAAAGC TGGACACGATCTCGAAACTGTTGGTAGAGCATAAGGGTCGGTGCGACCGG TCCCGTGGTAGATTTTCAGCGCTATTGATCGTTTCCACACGCGACCTGGC CAGGACAACTCCCGAAACACTTGAGCTGATGCCCTCGCTGCAACCGTTTC TGAGGGCAGAGCATGTCCTGGTATCGTCGGAAAAGATCAGTTTTATGCGG CGGGCTTCGCTCGATAGGCTTGGTACAGACCTAAGCCAGACAAACCTGGT CGTTTCGACAACCGCTTGCAGCGAGGGTCTAGAGGTTCCCGACTGCGGGC TGGTGGTCTGCGCCAGCGGAACTGCGCTCGCGGAGCTCAGAGGACGCCTT AATTTTGGTAAAAACTGCAAGTTGGTGGGTCTGAGCCGACGCTGTGAAGA GGCCCCTGGTGAACGCTTTCGAACCCTCTGCCAGCGCGACAGTACGATGT TGGGGGCCATCGAGACCATCATTGGAGACGTTTCGGCTACCGAAGTCTCC GCCGCTTCTGTGACCTCTACCCATGTCGCCCCTCCGAACACCCAACTTCG CTTCCTAGGACGAACCCCACCCCACGGGGTCTCCTGGTACCGCTGCAGGC ACCGCCGATCACTTAGGTGGCGGTGGCTTTGGTGGCGATAGGTTGGTGGG TCTGAGCCGACGCTGTGAAGAGGCCCCTGGTGAACGCTTTCGAACCCTCT GCCAGCGCGACAGTACGATGTTGGGGGCCATCGAGACCATCATTGGAGAC GTTTCGGCTACCGAAGTCTCCGCCGCTTCTGTGACCTCTACCCATGTCGC CCCTCCGAACACCCAACTTCGCTTCCTAGGACGAACCCCACCCCACGGGG TCTCCTGGTACCGCTGCAGGCACCGCCGATCACTTAGGTGGCGGTGGCTT TGGTGGCGATAG back to top
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