mRNA_F-serratus_M_contig102.262.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig102.262.1
Unique NamemRNA_F-serratus_M_contig102.262.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig102.262.1 vs. uniprot
Match: D8LU32_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU32_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 5.910e-28
Identity = 71/112 (63.39%), Postives = 81/112 (72.32%), Query Frame = 2 
Query: 1121 WKKSLPEPLGAEAKKYAATYLATCLRQTLQKQPDERARSSINTTVQLAHAIKPVLEYDERPLSLSGQGQAQDAFEARCFVWSRLEELKGLIVVKEAKGVSIKAARERAAQKI 1456
            WK SLP  L   A++YAATYLATC+RQ LQ+ PD+ AR ++N+  QLA  IKPV EYDER   L G G     FEARC V SRLEEL GLI+VKEAKG SIKAARE AA K+
Sbjct:  964 WKVSLPVTLSPAARRYAATYLATCVRQALQRNPDQMARCTLNSAAQLAQTIKPVFEYDER--KLKGSGVNTCFFEARCIVTSRLEELAGLILVKEAKGSSIKAAREGAAVKV 1073
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BLAST of mRNA_F-serratus_M_contig102.262.1 vs. uniprot
Match: A0A0H5R4I3_9EUKA (Uncharacterized protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R4I3_9EUKA)

HSP 1 Score: 62.4 bits (150), Expect = 1.570e-6
Identity = 50/166 (30.12%), Postives = 84/166 (50.60%), Query Frame = 1 
Query:   31 GSKLDTISKLLVEHKGRCDRSRGRFSALLIVSTRDLARTTPETLELMPSLQ--PFLRAEHVLVSSEKISFMRRASLDRLGTDLSQTNLVVSTTACSEGLEVPDCGLVVCA----SGTALAELRGRLNFGKNCKLVGLSRRCEEAPGERFRTLCQRDSTMLGAIETI 510
            GS ++ I +L+ +H    D     FSAL+ VSTR LA      +EL+  +   PF++AE ++  SE     ++  L +    +   N+VVST+ C EG+++P C LV+C     S  +  ++RGR+   ++ + + + R   E        L  R+  M  AI+ I
Sbjct:  477 GSVVNKIEELVTQHY---DADPKGFSALIFVSTRGLA------IELVKHISRIPFIKAEAMVGISEMTLAQQKTVLSKFRDQV--INVVVSTSVCGEGVDIPACCLVICTCLPNSMISFVQIRGRIRSNESARYLSMVR---ERRDMHVEGLVLREDNMNEAIQQI 628
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig102.262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LU32_ECTSI5.910e-2863.39DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A0H5R4I3_9EUKA1.570e-630.12Uncharacterized protein n=1 Tax=Spongospora subter... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig102contigF-serratus_M_contig102:137762..141066 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.4
Seed ortholog evalue2.2e-24
Seed eggNOG ortholog2880.D8LU32
KEGG koko:K11592
KEGG Pathwayko05206,map05206
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ribonuclease III activity
EggNOG OGsCOG0571@1,KOG0701@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Exons3
Model size1598
Cds size681
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig102.262.1prot_F-serratus_M_contig102.262.1Fucus serratus malepolypeptideF-serratus_M_contig102 139688..141066 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928819.5203357-UTR-F-serratus_M_contig102:137761..1381251622928819.5203357-UTR-F-serratus_M_contig102:137761..138125Fucus serratus maleUTRF-serratus_M_contig102 137762..138125 -
1690962586.8375561-UTR-F-serratus_M_contig102:137761..1381251690962586.8375561-UTR-F-serratus_M_contig102:137761..138125Fucus serratus maleUTRF-serratus_M_contig102 137762..138125 -
1622928819.5398722-UTR-F-serratus_M_contig102:139135..1396871622928819.5398722-UTR-F-serratus_M_contig102:139135..139687Fucus serratus maleUTRF-serratus_M_contig102 139136..139687 -
1690962586.849528-UTR-F-serratus_M_contig102:139135..1396871690962586.849528-UTR-F-serratus_M_contig102:139135..139687Fucus serratus maleUTRF-serratus_M_contig102 139136..139687 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928819.5542054-CDS-F-serratus_M_contig102:139687..1399581622928819.5542054-CDS-F-serratus_M_contig102:139687..139958Fucus serratus maleCDSF-serratus_M_contig102 139688..139958 -
1690962586.857979-CDS-F-serratus_M_contig102:139687..1399581690962586.857979-CDS-F-serratus_M_contig102:139687..139958Fucus serratus maleCDSF-serratus_M_contig102 139688..139958 -
1622928819.5684586-CDS-F-serratus_M_contig102:140656..1410661622928819.5684586-CDS-F-serratus_M_contig102:140656..141066Fucus serratus maleCDSF-serratus_M_contig102 140657..141066 -
1690962586.8662956-CDS-F-serratus_M_contig102:140656..1410661690962586.8662956-CDS-F-serratus_M_contig102:140656..141066Fucus serratus maleCDSF-serratus_M_contig102 140657..141066 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig102.262.1

>prot_F-serratus_M_contig102.262.1 ID=prot_F-serratus_M_contig102.262.1|Name=mRNA_F-serratus_M_contig102.262.1|organism=Fucus serratus male|type=polypeptide|length=227bp
VVGSKVTGALGSKLDTISKLLVEHKGRCDRSRGRFSALLIVSTRDLARTT
PETLELMPSLQPFLRAEHVLVSSEKISFMRRASLDRLGTDLSQTNLVVST
TACSEGLEVPDCGLVVCASGTALAELRGRLNFGKNCKLVGLSRRCEEAPG
ERFRTLCQRDSTMLGAIETIIGDVSATEVSAASVTSTHVAPPNTQLRFLG
RTPPHGVSWYRCRHRRSLRWRWLWWR*
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mRNA from alignment at F-serratus_M_contig102:137762..141066-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig102.262.1 ID=mRNA_F-serratus_M_contig102.262.1|Name=mRNA_F-serratus_M_contig102.262.1|organism=Fucus serratus male|type=mRNA|length=3305bp|location=Sequence derived from alignment at F-serratus_M_contig102:137762..141066- (Fucus serratus male)
GTAGTGGGCAGCAAGGTCACTGGAGCGCTGGGCTCAAAGCTGGACACGAT
CTCGAAACTGTTGGTAGAGCATAAGGGTCGGTGCGACCGGTCCCGTGGTA
GATTTTCAGCGCTATTGATCGTTTCCACACGCGACCTGGCCAGGACAACT
CCCGAAACACTTGAGCTGATGCCCTCGCTGCAACCGTTTCTGAGGGCAGA
GCATGTCCTGGTATCGTCGGAAAAGATCAGTTTTATGCGGCGGGCTTCGC
TCGATAGGCTTGGTACAGACCTAAGCCAGACAAACCTGGTCGTTTCGACA
ACCGCTTGCAGCGAGGGTCTAGAGGTTCCCGACTGCGGGCTGGTGGTCTG
CGCCAGCGGAACTGCGCTCGCGGAGCTCAGAGGACGCCTTAATTTTGGTA
AAAACTGCAAGTGAGTGAGGGGTTAAGAAGAGACTTGGCGACGGGCTGCA
TATGTAGCGTGGCCCTAGGTCGCTTGTGTGGGCTGCCGTAGAGGAACATA
TTGTGCTCGAGTGTGCCTCGAAGCGTCCATCCGGTTGTATATCCAGTAAT
TTGGTAACATCATTTTTGTGGGTCGCTTCAGTTCGCCACGGCTCCCGTTC
GGCTTGAAATATATAGAAACGCAAAGCCAAGTATCTGGAGAAGAGGATGG
GCATGCCTCTTCTTGTACTTGAATATGTCTTAGATATGTTCTCACTCCTC
ACTGCTGACGACGCCAATTGCTCATGACACCATTGGTAGCAAGAGGAGCA
GAGCATCCTCAAAAGCAGTGCAAGTAGCGTGTTGCTATTTTTACGAGAAA
TCAAGAGGAGTTCGACTTCTGGTTTGCGCATTTTCCCCGTTGCGTAGACA
AGAGACTTACTGATTTGTGTGTTTTTCATTGTACCATGTCACGCGTGACG
AATCGCCCATGAATCACCTTCGTTCAGCCAGAAAGCTGGCGCTGTCAATG
TTCGCGTCCATTCCTTTATTTCGTCGATTCATATTAATAATTCCTCGGAC
AACGAAGGAATACACCAAAATAGTATTAGTGCCTTACCTACCCTGACAGT
GCTAGTGACGCTAACATGATACGTTGGTGACGGTTTGCTTTGATGATACT
GATGACAGGTTGGTGGGTCTGAGCCGACGCTGTGAAGAGGCCCCTGGTGA
ACGCTTTCGAACCCTCTGCCAGCGCGACAGTACGATGTTGGGGGCCATCG
AGACCATCATTGGAGACGTTTCGGCTACCGAAGTCTCCGCCGCTTCTGTG
ACCTCTACCCATGTCGCCCCTCCGAACACCCAACTTCGCTTCCTAGGACG
AACCCCACCCCACGGGGTCTCCTGGTACCGCTGCAGGCACCGCCGATCAC
TTAGGTGGCGGTGGCTTTGGTGGCGATAGCCCTGGTGGGTCTGGTAGCGA
TGGTGACGGAGATGGCGGCGGTGGCGGAGTCGCTTTGGTTAAGATACCTA
ACTCAGGGATCTCAGCGAAGGTGGCGGTACAAGAATCGACGCAAGCCTCG
AAATCAGCGTCAGAGCCAGCATCACCGTCTTCTTCAGTGCCATCCTCGGC
GTCAGCACGAGCTCCAGTCTCAACGTCAGAATCGGCGGCGGCGGTAGCGA
CCGCGGCGACCAGCGTCACCCCGACAGAGAGCCCAGCAGACGCTGCGGCG
GCACGTGCGATCGTTAAGCCCCCACGAGCCGCGGCCATGATTGTGCCGGA
TAAGCCTCCCAGCGAGACGTCCAATGACAACGGCGACGGTGATGGTGCCG
AAAAGGGTGGAACTCAAAAGGGTGGGGCAGCGGCGGCAGCTACGGATTCC
GAGGGAGGGGCGAAGGGGTGGAAAAAGTCGCTGCCCGAACCCCTTGGCGC
CGAAGCGAAGAAATACGCCGCCACTTACCTGGCGACATGCCTACGCCAGA
CACTGCAGAAGCAACCCGATGAGAGGGCGAGGTGAGTCTAGCACTATTAA
TAGCAGTATAACAATAGCAGTATAGCACTATAATAGCAGTTTGTGTTGTT
TGTTGCCATCCCATTTATTCTGGACGCCAGACTACACCTTTCGGTTAGTA
TGTTAATACCGTATGTGGACAGGACGCACCGGCCGGGGTCGCACAGGAGG
AAGGCCATACCTTCCTTCTGCGGTGCTTGCCTTCATTTTTTTATCGCGAG
AAGGATTCAGCCGTCCATTTCCCCTGTCGACCGTGAAGTCGAATGTTGTA
TCCACGATATAATCGTTCTCCACTTGTTGGGCATAATGTGAGAAAATCCC
AGTTCGCGTAACTGTGCCGAGATTCGGACTCACATTCTAACGTTAGAAAA
TTTCGAGGTTACCGACTGAACCACGGGGCGACCAATAGCTTGATATGATC
TTATTAGTACAGGAATGGGTGGGGAACATCGATGTACAGTACGGAGTATA
TATTTTAGTGTAAAAGCGCAGAATTTTTCTTGGGCCTACTGTATTGTTGG
GAAGACTGGTGTTTCTGAGAGCACTGGACAGCACACAATATTACGTGTGA
AAACCTAATCCACCGTTCTACATGGCTTACTTGACCTACTTGAATCAATA
TGTGTTTTTACAGAACCTGGATGGTTTTTACATTGTTTTTCGGGGATGGA
TTTGATTACATCATACTAGAAAAATTTAATTGAGAATCGAATGAAATGGT
AATGAAGCATCTTGTACAGAGTATTTTTCGGAAATAATTTAATATTACTG
TATAGCAGTATGCCTAAATCTACTGAATGAAACTATTAATAGTTATGAAG
CACCATGTATATATCAATTATTTATCGTCGGAAAATAATGGAGTACTTTA
AATAAAACGCTTTTGCGTGTTATCTACCATTCGAACTTAAAAAAAAAAAA
TGATTGAAATTGGTCTAAAAAATGTATATATACATGGCGGTTGCACGATG
TTCGTCCTTTGGTTGGTATCTTTTGGTTCTCGCCTATTCAGGTCCTCGAT
CAACACCACAGTGCAGCTGGCACACGCCATCAAGCCAGTGTTGGAGTACG
ACGAAAGGCCATTGTCCTTGTCGGGGCAGGGGCAGGCGCAAGACGCGTTT
GAGGCGAGGTGCTTCGTATGGTCGAGGTTGGAAGAGCTGAAAGGCCTCAT
CGTCGTGAAGGAGGCCAAGGGAGTTTCCATCAAGGCCGCTCGAGAGCGTG
CGGCGCAGAAGATTATGCAATACCTGCTGCAAAGAGAGGGCACGAAGGAG
GAGACGCCTTCGAGCTCACACGTCTCCCCTTCGTCATCGAGAAAGCCGGA
CGCCGTGAAACCCTAGAAACCCACACCAACGCCTCCCCTTCGCCATCGAG
ACCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig102:137762..141066-

>mRNA_F-serratus_M_contig102.262.1 ID=mRNA_F-serratus_M_contig102.262.1|Name=mRNA_F-serratus_M_contig102.262.1|organism=Fucus serratus male|type=CDS|length=1362bp|location=Sequence derived from alignment at F-serratus_M_contig102:137762..141066- (Fucus serratus male)
GTAGTGGGCAGCAAGGTCACTGGAGCGCTGGGCTCAAAGCTGGACACGAT
CTCGAAACTGTTGGTAGAGCATAAGGGTCGGTGCGACCGGTCCCGTGGTA
GATTTTCAGCGCTATTGATCGTTTCCACACGCGACCTGGCCAGGACAACT
CCCGAAACACTTGAGCTGATGCCCTCGCTGCAACCGTTTCTGAGGGCAGA
GCATGTCCTGGTATCGTCGGAAAAGATCAGTTTTATGCGGCGGGCTTCGC
TCGATAGGCTTGGTACAGACCTAAGCCAGACAAACCTGGTCGTTTCGACA
ACCGCTTGCAGCGAGGGTCTAGAGGTTCCCGACTGCGGGCTGGTGGTCTG
CGCCAGCGGAACTGCGCTCGCGGAGCTCAGAGGACGCCTTAATTTTGGTA
AAAACTGCAAGTAGTGGGCAGCAAGGTCACTGGAGCGCTGGGCTCAAAGC
TGGACACGATCTCGAAACTGTTGGTAGAGCATAAGGGTCGGTGCGACCGG
TCCCGTGGTAGATTTTCAGCGCTATTGATCGTTTCCACACGCGACCTGGC
CAGGACAACTCCCGAAACACTTGAGCTGATGCCCTCGCTGCAACCGTTTC
TGAGGGCAGAGCATGTCCTGGTATCGTCGGAAAAGATCAGTTTTATGCGG
CGGGCTTCGCTCGATAGGCTTGGTACAGACCTAAGCCAGACAAACCTGGT
CGTTTCGACAACCGCTTGCAGCGAGGGTCTAGAGGTTCCCGACTGCGGGC
TGGTGGTCTGCGCCAGCGGAACTGCGCTCGCGGAGCTCAGAGGACGCCTT
AATTTTGGTAAAAACTGCAAGTTGGTGGGTCTGAGCCGACGCTGTGAAGA
GGCCCCTGGTGAACGCTTTCGAACCCTCTGCCAGCGCGACAGTACGATGT
TGGGGGCCATCGAGACCATCATTGGAGACGTTTCGGCTACCGAAGTCTCC
GCCGCTTCTGTGACCTCTACCCATGTCGCCCCTCCGAACACCCAACTTCG
CTTCCTAGGACGAACCCCACCCCACGGGGTCTCCTGGTACCGCTGCAGGC
ACCGCCGATCACTTAGGTGGCGGTGGCTTTGGTGGCGATAGGTTGGTGGG
TCTGAGCCGACGCTGTGAAGAGGCCCCTGGTGAACGCTTTCGAACCCTCT
GCCAGCGCGACAGTACGATGTTGGGGGCCATCGAGACCATCATTGGAGAC
GTTTCGGCTACCGAAGTCTCCGCCGCTTCTGTGACCTCTACCCATGTCGC
CCCTCCGAACACCCAACTTCGCTTCCTAGGACGAACCCCACCCCACGGGG
TCTCCTGGTACCGCTGCAGGCACCGCCGATCACTTAGGTGGCGGTGGCTT
TGGTGGCGATAG
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