mRNA_F-serratus_M_contig102.261.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig102.261.1
Unique NamemRNA_F-serratus_M_contig102.261.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig102.261.1 vs. uniprot
Match: A0A848LCV5_9DELT (Tandem-95 repeat protein n=2 Tax=Pyxidicoccus fallax TaxID=394095 RepID=A0A848LCV5_9DELT)

HSP 1 Score: 76.3 bits (186), Expect = 4.850e-13
Identity = 43/107 (40.19%), Postives = 60/107 (56.07%), Query Frame = 1 
Query:  121 SIKCFGENGYGELGIGST----DDVGKL--SCPPTDMGVNLTAVXXXXXXXXXXXXXXXXXXCAVLDGGSIKCWGLGSSGQLGQGNDENIGDEPGVLADTAP-IDLG 420
            S+KC+G+N YG+LG+G T    DD G++  + PP D+G   TA                   CA+LD G++KCWG   SG LG G+ E  GD+PG + D  P ++LG
Sbjct:  665 SVKCWGDNQYGQLGLGDTRSRGDDPGEMGDALPPVDLGTGRTA---------KTLAAGGNYVCAILDDGTVKCWGDNRSGTLGLGDTEARGDDPGEMGDALPLVELG 762
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BLAST of mRNA_F-serratus_M_contig102.261.1 vs. uniprot
Match: A0A3T0RSR7_9PROT (Uncharacterized protein n=1 Tax=Bdellovibrio sp. qaytius TaxID=1916293 RepID=A0A3T0RSR7_9PROT)

HSP 1 Score: 76.3 bits (186), Expect = 4.850e-13
Identity = 42/105 (40.00%), Postives = 60/105 (57.14%), Query Frame = 1 
Query:  121 SIKCFGENGYGELGIGSTDDVGKLSCPPTDMGVNLTAVXXXXXXXXXXXXXXXXXXCAVLDGGSIKCWGLGSSGQLGQGNDENIGDEPGVLADTAP-IDLGAEIK 432
            ++KC+G N  G+LG G  + +GK +   ++MG NLTA+                  CA+LD  S+KCWG  +SGQLGQG+  ++GD  G + D+ P IDLG   K
Sbjct:  237 TVKCWGLNSSGQLGQGHANSLGKGA---SEMGNNLTAISLGASRTAVAIAIGNTHSCALLDNASVKCWGGNTSGQLGQGHTNSLGDASGEMGDSLPVIDLGTNRK 338
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BLAST of mRNA_F-serratus_M_contig102.261.1 vs. uniprot
Match: A0A812U8C8_9DINO (UVR8 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812U8C8_9DINO)

HSP 1 Score: 76.3 bits (186), Expect = 5.330e-13
Identity = 43/99 (43.43%), Postives = 54/99 (54.55%), Query Frame = 1 
Query:  124 IKCFGENGYGELGIGSTDDVGKLSCPPTDMGVNLTAVXXXXXXXXXXXXXXXXXXCAVLDGGSIKCWGLGSSGQLGQGNDENIGDEPGVLADTAPIDLG 420
            +KCFG N  G+LG G+   V  L   P +MG NL  V                  CAVL GGS+ CWG+   GQLGQG+ ++IGD+PG +    PIDLG
Sbjct:  210 VKCFGYNDQGQLGQGT---VASLGDDPGEMGSNLPPVDLNGAQAIQVACHRHS--CAVLQGGSLVCWGVNDYGQLGQGHRDSIGDDPGEMGSQQPIDLG 303
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BLAST of mRNA_F-serratus_M_contig102.261.1 vs. uniprot
Match: A0A812YES9_9DINO (HERC2 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812YES9_9DINO)

HSP 1 Score: 75.9 bits (185), Expect = 6.250e-13
Identity = 39/99 (39.39%), Postives = 53/99 (53.54%), Query Frame = 1 
Query:  121 SIKCFGENGYGELGIGSTDDVGKLSCPPTDMGVNLTAVXXXXXXXXXXXXXXXXXXCAVLDGGSIKCWGLGSSGQLGQGNDENIGDEPGVLADTAPIDL 417
            S+KC+G+N +G+LG G T  +G     P +MG NL  V                  CA+LD  S+KCWG G+ GQLG G   ++GDEP  + D  P+ L
Sbjct:  308 SVKCWGKNDFGQLGQGHTRSIGD---EPGEMGENLQPVDLGSNRHALAVAAGALHSCAILDDYSVKCWGYGAFGQLGNGGTASLGDEPLEMGDALPVSL 403
[Close]
BLAST of mRNA_F-serratus_M_contig102.261.1 vs. uniprot
Match: A0A3D8MT76_9DELT (Non-specific serine/threonine protein kinase n=3 Tax=Bradymonadales TaxID=1779134 RepID=A0A3D8MT76_9DELT)

HSP 1 Score: 75.9 bits (185), Expect = 6.730e-13
Identity = 41/103 (39.81%), Postives = 57/103 (55.34%), Query Frame = 1 
Query:  121 SIKCFGENGYGELGIGSTDDVGKLSCPPTDMGVNLTAVXXXXXXXXXXXXXXXXXXCAVLDGGSIKCWGLGSSGQLGQGNDENIGDEPGVLADTAPIDLGAEI 429
            ++KC+G N YG+LG+G T  +GK   P     VN+ A                   CA+L+GG +KCWG   +GQLGQG+ +N+GD     AD  PID+G E+
Sbjct:  767 ALKCWGNNRYGQLGLGHTHHLGKAEVPANINPVNVGA-------DVLDISAGKFHTCALLEGGQLKCWGRNQAGQLGQGHTDNLGDNEHP-ADIKPIDVGDEV 861
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig102.261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A848LCV5_9DELT4.850e-1340.19Tandem-95 repeat protein n=2 Tax=Pyxidicoccus fall... [more]
A0A3T0RSR7_9PROT4.850e-1340.00Uncharacterized protein n=1 Tax=Bdellovibrio sp. q... [more]
A0A812U8C8_9DINO5.330e-1343.43UVR8 protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
A0A812YES9_9DINO6.250e-1339.39HERC2 protein n=1 Tax=Symbiodinium sp. CCMP2592 Ta... [more]
A0A3D8MT76_9DELT6.730e-1339.81Non-specific serine/threonine protein kinase n=3 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig102contigF-serratus_M_contig102:103599..106362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue6.4e-13
Seed eggNOG ortholog2880.D7FS37
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsCOG5021@1,KOG0941@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size509
Cds size507
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig102.261.1prot_F-serratus_M_contig102.261.1Fucus serratus malepolypeptideF-serratus_M_contig102 103599..106362 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928819.2255425-CDS-F-serratus_M_contig102:103598..1037271622928819.2255425-CDS-F-serratus_M_contig102:103598..103727Fucus serratus maleCDSF-serratus_M_contig102 103599..103727 +
1690962586.7351098-CDS-F-serratus_M_contig102:103598..1037271690962586.7351098-CDS-F-serratus_M_contig102:103598..103727Fucus serratus maleCDSF-serratus_M_contig102 103599..103727 +
1622928819.2452433-CDS-F-serratus_M_contig102:105164..1053581622928819.2452433-CDS-F-serratus_M_contig102:105164..105358Fucus serratus maleCDSF-serratus_M_contig102 105165..105358 +
1690962586.7465436-CDS-F-serratus_M_contig102:105164..1053581690962586.7465436-CDS-F-serratus_M_contig102:105164..105358Fucus serratus maleCDSF-serratus_M_contig102 105165..105358 +
1622928819.258126-CDS-F-serratus_M_contig102:106178..1063621622928819.258126-CDS-F-serratus_M_contig102:106178..106362Fucus serratus maleCDSF-serratus_M_contig102 106179..106362 +
1690962586.7540703-CDS-F-serratus_M_contig102:106178..1063621690962586.7540703-CDS-F-serratus_M_contig102:106178..106362Fucus serratus maleCDSF-serratus_M_contig102 106179..106362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig102.261.1

>prot_F-serratus_M_contig102.261.1 ID=prot_F-serratus_M_contig102.261.1|Name=mRNA_F-serratus_M_contig102.261.1|organism=Fucus serratus male|type=polypeptide|length=169bp
TPHCLGETSLPSSSVRTMCPPRSISAPRTHAHFYNRGRFRSIKCFGENGY
GELGIGSTDDVGKLSCPPTDMGVNLTAVDLGLGGTASDMTAGGSSSCAVL
DGGSIKCWGLGSSGQLGQGNDENIGDEPGVLADTAPIDLGAEIKTTTMSP
TPSPLMTTAIPSSQPTSVP
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mRNA from alignment at F-serratus_M_contig102:103599..106362+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig102.261.1 ID=mRNA_F-serratus_M_contig102.261.1|Name=mRNA_F-serratus_M_contig102.261.1|organism=Fucus serratus male|type=mRNA|length=2764bp|location=Sequence derived from alignment at F-serratus_M_contig102:103599..106362+ (Fucus serratus male)
ACGCCGCATTGCTTGGGGGAAACCTCACTACCGTCCAGTTCGGTGCGGAC
GATGTGCCCTCCTCGCTCGATCTCGGCGCCTCGCACTCATGCGCACTTCT
ATAATAGGGGACGGTTCCGTTCCATCAAGGTGCGTGCTGAAATGCTGAAA
TGAAGGTTTCGTGCCCCCCCCCCCCCCCCCCCCCGTCACTCATGTTTTAT
CTTAACATGTACCGTACTATTATTAGGTATGATATGCAGATTCAAGATTC
AATGCTGTTGGCTATCGCGGCGGGGACCAAGTTGGTCAAGCGAACGAACG
GTGATAATGTCACGAACGCTCTGTTGAGAGTTATATCGTTATATCTGTTG
CCGACAAAAGAGCACGACACGCTCGGACTCTAAAAATATCAATATAATTT
GAAAGGCAGCATTCATTATTCATTCCTACCGTAGGTTGGGTTAGGTTGGG
TTAGGTTATTAGGTTGGGTTAGGTACCAGAAGCGTGGAAAAGGCGCAGAG
CAGAAAATAAACATAACACCATTATCAATACCTGGTATAGTATTAATAGT
AGTATTACTGCTGTCATTATATGAATATGAATAGAAGCATACCTTGGACC
TGCTGCGGTATCGTACGTCGTCTGGCATTCCCGGTATCGCCTTATTGACC
AGCCACGGTAGAAATCTAATCTAATCTAATCTTGGAAGAAAGGAAGGAAG
GAAGGAAGGTGTACGCTGACATTCCTTGTCGAGAGCCGCAAAGGAGCTGG
ACAATCTAAGCGCGTATCTTGCCTTGTAGGCTACAAACAGCCAGCGAGAA
CAGATCATCTCCTTGTTCCTTGTTGGCGCCCGATACCGACGGCGATAGGC
GATACTCACAGCCCCTTTTGTACAAAAACTGTCTCTTAAAATGTATATGC
CGTCCCTTTGCGCACCCAATATCAAGTAAGGGAGGCTTCAAACATCCGTA
CAAGTAATACGAAACCAAAAATATAGCAACTTCCCCGTGAAAAATATGTT
TTGACGTAGGGGATCCACGCTTTCCAATCACCGCACGGAGGGGTTGGGTT
GCCATCACTTTTTCTAACCTTGATTGAAACTGCTGGTGTGTACGAAGCAT
ATCCTAACAAGTTGCCGCTCTAACTTTGTTGAAGGACTTGTAATATTTTG
GGTGGCCAGATGGCATTGTCCCTCAATTTACGCTTTACAGCTTTGCGGAT
TGTCGCTCCCGGCTTCCTGTGTCAGTGTGTAAAACGGTAACGGTAACAAT
ATTGTGGGCGCGGAGAAGATCGCGCGGTCCTCGACAACGGATTCGTTGGC
AGTCAATCCTCAGCAGACTCAGACATTGGCTTTTCAAACAGCAAATGTGT
TTCGTCGCTATCGTACGAAACACCACACCCACCATCCACAGTTTTCATTT
TTGCTTAAAAACAAATGTACAATACAATAGCCGTATGGTATACCTTCACC
TACCTACCTATTAATACCAGAATGCTGTTTATTTCCTCCTTTCCTTTCCT
TTCCTTTCCTTTCCTTTCCTTTCCCCTCATGATGATACTGCTGTCCTTCC
GCCGGCCGCCGTTCAGTGTTTCGGAGAGAACGGGTATGGAGAGCTCGGCA
TCGGCTCTACTGACGACGTGGGTAAGCTAAGCTGCCCACCCACCGACATG
GGTGTGAACCTCACCGCAGTGGATTTGGGTTTGGGTGGTACGGCCTCGGA
CATGACTGCCGGTGGATCATCTTCCTGCGCCGTTCTGGACGGCGGCTCCA
TCAAGTGTTGGTGAGGGCGCACGTTATTAATAGTCTCGCTATGATTATTA
TAATAGTAGTGATACTGATGTGTACAGCACAATGCACTCGATTGTGTCTC
TGGCGGATTTCTTCTCCCATCGTGAGCTCGCGGTCATTGTCATTATTTCT
TTAAGGACGTCTAATACTGTACTGTAGACTAGAACAACAGAAATCCAATC
CCGCAGCCCGTCGCCCGAGTGGTCTATTAAATAGGAGTAGTAGGTAACCT
GCACACCTGCTATTAATAGTGCGGAAGTCGTGAGTTCGATTCTTACCAAG
TAGAAATTGTGTTCTTTCTTTCGTAACGGAAAGCGTGGGAACGTGGGCAA
GTAAAATTCAACCATTGGTTGTCGAGTTGTAAGATTGCTGAACTTGCATC
GCGATAAAAAATTGTAAGGAGTGAACCGGGGAGAGATGGGAAGATCCTTT
GTGACCACAGGCAGGACGGTAATTGTGAGGTCCATCGATTGGCTATAAGT
GAGGTTCAAAAGGGGGGAGAAAAAAAGTGCGTATTATAAGGAGGTTTGGC
GCGTGCCAGTTTCTCGTGCGCCACAACGTAACAGCAAAGAGTGTTTTCAC
AAAAGCAACATACAGTTTAGTGTTGCATTTAGGTAGGGTAGCTCTTGTCT
GCAGGAGGATCTTCCTTTTCAGTTCCACATAACATACTGTACGCAACCTA
CACACATGGTTGATTGGGTTACCCACATCCACACCGTAGAATGTATGGTC
CGCCTAACGTCACCAACCCTCCCTCCCTCTCTCCCTcCCTCCCTCCCTCC
CTCCCTTGTCACGTTATTATTTGATAATAGGGGTTTAGGAAGCAGTGGGC
AGCTTGGTCAGGGCAACGACGAAAACATCGGTGATGAGCCTGGGGTTCTC
GCTGACACGGCGCCGATTGACCTCGGCGCAGAGATCAAAACCACTACGAT
GTCACCGACACCTTCCCCTCTGATGACCACCGCCATTCCGTCTTCCCAGC
CAACAAGCGTGCCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig102:103599..106362+

>mRNA_F-serratus_M_contig102.261.1 ID=mRNA_F-serratus_M_contig102.261.1|Name=mRNA_F-serratus_M_contig102.261.1|organism=Fucus serratus male|type=CDS|length=1014bp|location=Sequence derived from alignment at F-serratus_M_contig102:103599..106362+ (Fucus serratus male)
ACGCCGCATTGCTTGGGGGAAACCTCACTACCGTCCAGTTCGGTGCGGAC
GATGTGCCCTCCTCGCTCGATCTCGGCGCCTCGCACTCATGCGCACTTCT
ATAATAGGGGACGGTTCCGTTCCATCAAGACGCCGCATTGCTTGGGGGAA
ACCTCACTACCGTCCAGTTCGGTGCGGACGATGTGCCCTCCTCGCTCGAT
CTCGGCGCCTCGCACTCATGCGCACTTCTATAATAGGGGACGGTTCCGTT
CCATCAAGTGTTTCGGAGAGAACGGGTATGGAGAGCTCGGCATCGGCTCT
ACTGACGACGTGGGTAAGCTAAGCTGCCCACCCACCGACATGGGTGTGAA
CCTCACCGCAGTGGATTTGGGTTTGGGTGGTACGGCCTCGGACATGACTG
CCGGTGGATCATCTTCCTGCGCCGTTCTGGACGGCGGCTCCATCAAGTGT
TGTGTTTCGGAGAGAACGGGTATGGAGAGCTCGGCATCGGCTCTACTGAC
GACGTGGGTAAGCTAAGCTGCCCACCCACCGACATGGGTGTGAACCTCAC
CGCAGTGGATTTGGGTTTGGGTGGTACGGCCTCGGACATGACTGCCGGTG
GATCATCTTCCTGCGCCGTTCTGGACGGCGGCTCCATCAAGTGTTGGGGT
TTAGGAAGCAGTGGGCAGCTTGGTCAGGGCAACGACGAAAACATCGGTGA
TGAGCCTGGGGTTCTCGCTGACACGGCGCCGATTGACCTCGGCGCAGAGA
TCAAAACCACTACGATGTCACCGACACCTTCCCCTCTGATGACCACCGCC
ATTCCGTCTTCCCAGCCAACAAGCGTGCCGGGGTTTAGGAAGCAGTGGGC
AGCTTGGTCAGGGCAACGACGAAAACATCGGTGATGAGCCTGGGGTTCTC
GCTGACACGGCGCCGATTGACCTCGGCGCAGAGATCAAAACCACTACGAT
GTCACCGACACCTTCCCCTCTGATGACCACCGCCATTCCGTCTTCCCAGC
CAACAAGCGTGCCG
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