mRNA_F-serratus_M_contig1019.257.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig1019.257.1
Unique Name	mRNA_F-serratus_M_contig1019.257.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig1019.257.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig1019.257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig1019	contig	F-serratus_M_contig1019:217401..221688 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	62.4
Seed ortholog evalue	9.9e-08
Seed eggNOG ortholog	2880.D8LE22
Hectar predicted targeting category	other localisation
EggNOG free text desc.	Methyltransferase domain
EggNOG OGs	2E18F@1,2S8KF@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	3
Model size	725
Cds size	213
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig1019.257.1	prot_F-serratus_M_contig1019.257.1	Fucus serratus male	polypeptide	F-serratus_M_contig1019 217468..221243 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928818.3080764-UTR-F-serratus_M_contig1019:217400..217467	1622928818.3080764-UTR-F-serratus_M_contig1019:217400..217467	Fucus serratus male	UTR	F-serratus_M_contig1019 217401..217467 +
1690962586.3338425-UTR-F-serratus_M_contig1019:217400..217467	1690962586.3338425-UTR-F-serratus_M_contig1019:217400..217467	Fucus serratus male	UTR	F-serratus_M_contig1019 217401..217467 +
1622928818.3830502-UTR-F-serratus_M_contig1019:221243..221688	1622928818.3830502-UTR-F-serratus_M_contig1019:221243..221688	Fucus serratus male	UTR	F-serratus_M_contig1019 221244..221688 +
1690962586.377106-UTR-F-serratus_M_contig1019:221243..221688	1690962586.377106-UTR-F-serratus_M_contig1019:221243..221688	Fucus serratus male	UTR	F-serratus_M_contig1019 221244..221688 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928818.326308-CDS-F-serratus_M_contig1019:217467..217524	1622928818.326308-CDS-F-serratus_M_contig1019:217467..217524	Fucus serratus male	CDS	F-serratus_M_contig1019 217468..217524 +
1690962586.3494947-CDS-F-serratus_M_contig1019:217467..217524	1690962586.3494947-CDS-F-serratus_M_contig1019:217467..217524	Fucus serratus male	CDS	F-serratus_M_contig1019 217468..217524 +
1622928818.3408387-CDS-F-serratus_M_contig1019:220869..221019	1622928818.3408387-CDS-F-serratus_M_contig1019:220869..221019	Fucus serratus male	CDS	F-serratus_M_contig1019 220870..221019 +
1690962586.3594637-CDS-F-serratus_M_contig1019:220869..221019	1690962586.3594637-CDS-F-serratus_M_contig1019:220869..221019	Fucus serratus male	CDS	F-serratus_M_contig1019 220870..221019 +
1622928818.3546798-CDS-F-serratus_M_contig1019:221237..221243	1622928818.3546798-CDS-F-serratus_M_contig1019:221237..221243	Fucus serratus male	CDS	F-serratus_M_contig1019 221238..221243 +
1690962586.3681378-CDS-F-serratus_M_contig1019:221237..221243	1690962586.3681378-CDS-F-serratus_M_contig1019:221237..221243	Fucus serratus male	CDS	F-serratus_M_contig1019 221238..221243 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig1019:217401..221688+
coding sequence from alignment at F-serratus_M_contig1019:217401..221688+

protein sequence of mRNA_F-serratus_M_contig1019.257.1

>prot_F-serratus_M_contig1019.257.1 ID=prot_F-serratus_M_contig1019.257.1|Name=mRNA_F-serratus_M_contig1019.257.1|organism=Fucus serratus male|type=polypeptide|length=71bp
MELVEFEDQTTNLIVNYLNMVDRIASLRGTLADIDDSMLDARSARCSSYA
DAGKLGCMIWGTSVFRKNVK*

mRNA from alignment at F-serratus_M_contig1019:217401..221688+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig1019.257.1 ID=mRNA_F-serratus_M_contig1019.257.1|Name=mRNA_F-serratus_M_contig1019.257.1|organism=Fucus serratus male|type=mRNA|length=4288bp|location=Sequence derived from alignment at F-serratus_M_contig1019:217401..221688+ (Fucus serratus male)
CGAAGACATAAAAATTACCACACTGGGCAGCCCCGAGACATTCGAAGCAG
CCGGCAAACGGTACGGCATGGAGCTTGTCGAGTTCGAAGATCAAACAACC
AACCTGATCGTTAATTACCTGAACGTGAGCAAGCAATCGATATCATCATG
AAGCCATGATGGGCTATTCGAAGAATGGTTGCTCAGCCCGAAGGATCCTT
GCAAGAGGAGCCACGTCCCGATCTCGCTGTTCGTCAATGAAATATGGTAG
ATTAAACCTCGAACTGTCTCGTTGCCCATGAACAGCAAAGATACAGGGAC
GCTTTTTCAACATGAAACGATATTGTAGCCATAATGTTTATTAATCGGCG
CAGCCTTGACAGGGAAAGCACAATCCCGCCTTGGAACATCGTCCGATGGG
AACGAAGGAGACAAGGGAGTAAGATTATAGCCCATCGGAGCCCGCATCAA
GCAGTAAACGTCCAAACATATTATAATAGTAAAACTGTTACTCATCGTGT
AATCAACGACACGTCCAGACGATAAAGAACTCATAAGTTATCCATTGATC
CAACAAATTTCTCAATGACGTGCATGGTATTAAAACGGTTGCCATATCAT
TTTACCGCACTTTTCCCCTGAAAAACACTGAACATTGATAAGATTTCATG
CTAAGACGAAAATAACATTATTCCCAATTCAATCGATATTACGGAAATCT
GTCTTTCCCCCAAGAAGTCGTAAGAGATGTATCGCAAATAGGTACAAGGA
ACACAGCAGATCTTTCATGAAAAAAACATTTATTTTCGGTCCCTCCCCAA
TGAGATCAATTATCAGGATACTTTATATAATTCACTTATTTTGAACAAGT
CTTCTTTCGGCGACAAACAGAAATTGCGAAACACGTAGAACTACTCATAG
GCACTCAAACAAAAGCCACGACTCAGTTCTGACTTCTGCATCTCAGCAAA
ACTATTGCTCAATCATTGCCTAAAACAAAGGGTCCAAAGGGGCTTCAGGT
TTATGGTGGCGTGTTTAAAGGAGGAGTGAAATACCTTCGCAAACGGGTAG
ATAAAGATAGAGGTGGGCAACGTTGAGATTTTACCTGGGGTGACCGTGCC
ATGTTGATTACACGACCCAAGGGCTGCCAAAGCGCCCCCGTCGATACGAA
AGTCACAGAACCCTGAGAGTACTGCCCTAAAGATGTTATGCCTTTGTGTG
CAAATGCAAGGAGTTTTAGTCCGAGTAGAGCTGCTCCGGATGCGCTCGCG
GCTGGCGCTGTACTAACTCTCCCTAGAAAGTGCCACTCTTTATGTTGCGA
ACCTGCGTGTATGCGCCACGCAGCTTCTTTCTTTATTGTTTCCCTGTGCC
TCTCTGCGTCCTCTCTTTCCTTTTTTTCTTTCTTTTTAATCGTCGTTTTG
TTCTGTGTTTGTAATGTATGCCTTGGTTAGAGCTTTTTAGATGTTTCTCT
GATCGTTTCTTGTCCAGCAGACCACGTGCCTGATTGGAAAATATTATTGG
GTGTACTCGAGACCCGACCGTTTACATACAGCCGGTACTTTTAACATGCC
CACTCCATACCAATAGTGGGTGTGGGAAAGAGAGACGTATATTAAATGCT
TCATAGTGACCTGCTAAGGCAGCCCTCGTTTGGAACTACCTTGAGGTTTA
CCGACTCTGTGCCGGTGGACTCTCGGCAGTGAAGCCATCGGTACGCATTT
GCGTGGCCCGATAAACTTGGGACTGACCCGATGGCGTATGGCGGATTAAG
GACGCCGCCGCGGAACTCGGGAGAAATTCCGTAAGTAAGCATCAGATTCA
GCCTGAGTATAGAGATGAGCAGGCTGGCGCGGGACGGGACTGCCGAAACC
GTCTCGCGAGACCAAATTCTCAGGCACGAACGCGGACAGGGAAATTTTCA
TTTTCCCTGTTCAGCTGACCACGAACAGGATTGGCAACCTTATCCAGTTG
ATCCATACTCTTGCTATATTGTGACCATACATACACAAATATGCATACAT
ACATAAATACATACATACATACATGCATACATACATACATACATACATAC
ATACAATTGATAAATATACATACAATCATACATGTCGCGTCTGATCAGAG
GTTTTCGAAATAAGTTTCATTGATCCCCCCTTGGGAGGATCAATACGAGT
GGCATAGAATAACTAGGATGACAGGGCCGGATTGCGCGGTTATGTGCAAT
TTAATAAATATACATACATAATACATACAAATACATTTCGAAATAAGTTT
CATTGATTCCCCCTAGGGAGGATCAATGCGAGTGGCATAGAATGACTAGG
ATGACAGGGCCGGATTGCGCGGTTATGTGCAATTTAATAAATATACATAC
ATACATACATACATACATACATACATACATACATACATACATACATACAT
ACATACATCCTTTGTCGCGTCTGATCAGAGGTTTTCGTAATAAGTTTCAT
TGATCCCCCCTTGGGAGGATCAATACGAGTGGCATAGAATGACTAGGATG
ACAGGGCCGGATTGCGCGGTTATGTGCAATTTAATAAATATACATACATA
CATACATACATACATACATACATACACACATACATACATACATACATACA
TACATACATACATAAATACATACAAACATACATACATATATAAGTATACG
CAGGTACATAAATGCGGTTATGTTCAATGTAGTAACTCCCTGCGTCATAA
CACTACATACATGCAAACGTCCAGTGCACTCAAGAGCTGATGATAGCACA
ACGCCTAACAGACTAATATGTCTACAGGGTTACATGGATATGCATCGCAC
GTTGCTAGACCTACCATGAAGACTCCGAGCCTGTGCCGGTGGGTTGTCGG
CGGTGAACCCAATTGGTGTGAGATAATTAGCTCGAAAGTGACCTGTGGGC
GGTGGACGATATAGATACAAAAACATTTTTACGGAAAGCGAGAAAGTAAA
GAGGAGCCCGTTACCAGTTTCTGTCTGAGTTAAGAAAATGAGAGGTCATG
AGACCTTACTCTCGTGTGCAAAGAGATGCAGGGAAAGTTCTAACTCCCTG
TTCTGCTGAATGGGCTAGAGACGGTATTCCTTTGATTCGTAGTTCAATAC
TACTATTTTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTAATCTCACTT
ATAGCCGATGGACCTCTAACTATCATCCTGCCTTTGGTCACAAAGGATCT
TCCTATCTCTCCCCGGTTCACGCCTTGCAATTTTTATCGCGATGTAAGTT
CAGCACTCTTACAACTCGTCAACCAATGGTTGAATTTTACTTACTCACGT
TCCCACGCTTTCCGTTACGAAAGAAAGAACACAAATTCTGCTTAAGCTAA
GAATCGAACTCACGACTTCCGCACTAGCAGGTATGCAGGTTACCTACTAG
ACCACTCGGGCGACGAATGGCTAATATAAATATATGCTCGCATCCCTACA
ATGTACTTGTTTCCCTCAGATGGTCGACAGGATTGCTTCTCTTAGGGGAA
CCCTGGCGGACATCGATGACAGTATGCTCGATGCACGGAGTGCTCGGTGC
AGCTCATATGCTGATGCAGGAAAACTCGGCTGCATGATCTGGGGAACCTC
CGTTTTTAGGAAGAATGTGGTAGGTCCAAAACACCGAGGTCGCAGAGTTT
GCCGAGTCCGATTAGGCGCGCATACCGTTTTTCAGCTTTGAATCTTCTAA
GATGACGCTGCATCCAAGTCACCATACCGTTCAGGCTTTACGAATCAATA
GTTAACGATAACATATATTGCCCAATTAACATAGAAGCTTACCGATCGTA
TCGCAACATCTTCCCCGTTCGCTGGCGTTTTATGCAGAAGTAAAGCAGGG
TTACCTTTTTCTGCTGAAACTCAATCGTCTTTTTTGAGACTTTATGAACG
ATGAAGCAGACGATTTATCTCGGCCGAACACCTTCGATGAAGAAGACAAG
CTGCGGGGAGTGTCGTTTTATGCTACATGGGTCAATTTCCGTTTCGCGGG
GAGTGTTGTATTTGAATGTTCCTTCGTCATGAACGCCTCGTAGAAAAGTT
GTGCTTCAAAGATCTTGTAAGAGGTCGAATGGTGAGTAGGACCCGTTCTG
AACTCGTGTGATTGTAATAAGGTGTCGCTGGGCGGGTGGAAATGAATCAG
GTTACATTGCCATTTTGTAGCCTGGTTCTGAATGGCGTCGGGTAACAAAC
AAACGTAGATTGATAATTCTGCATTGTGAATCTGAACGTTTGGAGTTACC
TTTCACCGGGGTTTGATCGATATATAAGTAGTTAATGC

Coding sequence (CDS) from alignment at F-serratus_M_contig1019:217401..221688+

>mRNA_F-serratus_M_contig1019.257.1 ID=mRNA_F-serratus_M_contig1019.257.1|Name=mRNA_F-serratus_M_contig1019.257.1|organism=Fucus serratus male|type=CDS|length=426bp|location=Sequence derived from alignment at F-serratus_M_contig1019:217401..221688+ (Fucus serratus male)
ATGGAGCTTGTCGAGTTCGAAGATCAAACAACCAACCTGATCGTTAATTA
CCTGAACATGGAGCTTGTCGAGTTCGAAGATCAAACAACCAACCTGATCG
TTAATTACCTGAACATGGTCGACAGGATTGCTTCTCTTAGGGGAACCCTG
GCGGACATCGATGACAGTATGCTCGATGCACGGAGTGCTCGGTGCAGCTC
ATATGCTGATGCAGGAAAACTCGGCTGCATGATCTGGGGAACCTCCGTTT
TTAGGAAGAATGTGATGGTCGACAGGATTGCTTCTCTTAGGGGAACCCTG
GCGGACATCGATGACAGTATGCTCGATGCACGGAGTGCTCGGTGCAGCTC
ATATGCTGATGCAGGAAAACTCGGCTGCATGATCTGGGGAACCTCCGTTT
TTAGGAAGAATGTGAAGTAAAAGTAA