mRNA_F-serratus_M_contig1019.256.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1019.256.1
Unique NamemRNA_F-serratus_M_contig1019.256.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1019.256.1 vs. uniprot
Match: D8LE22_ECTSI (Probable glycine-sarcosine methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE22_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 5.290e-25
Identity = 53/94 (56.38%), Postives = 67/94 (71.28%), Query Frame = 1
Query:    4 VVCIEMTREFNAINAARSMRAGLTDNIIIPGERSIFETGIPAASMDRLMSTDCFGHVDGKTDAVMKEAARVLKRGSLMVFTSLMRSSTADATSL 285
            VVCI+++R FNA+NA  S  AGL+D IIIPGERS F+T +PAASMD ++S D FGH   +    +KEAARVLK G +M F+  M+S  AD T L
Sbjct:   80 VVCIDISRGFNAVNAKLSAAAGLSDKIIIPGERSYFDTEMPAASMDAVLSQDAFGHASTEHHRAIKEAARVLKPGGVMAFSDFMQSDDADPTKL 173          
BLAST of mRNA_F-serratus_M_contig1019.256.1 vs. uniprot
Match: A0A6H5KC33_9PHAE (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KC33_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 5.890e-17
Identity = 45/91 (49.45%), Postives = 56/91 (61.54%), Query Frame = 1
Query:    1 KVVCIEMTREFNAINAARSMRAGLTDNIIIPGERSIFETGIPAASMDRLMSTDCFGHVDGKTDAVMKEAARVLKRGSLMVFTSLMRSSTAD 273
            KVVCI +    N IN A +  AGL D +I+PGE+S FETG+P AS D + S D   H   +    + EAARVLK G  MVFT +M+S  AD
Sbjct:  120 KVVCINVASRENEINTAITKDAGLQDKVIVPGEKSFFETGMPDASCDVVTSQDALLHAGSERHRALGEAARVLKPGGRMVFTDIMQSKEAD 210          
BLAST of mRNA_F-serratus_M_contig1019.256.1 vs. uniprot
Match: D7G7W9_ECTSI (Putative sarcosine-dimethylglycine methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W9_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 2.170e-15
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = 1
Query:    1 KVVCIEMTREFNAINAARSMRAGLTDNIIIPGERSIFETGIPAASMDRLMSTDCFGHVDGKTDAVMKEAARVLKRGSLMVFTSLMR 258
            KVVCI +++  N  N A +  AGL D +I+PGE+S FETG+P AS D + S D   H   +    M EAARVLK G  MVF+ +M+
Sbjct:   93 KVVCINVSKRENETNVAMTKEAGLQDKVIVPGEKSFFETGLPDASCDVVASQDALLHSGPERHRSMAEAARVLKPGGRMVFSDIMQ 178          
BLAST of mRNA_F-serratus_M_contig1019.256.1 vs. uniprot
Match: A0A6H5KZ03_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ03_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.850e-15
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    4 VVCIEMTREFNAINAARSMRAGLTDNIIIPGERSIFETGIPAASMDRLMSTDCFGH 171
            VVCI+++R FN +NA  S  AGL+D IIIPGERS F+T +PAASMD ++S D FGH
Sbjct:   81 VVCIDISRGFNTVNAKLSAAAGLSDKIIIPGERSYFDTEMPAASMDAVLSQDAFGH 136          
BLAST of mRNA_F-serratus_M_contig1019.256.1 vs. uniprot
Match: A0A835YZA4_9STRA (Putative sarcosine-dimethylglycine methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZA4_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 4.620e-15
Identity = 39/94 (41.49%), Postives = 59/94 (62.77%), Query Frame = 1
Query:    4 VVCIEMTREFNAINAARSMRAGLTDNIIIPGERSIFETGIPAASMDRLMSTDCFGHVDGKTDAVMKEAARVLKRGSLMVFTSLMRSSTADATSL 285
            V CI+++ + N +N + +   GL D ++IPGERS FETG PA + D ++S D   H   +    ++EAARVLK G  +VFT +M+S+ A+   L
Sbjct:  105 VTCIDISCKENEVNRSTTAAEGLADKVLIPGERSFFETGEPAGAYDAVVSQDSLLHAGSERCRAIEEAARVLKPGGCLVFTDIMQSNDANTAEL 198          
BLAST of mRNA_F-serratus_M_contig1019.256.1 vs. uniprot
Match: D7G5Z7_ECTSI (Putative sarcosine-dimethylglycine methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Z7_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 2.650e-13
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 1
Query:    1 KVVCIEMTREFNAINAARSMRAGLTDNIIIPGERSIFETGIPAASMDRLMSTDCFGHVDGKTDAVMKEAARVLKRGSLMVFTSLMRSSTAD 273
            KV CI +T   N +N A S  AG+ D +IIPGE+S F+TG+P A  + + S D   H   +    + EAAR+LK G  MVF  +M+++ AD
Sbjct:  434 KVYCINVTSRENDVNRALSKAAGIEDLVIIPGEKSYFDTGLPDACCEVVTSQDALLHAGSERHRAVGEAARLLKPGGRMVFNDVMQTNHAD 524          
BLAST of mRNA_F-serratus_M_contig1019.256.1 vs. uniprot
Match: A0A6H5L7A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A2_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.250e-12
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 1
Query:    4 VVCIEMTREFNAINAARSMRAGLTDNIIIPGERSIFETGIPAASMDRLMSTDCFGHVDGKTDAVMKEAARVLKRGSLMVFTSLMRSSTAD 273
            V CI +T   N +N A S  AG+ D +IIPGE+S F+TG+P A  + + S D   H   +    + EAAR+LK G  MVF  +M+++ AD
Sbjct:  292 VYCINVTSRENDVNRALSKAAGIEDLVIIPGEKSYFDTGLPDACCEVVTSQDALLHAGSERHRAVGEAARLLKPGGRMVFNDVMQTNHAD 381          
BLAST of mRNA_F-serratus_M_contig1019.256.1 vs. uniprot
Match: A0A6H5L6E6_9PHAE (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E6_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.810e-12
Identity = 37/90 (41.11%), Postives = 54/90 (60.00%), Query Frame = 1
Query:    4 VVCIEMTREFNAINAARSMRAGLTDNIIIPGERSIFETGIPAASMDRLMSTDCFGHVDGKTDAVMKEAARVLKRGSLMVFTSLMRSSTAD 273
            V CI +T   N +N A S  AG+ + +IIPGE+S F+TG+P A  + + S D   H   +    + EAAR+LK G  MVF  +M+++ AD
Sbjct:  235 VYCINVTSRENDVNRALSKAAGIENLVIIPGEKSYFDTGLPDACCEVVTSQDALLHAGSERHRAVGEAARLLKPGGRMVFNDVMQTNNAD 324          
BLAST of mRNA_F-serratus_M_contig1019.256.1 vs. uniprot
Match: L1JQG8_GUITC (Methyltransf_11 domain-containing protein n=2 Tax=Geminigeraceae TaxID=589343 RepID=L1JQG8_GUITC)

HSP 1 Score: 69.7 bits (169), Expect = 4.800e-12
Identity = 36/95 (37.89%), Postives = 55/95 (57.89%), Query Frame = 1
Query:    1 KVVCIEMTREFNAINAARSMRAGLTDNIIIPGERSIFETGIPAASMDRLMSTDCFGHVDGKTDAVMKEAARVLKRGSLMVFTSLMRSSTADATSL 285
            KVVC+E+++  N +N  R++   + D II+PGE S  +T   A   D  +S D   H      AV+ EAARVL++G L VF+ +M+    D ++L
Sbjct:  102 KVVCVELSKRENEVNIQRNVELKMQDKIIVPGELSFLDTQQEAGVFDCCVSEDSILHAGKARPAVVAEAARVLRKGGLFVFSDIMQKDCVDTSTL 196          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1019.256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LE22_ECTSI5.290e-2556.38Probable glycine-sarcosine methyltransferase n=1 T... [more]
A0A6H5KC33_9PHAE5.890e-1749.45Methyltransf_11 domain-containing protein n=2 Tax=... [more]
D7G7W9_ECTSI2.170e-1547.67Putative sarcosine-dimethylglycine methyltransfera... [more]
A0A6H5KZ03_9PHAE2.850e-1562.50Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A835YZA4_9STRA4.620e-1541.49Putative sarcosine-dimethylglycine methyltransfera... [more]
D7G5Z7_ECTSI2.650e-1342.86Putative sarcosine-dimethylglycine methyltransfera... [more]
A0A6H5L7A2_9PHAE1.250e-1242.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6E6_9PHAE2.810e-1241.11Methyltransf_11 domain-containing protein n=1 Tax=... [more]
L1JQG8_GUITC4.800e-1237.89Methyltransf_11 domain-containing protein n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1019contigF-serratus_M_contig1019:216700..217156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue3.6e-18
Seed eggNOG ortholog2880.D8LE22
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Methyltransferase domain
EggNOG OGs2E18F@1,2S8KF@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size291
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1019.256.1prot_F-serratus_M_contig1019.256.1Fucus serratus malepolypeptideF-serratus_M_contig1019 216718..217156 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928818.202553-UTR-F-serratus_M_contig1019:216699..2167171622928818.202553-UTR-F-serratus_M_contig1019:216699..216717Fucus serratus maleUTRF-serratus_M_contig1019 216700..216717 +
1690962586.293939-UTR-F-serratus_M_contig1019:216699..2167171690962586.293939-UTR-F-serratus_M_contig1019:216699..216717Fucus serratus maleUTRF-serratus_M_contig1019 216700..216717 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928818.2149875-CDS-F-serratus_M_contig1019:216717..2168001622928818.2149875-CDS-F-serratus_M_contig1019:216717..216800Fucus serratus maleCDSF-serratus_M_contig1019 216718..216800 +
1690962586.3051176-CDS-F-serratus_M_contig1019:216717..2168001690962586.3051176-CDS-F-serratus_M_contig1019:216717..216800Fucus serratus maleCDSF-serratus_M_contig1019 216718..216800 +
1622928818.246557-CDS-F-serratus_M_contig1019:216966..2171561622928818.246557-CDS-F-serratus_M_contig1019:216966..217156Fucus serratus maleCDSF-serratus_M_contig1019 216967..217156 +
1690962586.320019-CDS-F-serratus_M_contig1019:216966..2171561690962586.320019-CDS-F-serratus_M_contig1019:216966..217156Fucus serratus maleCDSF-serratus_M_contig1019 216967..217156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1019.256.1

>prot_F-serratus_M_contig1019.256.1 ID=prot_F-serratus_M_contig1019.256.1|Name=mRNA_F-serratus_M_contig1019.256.1|organism=Fucus serratus male|type=polypeptide|length=91bp
MTREFNAINAARSMRAGLTDNIIIPGERSIFETGIPAASMDRLMSTDCFG
HVDGKTDAVMKEAARVLKRGSLMVFTSLMRSSTADATSLAK
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mRNA from alignment at F-serratus_M_contig1019:216700..217156+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1019.256.1 ID=mRNA_F-serratus_M_contig1019.256.1|Name=mRNA_F-serratus_M_contig1019.256.1|organism=Fucus serratus male|type=mRNA|length=457bp|location=Sequence derived from alignment at F-serratus_M_contig1019:216700..217156+ (Fucus serratus male)
AAGGTCGTGTGCATCGAAATGACCAGAGAGTTCAACGCCATCAACGCCGC CCGCTCGATGAGGGCAGGACTGACGGATAACATTATCATCCCCGGCGAGA GGTAGGGCATGAAATCACAGAACTACCCCCCCCCCGGCAATCCGGCGACC TTCTTGCTGTACATACAAACGAGTATGGTCTGTGCGATGATTTTTCCCAT AGTTACGAGTTTTGGTCATGGGTCCATTCGCAATATCCCTCCTTACTTGT TTCTGTTATGTTCGTAGGTCCATCTTTGAAACCGGAATACCGGCGGCAAG CATGGACCGTCTTATGTCAACAGACTGTTTCGGACACGTCGACGGCAAAA CCGACGCAGTCATGAAAGAAGCTGCGCGCGTGCTCAAGCGTGGTAGTCTT ATGGTGTTTACGAGTCTCATGCGGTCCAGTACGGCGGATGCAACTTCTCT GGCAAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1019:216700..217156+

>mRNA_F-serratus_M_contig1019.256.1 ID=mRNA_F-serratus_M_contig1019.256.1|Name=mRNA_F-serratus_M_contig1019.256.1|organism=Fucus serratus male|type=CDS|length=546bp|location=Sequence derived from alignment at F-serratus_M_contig1019:216700..217156+ (Fucus serratus male)
ATGACCAGAGAGTTCAACGCCATCAACGCCGCCCGCTCGATGAGGGCAGG
ACTGACGGATAACATTATCATCCCCGGCGAGAGATGACCAGAGAGTTCAA
CGCCATCAACGCCGCCCGCTCGATGAGGGCAGGACTGACGGATAACATTA
TCATCCCCGGCGAGAGGTCCATCTTTGAAACCGGAATACCGGCGGCAAGC
ATGGACCGTCTTATGTCAACAGACTGTTTCGGACACGTCGACGGCAAAAC
CGACGCAGTCATGAAAGAAGCTGCGCGCGTGCTCAAGCGTGGTAGTCTTA
TGGTGTTTACGAGTCTCATGCGGTCCAGTACGGCGGATGCAACTTCTCTG
GCAAAGGTCCATCTTTGAAACCGGAATACCGGCGGCAAGCATGGACCGTC
TTATGTCAACAGACTGTTTCGGACACGTCGACGGCAAAACCGACGCAGTC
ATGAAAGAAGCTGCGCGCGTGCTCAAGCGTGGTAGTCTTATGGTGTTTAC
GAGTCTCATGCGGTCCAGTACGGCGGATGCAACTTCTCTGGCAAAG
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