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Homology
BLAST of mRNA_F-serratus_M_contig1014.241.1 vs. uniprot
Match: D7FV59_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV59_ECTSI) HSP 1 Score: 385 bits (990), Expect = 7.840e-125 Identity = 259/499 (51.90%), Postives = 312/499 (62.53%), Query Frame = 1
Query: 4 MRTLFAFLGLGVEQLAPLQSHLLALLRTADNDKDEWVQVASGLVRRSVMPSG-DARTDDGSETVSSN---ILRKAVTEVLDRSDEILAERARRRGKQKPKGDAEV------LSLCEAPYFGPLEERFVSRKQRRPKQEFSNAHLSEKCDLLSEISDDMI--VGGASHSTSPHPTE-----KAKRQGLQASHGGSTKPPSTSLHSST-TGPNLAQARRVSVAAAADPTAGSDGLRRTSKPLALARNHGGGQVSGGGPLFGSQKSGSSATGGRGVRXXXXXXXXGKKGVMMINVDDLNALHAEKEITKERLKGKPGRKKAKLSHEDEQEGAIADKPDGVVDVDGFQQPPQPTTREAEADEECQDERATESDAVVAKPATPEKTPMTGETAMAIPQQGEIEAMAAMMVLGVGGGEKEDVAPSLPEPLTKLLENANALKPEGKTKLESFFQKKAPEGLTQERVKYHEEVSDGAEGETMRVTSYIRLDYEKWIWDRVHKRKVAK 1446
M+ L AFLG E LA L L +LL AD+DKDEWVQV SGLVR+ ++P D T G E +S +LRK V EVL+R+ + ++ERA GKQ+ G + + + EAPYFGPLEER+VSRKQ+ KQEF+NAH S K D + E S+D+ VGG S+ TS PT A + GG K P + + T PNLAQARRVS+AA DP+AGSDGLRRTSKPLAL+RN+ G Q GS ++ S G RG R GK G+MMINVD+L A+HAEK+ +E+ KGKPGRKKAKL EQ A + P G QQ T D + + + E AKP P K T + M +PQQGEIEA+AAMMVLGV GG ++ LPE LTKLLENAN+L+PEGK KLESFFQKK PEG QERVKYHEEVS GA+GE MRVTSYIRLDYE W+WDRVHK+K K
Sbjct: 1 MKALIAFLGARKEHLASLNHVLPSLLGMADSDKDEWVQVVSGLVRQKLLPRDEDDSTSVGDEAKTSQSDFVLRKTVREVLERAKQNMSERAGN-GKQRVVGGSTIGGNRDTRRMREAPYFGPLEERYVSRKQQPRKQEFANAHFSVKYDFVGEFSEDLASNVGGTSN-TSSSPTGGGASVAAAALASRVGQGGLLKTPGSFAPAPTPAAPNLAQARRVSLAAVVDPSAGSDGLRRTSKPLALSRNYVGLQ-------HGSGRTSSGVGGARGTRGGGGASP-GKAGLMMINVDELQAIHAEKQSAREKAKGKPGRKKAKLEGGGEQSTAGME-PGTGASATGTQQVVANATDVGNTDGQLPEGASGEGKK--AKPKAPAKPSATADGPMPVPQQGEIEAVAAMMVLGVAGGGEDAETSYLPEALTKLLENANSLRPEGKAKLESFFQKKMPEGSQQERVKYHEEVSPGADGEMMRVTSYIRLDYETWVWDRVHKKKRVK 486
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | expressed unknown protein |
Ec32 ortholog | Ec-12_007450.1 |
Exons | 1 |
Model size | 1795 |
Cds size | 1446 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928816.1958532-UTR-F-serratus_M_contig1014:217090..217093 | 1622928816.1958532-UTR-F-serratus_M_contig1014:217090..217093 | Fucus serratus male | UTR | F-serratus_M_contig1014 217091..217093 + |
1690962585.369074-UTR-F-serratus_M_contig1014:217090..217093 | 1690962585.369074-UTR-F-serratus_M_contig1014:217090..217093 | Fucus serratus male | UTR | F-serratus_M_contig1014 217091..217093 + |
1622928816.2212605-UTR-F-serratus_M_contig1014:218539..218885 | 1622928816.2212605-UTR-F-serratus_M_contig1014:218539..218885 | Fucus serratus male | UTR | F-serratus_M_contig1014 218540..218885 + |
1690962585.3906317-UTR-F-serratus_M_contig1014:218539..218885 | 1690962585.3906317-UTR-F-serratus_M_contig1014:218539..218885 | Fucus serratus male | UTR | F-serratus_M_contig1014 218540..218885 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928816.205781-CDS-F-serratus_M_contig1014:217093..218539 | 1622928816.205781-CDS-F-serratus_M_contig1014:217093..218539 | Fucus serratus male | CDS | F-serratus_M_contig1014 217094..218539 + |
1690962585.3783257-CDS-F-serratus_M_contig1014:217093..218539 | 1690962585.3783257-CDS-F-serratus_M_contig1014:217093..218539 | Fucus serratus male | CDS | F-serratus_M_contig1014 217094..218539 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1014.241.1 >prot_F-serratus_M_contig1014.241.1 ID=prot_F-serratus_M_contig1014.241.1|Name=mRNA_F-serratus_M_contig1014.241.1|organism=Fucus serratus male|type=polypeptide|length=482bp
MRTLFAFLGLGVEQLAPLQSHLLALLRTADNDKDEWVQVASGLVRRSVMP SGDARTDDGSETVSSNILRKAVTEVLDRSDEILAERARRRGKQKPKGDAE VLSLCEAPYFGPLEERFVSRKQRRPKQEFSNAHLSEKCDLLSEISDDMIV GGASHSTSPHPTEKAKRQGLQASHGGSTKPPSTSLHSSTTGPNLAQARRV SVAAAADPTAGSDGLRRTSKPLALARNHGGGQVSGGGPLFGSQKSGSSAT GGRGVRAGGGAASGGKKGVMMINVDDLNALHAEKEITKERLKGKPGRKKA KLSHEDEQEGAIADKPDGVVDVDGFQQPPQPTTREAEADEECQDERATES DAVVAKPATPEKTPMTGETAMAIPQQGEIEAMAAMMVLGVGGGEKEDVAP SLPEPLTKLLENANALKPEGKTKLESFFQKKAPEGLTQERVKYHEEVSDG AEGETMRVTSYIRLDYEKWIWDRVHKRKVAK* back to topmRNA from alignment at F-serratus_M_contig1014:217091..218885+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig1014.241.1 ID=mRNA_F-serratus_M_contig1014.241.1|Name=mRNA_F-serratus_M_contig1014.241.1|organism=Fucus serratus male|type=mRNA|length=1795bp|location=Sequence derived from alignment at F-serratus_M_contig1014:217091..218885+ (Fucus serratus male) CAGATGAGAACCCTGTTTGCCTTCCTGGGACTTGGTGTGGAACAGCTCGC
ACCTCTTCAGAGCCATCTTCTCGCACTCCTACGAACTGCCGACAACGATA
AGGATGAGTGGGTCCAAGTTGCTTCCGGGCTCGTACGCCGAAGCGTCATG
CCAAGTGGAGACGCACGAACGGACGACGGTTCGGAGACAGTCTCCTCTAA
TATCTTACGTAAGGCGGTTACGGAAGTGCTTGATCGATCGGACGAAATAC
TAGCGGAGCGCGCGCGCAGGCGTGGAAAACAAAAACCCAAGGGTGATGCC
GAAGTACTGTCTCTCTGTGAGGCCCCGTATTTTGGCCCACTGGAGGAGCG
CTTCGTCAGCCGGAAGCAGCGGAGGCCAAAGCAAGAGTTCTCCAATGCAC
ACTTGAGCGAGAAATGCGACTTGCTGAGCGAGATCTCAGATGACATGATC
GTCGGTGGTGCGTCGCACTCGACCAGCCCACACCCTACGGAGAAGGCCAA
ACGTCAAGGATTACAGGCGAGCCACGGGGGGTCGACGAAGCCGCCAAGCA
CGTCGTTGCATTCCTCTACTACAGGGCCGAACCTCGCACAAGCTCGGCGA
GTTTCTGTCGCGGCGGCTGCTGATCCGACCGCGGGCTCCGACGGCCTCCG
AAGAACAAGCAAGCCGCTGGCCCTGGCGCGAAACCATGGCGGGGGCCAGG
TGAGCGGGGGTGGTCCGCTCTTCGGCAGCCAGAAGAGTGGTTCGAGTGCC
ACAGGGGGGCGCGGGGTACGCGCGGGGGGCGGGGCGGCAAGCGGCGGTAA
GAAAGGGGTTATGATGATTAACGTGGACGATCTCAACGCGCTTCACGCTG
AGAAGGAAATCACTAAGGAGAGGCTAAAGGGAAAGCCTGGTAGGAAGAAG
GCCAAGCTCAGTCATGAGGACGAGCAAGAAGGGGCGATTGCAGACAAACC
CGACGGAGTCGTGGACGTCGACGGATTCCAGCAGCCTCCCCAACCCACCA
CCAGGGAAGCCGAGGCAGATGAGGAATGTCAGGATGAAAGAGCAACTGAA
TCCGACGCGGTGGTCGCAAAACCTGCCACTCCGGAGAAAACACCTATGAC
GGGCGAGACGGCGATGGCCATCCCGCAACAGGGCGAGATCGAGGCGATGG
CGGCGATGATGGTTCTGGGTGTTGGGGGCGGAGAAAAAGAGGATGTCGCA
CCCTCTTTGCCTGAGCCATTGACGAAGCTTTTAGAAAACGCCAACGCCCT
AAAACCAGAGGGCAAGACGAAGCTCGAGAGCTTCTTCCAAAAGAAGGCCC
CGGAGGGATTGACGCAAGAGCGGGTCAAGTACCACGAAGAAGTTTCTGAC
GGAGCTGAGGGCGAAACGATGCGTGTGACGAGTTATATTCGGCTGGATTA
CGAGAAGTGGATATGGGATCGGGTACACAAGAGAAAAGTCGCCAAGTGAC
ACCCATTCCCTATCGAAAATAACTTGTCACACGCATGGTTTCTCCCTCAT
TTCTGTAAGCTCCAGTTTCATCTTGGAAATGCGCGAATATGGTGGTGTGT
GGTGTGGTGTAACGGAAGGCATACGATGAACAGCAGGGCGTTAGTTAGGG
TTTTCGACATTTTGCTGGCCGTGCACGGGGATCGTCCCCACACGGAGAGT
GTCCAGGATTGGTCGGGTTCATGGTGTGGTGTGGTGTGGCGAAGAGAAAA
CAGAAGTGATACCTGGTATTGAGGAAGTACAGCCTCTTTTTTACAGTATG
ATTCCACTTACAGTGCGTCCTAATTCAACACGAAGGACCAATCAA back to topCoding sequence (CDS) from alignment at F-serratus_M_contig1014:217091..218885+ >mRNA_F-serratus_M_contig1014.241.1 ID=mRNA_F-serratus_M_contig1014.241.1|Name=mRNA_F-serratus_M_contig1014.241.1|organism=Fucus serratus male|type=CDS|length=2892bp|location=Sequence derived from alignment at F-serratus_M_contig1014:217091..218885+ (Fucus serratus male) ATGAGAACCCTGTTTGCCTTCCTGGGACTTGGTGTGGAACAGCTCGCACC TCTTCAGAGCCATCTTCTCGCACTCCTACGAACTGCCGACAACGATAAGG ATGAGTGGGTCCAAGTTGCTTCCGGGCTCGTACGCCGAAGCGTCATGCCA AGTGGAGACGCACGAACGGACGACGGTTCGGAGACAGTCTCCTCTAATAT CTTACGTAAGGCGGTTACGGAAGTGCTTGATCGATCGGACGAAATACTAG CGGAGCGCGCGCGCAGGCGTGGAAAACAAAAACCCAAGGGTGATGCCGAA GTACTGTCTCTCTGTGAGGCCCCGTATTTTGGCCCACTGGAGGAGCGCTT CGTCAGCCGGAAGCAGCGGAGGCCAAAGCAAGAGTTCTCCAATGCACACT TGAGCGAGAAATGCGACTTGCTGAGCGAGATCTCAGATGACATGATCGTC GGTGGTGCGTCGCACTCGACCAGCCCACACCCTACGGAGAAGGCCAAACG TCAAGGATTACAGGCGAGCCACGGGGGGTCGACGAAGCCGCCAAGCACGT CGTTGCATTCCTCTACTACAGGGCCGAACCTCGCACAAGCTCGGCGAGTT TCTGTCGCGGCGGCTGCTGATCCGACCGCGGGCTCCGACGGCCTCCGAAG AACAAGCAAGCCGCTGGCCCTGGCGCGAAACCATGGCGGGGGCCAGGTGA GCGGGGGTGGTCCGCTCTTCGGCAGCCAGAAGAGTGGTTCGAGTGCCACA GGGGGGCGCGGGGTACGCGCGGGGGGCGGGGCGGCAAGCGGCGGTAAGAA AGGGGTTATGATGATTAACGTGGACGATCTCAACGCGCTTCACGCTGAGA AGGAAATCACTAAGGAGAGGCTAAAGGGAAAGCCTGGTAGGAAGAAGGCC AAGCTCAGTCATGAGGACGAGCAAGAAGGGGCGATTGCAGACAAACCCGA CGGAGTCGTGGACGTCGACGGATTCCAGCAGCCTCCCCAACCCACCACCA GGGAAGCCGAGGCAGATGAGGAATGTCAGGATGAAAGAGCAACTGAATCC GACGCGGTGGTCGCAAAACCTGCCACTCCGGAGAAAACACCTATGACGGG CGAGACGGCGATGGCCATCCCGCAACAGGGCGAGATCGAGGCGATGGCGG CGATGATGGTTCTGGGTGTTGGGGGCGGAGAAAAAGAGGATGTCGCACCC TCTTTGCCTGAGCCATTGACGAAGCTTTTAGAAAACGCCAACGCCCTAAA ACCAGAGGGCAAGACGAAGCTCGAGAGCTTCTTCCAAAAGAAGGCCCCGG AGGGATTGACGCAAGAGCGGGTCAAGTACCACGAAGAAGTTTCTGACGGA GCTGAGGGCGAAACGATGCGTGTGACGAGTTATATTCGGCTGGATTACGA GAAGTGGATATGGGATCGGGTACACAAGAGAAAAGTCGCCAAGTGAATGA GAACCCTGTTTGCCTTCCTGGGACTTGGTGTGGAACAGCTCGCACCTCTT CAGAGCCATCTTCTCGCACTCCTACGAACTGCCGACAACGATAAGGATGA GTGGGTCCAAGTTGCTTCCGGGCTCGTACGCCGAAGCGTCATGCCAAGTG GAGACGCACGAACGGACGACGGTTCGGAGACAGTCTCCTCTAATATCTTA CGTAAGGCGGTTACGGAAGTGCTTGATCGATCGGACGAAATACTAGCGGA GCGCGCGCGCAGGCGTGGAAAACAAAAACCCAAGGGTGATGCCGAAGTAC TGTCTCTCTGTGAGGCCCCGTATTTTGGCCCACTGGAGGAGCGCTTCGTC AGCCGGAAGCAGCGGAGGCCAAAGCAAGAGTTCTCCAATGCACACTTGAG CGAGAAATGCGACTTGCTGAGCGAGATCTCAGATGACATGATCGTCGGTG GTGCGTCGCACTCGACCAGCCCACACCCTACGGAGAAGGCCAAACGTCAA GGATTACAGGCGAGCCACGGGGGGTCGACGAAGCCGCCAAGCACGTCGTT GCATTCCTCTACTACAGGGCCGAACCTCGCACAAGCTCGGCGAGTTTCTG TCGCGGCGGCTGCTGATCCGACCGCGGGCTCCGACGGCCTCCGAAGAACA AGCAAGCCGCTGGCCCTGGCGCGAAACCATGGCGGGGGCCAGGTGAGCGG GGGTGGTCCGCTCTTCGGCAGCCAGAAGAGTGGTTCGAGTGCCACAGGGG GGCGCGGGGTACGCGCGGGGGGCGGGGCGGCAAGCGGCGGTAAGAAAGGG GTTATGATGATTAACGTGGACGATCTCAACGCGCTTCACGCTGAGAAGGA AATCACTAAGGAGAGGCTAAAGGGAAAGCCTGGTAGGAAGAAGGCCAAGC TCAGTCATGAGGACGAGCAAGAAGGGGCGATTGCAGACAAACCCGACGGA GTCGTGGACGTCGACGGATTCCAGCAGCCTCCCCAACCCACCACCAGGGA AGCCGAGGCAGATGAGGAATGTCAGGATGAAAGAGCAACTGAATCCGACG CGGTGGTCGCAAAACCTGCCACTCCGGAGAAAACACCTATGACGGGCGAG ACGGCGATGGCCATCCCGCAACAGGGCGAGATCGAGGCGATGGCGGCGAT GATGGTTCTGGGTGTTGGGGGCGGAGAAAAAGAGGATGTCGCACCCTCTT TGCCTGAGCCATTGACGAAGCTTTTAGAAAACGCCAACGCCCTAAAACCA GAGGGCAAGACGAAGCTCGAGAGCTTCTTCCAAAAGAAGGCCCCGGAGGG ATTGACGCAAGAGCGGGTCAAGTACCACGAAGAAGTTTCTGACGGAGCTG AGGGCGAAACGATGCGTGTGACGAGTTATATTCGGCTGGATTACGAGAAG TGGATATGGGATCGGGTACACAAGAGAAAAGTCGCCAAGTGA back to top
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