mRNA_F-serratus_M_contig1014.241.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1014.241.1
Unique NamemRNA_F-serratus_M_contig1014.241.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1014.241.1 vs. uniprot
Match: D7FV59_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV59_ECTSI)

HSP 1 Score: 385 bits (990), Expect = 7.840e-125
Identity = 259/499 (51.90%), Postives = 312/499 (62.53%), Query Frame = 1 
Query:    4 MRTLFAFLGLGVEQLAPLQSHLLALLRTADNDKDEWVQVASGLVRRSVMPSG-DARTDDGSETVSSN---ILRKAVTEVLDRSDEILAERARRRGKQKPKGDAEV------LSLCEAPYFGPLEERFVSRKQRRPKQEFSNAHLSEKCDLLSEISDDMI--VGGASHSTSPHPTE-----KAKRQGLQASHGGSTKPPSTSLHSST-TGPNLAQARRVSVAAAADPTAGSDGLRRTSKPLALARNHGGGQVSGGGPLFGSQKSGSSATGGRGVRXXXXXXXXGKKGVMMINVDDLNALHAEKEITKERLKGKPGRKKAKLSHEDEQEGAIADKPDGVVDVDGFQQPPQPTTREAEADEECQDERATESDAVVAKPATPEKTPMTGETAMAIPQQGEIEAMAAMMVLGVGGGEKEDVAPSLPEPLTKLLENANALKPEGKTKLESFFQKKAPEGLTQERVKYHEEVSDGAEGETMRVTSYIRLDYEKWIWDRVHKRKVAK 1446
            M+ L AFLG   E LA L   L +LL  AD+DKDEWVQV SGLVR+ ++P   D  T  G E  +S    +LRK V EVL+R+ + ++ERA   GKQ+  G + +        + EAPYFGPLEER+VSRKQ+  KQEF+NAH S K D + E S+D+   VGG S+ TS  PT       A     +   GG  K P +   + T   PNLAQARRVS+AA  DP+AGSDGLRRTSKPLAL+RN+ G Q        GS ++ S   G RG R        GK G+MMINVD+L A+HAEK+  +E+ KGKPGRKKAKL    EQ  A  + P       G QQ     T     D +  +  + E     AKP  P K   T +  M +PQQGEIEA+AAMMVLGV GG ++     LPE LTKLLENAN+L+PEGK KLESFFQKK PEG  QERVKYHEEVS GA+GE MRVTSYIRLDYE W+WDRVHK+K  K
Sbjct:    1 MKALIAFLGARKEHLASLNHVLPSLLGMADSDKDEWVQVVSGLVRQKLLPRDEDDSTSVGDEAKTSQSDFVLRKTVREVLERAKQNMSERAGN-GKQRVVGGSTIGGNRDTRRMREAPYFGPLEERYVSRKQQPRKQEFANAHFSVKYDFVGEFSEDLASNVGGTSN-TSSSPTGGGASVAAAALASRVGQGGLLKTPGSFAPAPTPAAPNLAQARRVSLAAVVDPSAGSDGLRRTSKPLALSRNYVGLQ-------HGSGRTSSGVGGARGTRGGGGASP-GKAGLMMINVDELQAIHAEKQSAREKAKGKPGRKKAKLEGGGEQSTAGME-PGTGASATGTQQVVANATDVGNTDGQLPEGASGEGKK--AKPKAPAKPSATADGPMPVPQQGEIEAVAAMMVLGVAGGGEDAETSYLPEALTKLLENANSLRPEGKAKLESFFQKKMPEGSQQERVKYHEEVSPGADGEMMRVTSYIRLDYETWVWDRVHKKKRVK 486
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1014.241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FV59_ECTSI7.840e-12551.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1014contigF-serratus_M_contig1014:217091..218885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_007450.1
Exons1
Model size1795
Cds size1446
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1014.241.1prot_F-serratus_M_contig1014.241.1Fucus serratus malepolypeptideF-serratus_M_contig1014 217094..218539 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928816.1958532-UTR-F-serratus_M_contig1014:217090..2170931622928816.1958532-UTR-F-serratus_M_contig1014:217090..217093Fucus serratus maleUTRF-serratus_M_contig1014 217091..217093 +
1690962585.369074-UTR-F-serratus_M_contig1014:217090..2170931690962585.369074-UTR-F-serratus_M_contig1014:217090..217093Fucus serratus maleUTRF-serratus_M_contig1014 217091..217093 +
1622928816.2212605-UTR-F-serratus_M_contig1014:218539..2188851622928816.2212605-UTR-F-serratus_M_contig1014:218539..218885Fucus serratus maleUTRF-serratus_M_contig1014 218540..218885 +
1690962585.3906317-UTR-F-serratus_M_contig1014:218539..2188851690962585.3906317-UTR-F-serratus_M_contig1014:218539..218885Fucus serratus maleUTRF-serratus_M_contig1014 218540..218885 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928816.205781-CDS-F-serratus_M_contig1014:217093..2185391622928816.205781-CDS-F-serratus_M_contig1014:217093..218539Fucus serratus maleCDSF-serratus_M_contig1014 217094..218539 +
1690962585.3783257-CDS-F-serratus_M_contig1014:217093..2185391690962585.3783257-CDS-F-serratus_M_contig1014:217093..218539Fucus serratus maleCDSF-serratus_M_contig1014 217094..218539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1014.241.1

>prot_F-serratus_M_contig1014.241.1 ID=prot_F-serratus_M_contig1014.241.1|Name=mRNA_F-serratus_M_contig1014.241.1|organism=Fucus serratus male|type=polypeptide|length=482bp
MRTLFAFLGLGVEQLAPLQSHLLALLRTADNDKDEWVQVASGLVRRSVMP
SGDARTDDGSETVSSNILRKAVTEVLDRSDEILAERARRRGKQKPKGDAE
VLSLCEAPYFGPLEERFVSRKQRRPKQEFSNAHLSEKCDLLSEISDDMIV
GGASHSTSPHPTEKAKRQGLQASHGGSTKPPSTSLHSSTTGPNLAQARRV
SVAAAADPTAGSDGLRRTSKPLALARNHGGGQVSGGGPLFGSQKSGSSAT
GGRGVRAGGGAASGGKKGVMMINVDDLNALHAEKEITKERLKGKPGRKKA
KLSHEDEQEGAIADKPDGVVDVDGFQQPPQPTTREAEADEECQDERATES
DAVVAKPATPEKTPMTGETAMAIPQQGEIEAMAAMMVLGVGGGEKEDVAP
SLPEPLTKLLENANALKPEGKTKLESFFQKKAPEGLTQERVKYHEEVSDG
AEGETMRVTSYIRLDYEKWIWDRVHKRKVAK*
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mRNA from alignment at F-serratus_M_contig1014:217091..218885+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1014.241.1 ID=mRNA_F-serratus_M_contig1014.241.1|Name=mRNA_F-serratus_M_contig1014.241.1|organism=Fucus serratus male|type=mRNA|length=1795bp|location=Sequence derived from alignment at F-serratus_M_contig1014:217091..218885+ (Fucus serratus male)
CAGATGAGAACCCTGTTTGCCTTCCTGGGACTTGGTGTGGAACAGCTCGC
ACCTCTTCAGAGCCATCTTCTCGCACTCCTACGAACTGCCGACAACGATA
AGGATGAGTGGGTCCAAGTTGCTTCCGGGCTCGTACGCCGAAGCGTCATG
CCAAGTGGAGACGCACGAACGGACGACGGTTCGGAGACAGTCTCCTCTAA
TATCTTACGTAAGGCGGTTACGGAAGTGCTTGATCGATCGGACGAAATAC
TAGCGGAGCGCGCGCGCAGGCGTGGAAAACAAAAACCCAAGGGTGATGCC
GAAGTACTGTCTCTCTGTGAGGCCCCGTATTTTGGCCCACTGGAGGAGCG
CTTCGTCAGCCGGAAGCAGCGGAGGCCAAAGCAAGAGTTCTCCAATGCAC
ACTTGAGCGAGAAATGCGACTTGCTGAGCGAGATCTCAGATGACATGATC
GTCGGTGGTGCGTCGCACTCGACCAGCCCACACCCTACGGAGAAGGCCAA
ACGTCAAGGATTACAGGCGAGCCACGGGGGGTCGACGAAGCCGCCAAGCA
CGTCGTTGCATTCCTCTACTACAGGGCCGAACCTCGCACAAGCTCGGCGA
GTTTCTGTCGCGGCGGCTGCTGATCCGACCGCGGGCTCCGACGGCCTCCG
AAGAACAAGCAAGCCGCTGGCCCTGGCGCGAAACCATGGCGGGGGCCAGG
TGAGCGGGGGTGGTCCGCTCTTCGGCAGCCAGAAGAGTGGTTCGAGTGCC
ACAGGGGGGCGCGGGGTACGCGCGGGGGGCGGGGCGGCAAGCGGCGGTAA
GAAAGGGGTTATGATGATTAACGTGGACGATCTCAACGCGCTTCACGCTG
AGAAGGAAATCACTAAGGAGAGGCTAAAGGGAAAGCCTGGTAGGAAGAAG
GCCAAGCTCAGTCATGAGGACGAGCAAGAAGGGGCGATTGCAGACAAACC
CGACGGAGTCGTGGACGTCGACGGATTCCAGCAGCCTCCCCAACCCACCA
CCAGGGAAGCCGAGGCAGATGAGGAATGTCAGGATGAAAGAGCAACTGAA
TCCGACGCGGTGGTCGCAAAACCTGCCACTCCGGAGAAAACACCTATGAC
GGGCGAGACGGCGATGGCCATCCCGCAACAGGGCGAGATCGAGGCGATGG
CGGCGATGATGGTTCTGGGTGTTGGGGGCGGAGAAAAAGAGGATGTCGCA
CCCTCTTTGCCTGAGCCATTGACGAAGCTTTTAGAAAACGCCAACGCCCT
AAAACCAGAGGGCAAGACGAAGCTCGAGAGCTTCTTCCAAAAGAAGGCCC
CGGAGGGATTGACGCAAGAGCGGGTCAAGTACCACGAAGAAGTTTCTGAC
GGAGCTGAGGGCGAAACGATGCGTGTGACGAGTTATATTCGGCTGGATTA
CGAGAAGTGGATATGGGATCGGGTACACAAGAGAAAAGTCGCCAAGTGAC
ACCCATTCCCTATCGAAAATAACTTGTCACACGCATGGTTTCTCCCTCAT
TTCTGTAAGCTCCAGTTTCATCTTGGAAATGCGCGAATATGGTGGTGTGT
GGTGTGGTGTAACGGAAGGCATACGATGAACAGCAGGGCGTTAGTTAGGG
TTTTCGACATTTTGCTGGCCGTGCACGGGGATCGTCCCCACACGGAGAGT
GTCCAGGATTGGTCGGGTTCATGGTGTGGTGTGGTGTGGCGAAGAGAAAA
CAGAAGTGATACCTGGTATTGAGGAAGTACAGCCTCTTTTTTACAGTATG
ATTCCACTTACAGTGCGTCCTAATTCAACACGAAGGACCAATCAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1014:217091..218885+

>mRNA_F-serratus_M_contig1014.241.1 ID=mRNA_F-serratus_M_contig1014.241.1|Name=mRNA_F-serratus_M_contig1014.241.1|organism=Fucus serratus male|type=CDS|length=2892bp|location=Sequence derived from alignment at F-serratus_M_contig1014:217091..218885+ (Fucus serratus male)
ATGAGAACCCTGTTTGCCTTCCTGGGACTTGGTGTGGAACAGCTCGCACC
TCTTCAGAGCCATCTTCTCGCACTCCTACGAACTGCCGACAACGATAAGG
ATGAGTGGGTCCAAGTTGCTTCCGGGCTCGTACGCCGAAGCGTCATGCCA
AGTGGAGACGCACGAACGGACGACGGTTCGGAGACAGTCTCCTCTAATAT
CTTACGTAAGGCGGTTACGGAAGTGCTTGATCGATCGGACGAAATACTAG
CGGAGCGCGCGCGCAGGCGTGGAAAACAAAAACCCAAGGGTGATGCCGAA
GTACTGTCTCTCTGTGAGGCCCCGTATTTTGGCCCACTGGAGGAGCGCTT
CGTCAGCCGGAAGCAGCGGAGGCCAAAGCAAGAGTTCTCCAATGCACACT
TGAGCGAGAAATGCGACTTGCTGAGCGAGATCTCAGATGACATGATCGTC
GGTGGTGCGTCGCACTCGACCAGCCCACACCCTACGGAGAAGGCCAAACG
TCAAGGATTACAGGCGAGCCACGGGGGGTCGACGAAGCCGCCAAGCACGT
CGTTGCATTCCTCTACTACAGGGCCGAACCTCGCACAAGCTCGGCGAGTT
TCTGTCGCGGCGGCTGCTGATCCGACCGCGGGCTCCGACGGCCTCCGAAG
AACAAGCAAGCCGCTGGCCCTGGCGCGAAACCATGGCGGGGGCCAGGTGA
GCGGGGGTGGTCCGCTCTTCGGCAGCCAGAAGAGTGGTTCGAGTGCCACA
GGGGGGCGCGGGGTACGCGCGGGGGGCGGGGCGGCAAGCGGCGGTAAGAA
AGGGGTTATGATGATTAACGTGGACGATCTCAACGCGCTTCACGCTGAGA
AGGAAATCACTAAGGAGAGGCTAAAGGGAAAGCCTGGTAGGAAGAAGGCC
AAGCTCAGTCATGAGGACGAGCAAGAAGGGGCGATTGCAGACAAACCCGA
CGGAGTCGTGGACGTCGACGGATTCCAGCAGCCTCCCCAACCCACCACCA
GGGAAGCCGAGGCAGATGAGGAATGTCAGGATGAAAGAGCAACTGAATCC
GACGCGGTGGTCGCAAAACCTGCCACTCCGGAGAAAACACCTATGACGGG
CGAGACGGCGATGGCCATCCCGCAACAGGGCGAGATCGAGGCGATGGCGG
CGATGATGGTTCTGGGTGTTGGGGGCGGAGAAAAAGAGGATGTCGCACCC
TCTTTGCCTGAGCCATTGACGAAGCTTTTAGAAAACGCCAACGCCCTAAA
ACCAGAGGGCAAGACGAAGCTCGAGAGCTTCTTCCAAAAGAAGGCCCCGG
AGGGATTGACGCAAGAGCGGGTCAAGTACCACGAAGAAGTTTCTGACGGA
GCTGAGGGCGAAACGATGCGTGTGACGAGTTATATTCGGCTGGATTACGA
GAAGTGGATATGGGATCGGGTACACAAGAGAAAAGTCGCCAAGTGAATGA
GAACCCTGTTTGCCTTCCTGGGACTTGGTGTGGAACAGCTCGCACCTCTT
CAGAGCCATCTTCTCGCACTCCTACGAACTGCCGACAACGATAAGGATGA
GTGGGTCCAAGTTGCTTCCGGGCTCGTACGCCGAAGCGTCATGCCAAGTG
GAGACGCACGAACGGACGACGGTTCGGAGACAGTCTCCTCTAATATCTTA
CGTAAGGCGGTTACGGAAGTGCTTGATCGATCGGACGAAATACTAGCGGA
GCGCGCGCGCAGGCGTGGAAAACAAAAACCCAAGGGTGATGCCGAAGTAC
TGTCTCTCTGTGAGGCCCCGTATTTTGGCCCACTGGAGGAGCGCTTCGTC
AGCCGGAAGCAGCGGAGGCCAAAGCAAGAGTTCTCCAATGCACACTTGAG
CGAGAAATGCGACTTGCTGAGCGAGATCTCAGATGACATGATCGTCGGTG
GTGCGTCGCACTCGACCAGCCCACACCCTACGGAGAAGGCCAAACGTCAA
GGATTACAGGCGAGCCACGGGGGGTCGACGAAGCCGCCAAGCACGTCGTT
GCATTCCTCTACTACAGGGCCGAACCTCGCACAAGCTCGGCGAGTTTCTG
TCGCGGCGGCTGCTGATCCGACCGCGGGCTCCGACGGCCTCCGAAGAACA
AGCAAGCCGCTGGCCCTGGCGCGAAACCATGGCGGGGGCCAGGTGAGCGG
GGGTGGTCCGCTCTTCGGCAGCCAGAAGAGTGGTTCGAGTGCCACAGGGG
GGCGCGGGGTACGCGCGGGGGGCGGGGCGGCAAGCGGCGGTAAGAAAGGG
GTTATGATGATTAACGTGGACGATCTCAACGCGCTTCACGCTGAGAAGGA
AATCACTAAGGAGAGGCTAAAGGGAAAGCCTGGTAGGAAGAAGGCCAAGC
TCAGTCATGAGGACGAGCAAGAAGGGGCGATTGCAGACAAACCCGACGGA
GTCGTGGACGTCGACGGATTCCAGCAGCCTCCCCAACCCACCACCAGGGA
AGCCGAGGCAGATGAGGAATGTCAGGATGAAAGAGCAACTGAATCCGACG
CGGTGGTCGCAAAACCTGCCACTCCGGAGAAAACACCTATGACGGGCGAG
ACGGCGATGGCCATCCCGCAACAGGGCGAGATCGAGGCGATGGCGGCGAT
GATGGTTCTGGGTGTTGGGGGCGGAGAAAAAGAGGATGTCGCACCCTCTT
TGCCTGAGCCATTGACGAAGCTTTTAGAAAACGCCAACGCCCTAAAACCA
GAGGGCAAGACGAAGCTCGAGAGCTTCTTCCAAAAGAAGGCCCCGGAGGG
ATTGACGCAAGAGCGGGTCAAGTACCACGAAGAAGTTTCTGACGGAGCTG
AGGGCGAAACGATGCGTGTGACGAGTTATATTCGGCTGGATTACGAGAAG
TGGATATGGGATCGGGTACACAAGAGAAAAGTCGCCAAGTGA
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