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Homology
BLAST of mRNA_F-serratus_M_contig1014.233.1 vs. uniprot
Match: D7FQS3_ECTSI (F-box, zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQS3_ECTSI) HSP 1 Score: 92.8 bits (229), Expect = 9.560e-19 Identity = 49/86 (56.98%), Postives = 61/86 (70.93%), Query Frame = 1
Query: 205 EIDGRYRLVVSGLMNTLDACPAMPSETLAASLDDCLRRPS-ATATWSMRATPVLVRGVLSLVTRSPRSLCRAVVPVLVRFVTETEC 459
+ +G + +VSGL LDACPAMP+ TL S++DCLRRPS A W+ +T + V GVLSLV+ SPRSLC+AVV VLVRFV C
Sbjct: 10 QTNGPFLALVSGLQGALDACPAMPTLTLETSIEDCLRRPSPGAAVWAFGSTRMFVSGVLSLVSSSPRSLCQAVVSVLVRFVAGDGC 95
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 5 |
Model size | 525 |
Cds size | 522 |
Stop | 0 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928814.8644123-CDS-F-serratus_M_contig1014:124560..124613 | 1622928814.8644123-CDS-F-serratus_M_contig1014:124560..124613 | Fucus serratus male | CDS | F-serratus_M_contig1014 124561..124613 - |
1690962584.5571098-CDS-F-serratus_M_contig1014:124560..124613 | 1690962584.5571098-CDS-F-serratus_M_contig1014:124560..124613 | Fucus serratus male | CDS | F-serratus_M_contig1014 124561..124613 - |
1622928814.87984-CDS-F-serratus_M_contig1014:125019..125281 | 1622928814.87984-CDS-F-serratus_M_contig1014:125019..125281 | Fucus serratus male | CDS | F-serratus_M_contig1014 125020..125281 - |
1690962584.566124-CDS-F-serratus_M_contig1014:125019..125281 | 1690962584.566124-CDS-F-serratus_M_contig1014:125019..125281 | Fucus serratus male | CDS | F-serratus_M_contig1014 125020..125281 - |
1622928814.8983164-CDS-F-serratus_M_contig1014:125649..125733 | 1622928814.8983164-CDS-F-serratus_M_contig1014:125649..125733 | Fucus serratus male | CDS | F-serratus_M_contig1014 125650..125733 - |
1690962584.574507-CDS-F-serratus_M_contig1014:125649..125733 | 1690962584.574507-CDS-F-serratus_M_contig1014:125649..125733 | Fucus serratus male | CDS | F-serratus_M_contig1014 125650..125733 - |
1622928814.9131074-CDS-F-serratus_M_contig1014:126659..126720 | 1622928814.9131074-CDS-F-serratus_M_contig1014:126659..126720 | Fucus serratus male | CDS | F-serratus_M_contig1014 126660..126720 - |
1690962584.5831585-CDS-F-serratus_M_contig1014:126659..126720 | 1690962584.5831585-CDS-F-serratus_M_contig1014:126659..126720 | Fucus serratus male | CDS | F-serratus_M_contig1014 126660..126720 - |
1622928814.9304824-CDS-F-serratus_M_contig1014:129836..129898 | 1622928814.9304824-CDS-F-serratus_M_contig1014:129836..129898 | Fucus serratus male | CDS | F-serratus_M_contig1014 129837..129898 - |
1690962584.5982895-CDS-F-serratus_M_contig1014:129836..129898 | 1690962584.5982895-CDS-F-serratus_M_contig1014:129836..129898 | Fucus serratus male | CDS | F-serratus_M_contig1014 129837..129898 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1014.233.1 >prot_F-serratus_M_contig1014.233.1 ID=prot_F-serratus_M_contig1014.233.1|Name=mRNA_F-serratus_M_contig1014.233.1|organism=Fucus serratus male|type=polypeptide|length=174bp
SWVHFHFEPVRSVINHSCCDWASPAAFISGLMAEVVRALIKVQSKLPVST PAILHVLLHRLAALSSSKEIDGRYRLVVSGLMNTLDACPAMPSETLAASL DDCLRRPSATATWSMRATPVLVRGVLSLVTRSPRSLCRAVVPVLVRFVTE TECGMALPSSSADSMTTESPKKLS back to topmRNA from alignment at F-serratus_M_contig1014:124560..129898- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig1014.233.1 ID=mRNA_F-serratus_M_contig1014.233.1|Name=mRNA_F-serratus_M_contig1014.233.1|organism=Fucus serratus male|type=mRNA|length=5339bp|location=Sequence derived from alignment at F-serratus_M_contig1014:124560..129898- (Fucus serratus male) TCATGGGTCCACTTCCATTTCGAGCCAGTGCGCTCCGTGATCAACCACAG
CTGCTGCGATTGGTGGGTTTATCGCTTTTCGCAACTGTTGCCGGCATAGC
GCTCTGGGAGATGAACTATTACCGGCAGTGCAAACAGTCTTCACAGGACA
AAACAGTACTAATTATCTAGCTAATTAATTAATGTTTTAAAGTACGTGGA
ACAGTCTACACAGATGGTTCTGAGAAAAATCTAAACGCATCTATACTGTA
AAACCTGCTGACGATCCACCCAGCTCAGCTGGGTCAGGTTGGAAATTCAA
AACTTTTACCCTAACATTGCCTGCAAGGACAATAACTTTTCATCGAATTT
AATCTGGTTCCCCGATGGTGTTAGCATAGATAGAGTTTACAGTATTAACT
CAATGATTGACAACGTGCGACTGGATTACGGAATAATACTGTTAAAGAGA
AATATGAACGCGTCTAGACCTTCTGAGCATCCCTCAGTCAGGGGGGGAAA
TGTCAAAACGTATAGGTGGGATCATAGACTGCAGAGACAAAACCTCTACA
TGGCATTTAAACAGGTTCCCCGATGGAAGTAACATTAGGTCAACAGTGTA
ATGTCAGAGAGAAGCCCACCGTTGTACTGTTGTACACTTACATTAATCGC
CATGCAGGGACACCAAACAATTCAAAACAATTAGTACATAATTAAATACG
GAAGTAGGTTGTTGTTGTTTCACACATTCAGCGTATTGCCCTTGCAACTG
AAGAAACTACGGTGACACACAACAAGTCAGCCATGTATCTATGTATCAAA
TGCCAAGCCCGCTCGTGGTCACAAAGAGGTACGAAGGTCAACGGGTCACA
TCATGGTGACCCCGGTACTCAAACGAACAGGGATCCAAATCGCGACAAAA
TCCATGCCAGGTCCAACCAACCGAGAACATCGGAAACGTATCGACAAAAC
GATTTCTTTGGGCACGAACTACAGTTTTTACTGTCTGGAGTGCTGCTATA
ACAGTAACAGTAACAGTAGTATTTCAGAATCTGATTTACGAGCTACAGAG
AAGATTGTCTGATGTGCTGCCCACCCAACAAAGTCATCAAAAGTGATACA
ACACGTTTCTAGCTCTTAGTATAGGAGGTTTACACGAAGACAAGTTATTG
GACATTTTATAAGCAATGGCAACGACCAATGTCCAAACGATTCATCAACC
CCTCTTATTTCATGTCGAGAGCAACCTCGATCGACTACTAATATTAATAC
CAGTATTGGAATAGTTTATCCCCATCACCCATCACCCTTCCAGTGTATTT
TAAAGAGGAACCTGAACGCCTCTAGACCTTCTGAGCATCCCCCAGTCAGG
GGGGAAAATATCAAAACGTTTAGGGGGGATCATAGGCTGCAAAGACTAAG
CCTCTTGACATTTAAGCGGGTTCCCCGATGGTAGTAACATTGGTTCAACA
GTATAATATCGGGGAGAAGCCCACCGTTGTATTGTACACTTACATTGATC
ACCATGCAGGGACACCACAATGTAGTACATAAATAGATAGGCTATTATAG
TAATAATTTACGGCAATAGTGGCATCGAACCATACAACAGGAGGGGCTTA
AAGAACACAAGAAACGTTATGATATTATAATTGGTCAAGAGAGTAGTACA
TTTTCGTCTTACAACTATTAATGGTAATAGTCCATGGGTACTTTTTACCG
TGCCATGTATTCAGTACGCGTTTGTATTTCACACTGTGCGTTACATTTGT
GATATTAACAGCAGGATGAGTAAGGCACAGGATAGCTAGTGGTGGTGGAT
AATACATAGGGTTTGGGTTAAGGATTGAAACAGCATAGTAATAGGGCAGA
GAGGACCACCATCATAGATACCTTATCTTCGACATAATACAGACAGTACG
AAACATCGGTTTTGACCTGAAAGTGAAGGATGTTTGGTGTCTTTAATAAA
GAAAAATCTGAACGCATCTAGACCTTCTTTTTTTTATTCCTCTTGTAAGT
GTAACCCATGGAATGATGATATCTGGGGCACCAATGATATGATGATATAA
ATAAATGGACGCCGCCGCGGAACTCGGGAGGAATTCCGTAAGTAAGCACC
AGATTCAGCCTGAGTATGGAGATGAGCAGGCTGACGCCGGACGGGACTGC
CGAACCCGTCTCGCGAGGCCAAATTCTCAGGCGTGAACGCGGACAGGGAA
ATATTCATTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGCAACCTTAC
CTGGTTGATCCATACTCTTGCTATATGTGATGACCATACATACCGGTTCT
ATAATCGTCTGTGATACCTGATGATATCGATCCCTCGCTCAGCATGAACC
CTCCCGTATAAGCCCCTTTCTCCCAGAGACTTTCCATTAGTTTACCCTGG
CAGGTGAGAATATTGTCTGCAAGGACAAGAACTTTTCGTGGAATTCAATC
TGGTTATGTTCCTCGATGGTAGTAGGATAATAGGGTCTACAGTATGTTTG
GTCTGCACTTCACAGTATAATATCGAGGAGAAAGCCACCGTTATACTGTA
CAGTTACATTAATCCCTGTATAGTATACTGAGTATAACATACAGGGACAC
CAAAACTGAGGCAAAAGCACACGATGAAATGAACCTGGATACAATACATT
GACTCAGTTACGTTATATTGGGTTACAGTACAGTATTGGGATCGGGTTCG
AGTCTTGGTGAATCGGAGTCGATTGTAGAATATTCTATTTGAATAGCCGC
ATAGGTGTCTACACTATTATTGATATATTACTAGCCATCAAACAAGGTAT
AGGTTGACGAGGAGTTGGACATAAATTCAAAAGTATTATTGTCACTACTC
GTACAGGAAATGACTGTACATCACATTTTAAACGGCAACAACTTTATGAG
GGTTTCTAAAAAATGAAATCACCATTTTTCCGGAGGCCATCGTATGGAGC
TGAAATCGGCCATTTTTTACTATTAATAGTCCCTAATTTTGGGGAGAGGC
CGTGGCTTCTTCTAAAGAGCGCAACGCTGGTTCGATCGAGTTTCGGTAGA
GATGGTTGCCCCCGAAGGATGCTTGGCAGGTGATGTCCGACCAATTATTT
TGCACTCCCGGAATCAGTTTCATAATATCATCCAAAACTCTCTCCTTTGA
TTTTCGTGCATAACGACCAAATTCTCAGGGCGTCCCCCGCAGCCTTTATT
TCTGGGCTAATGGCGGAGGTCGTCCGAGCCCTGATCAAAGTAAGAGCCAA
TCAAATTACTCTTCAACACGGAGTGGTGGGGAGTTGGGGATTGAGAGCCT
TCGGCACATGCCTTACGCCGTCTGTCGCTGTCCGTATTTCGTCAATCCTT
AGCACACAGTGCAGCGGCAGAGCCTAGCCCATTCGCGATAGCCCTGAATG
ATAAACTTTTCATCATCTTGTATGTATGTATGTAGGTATGTATGGTCACA
CATATTGCAAGAGTAAGGATCGACCGGGCAAGGTTGCCCATTCTGCTCGT
GGTCAGCTGAACAGGGAAAACAACTTTTTCCCTGTCTCCGTTCGCGCCTG
AAAATTTGTTTTCGCGAGACGGGTTCGGCAGTCCCGTCCCGCGTTAGCCT
GCTCATCTCCATACTCAGGCTGAATCTGGCGCTTACTTACGAGATTCCTC
CGGATTTCCGTGGCGGCGTCCATTTATTTATTTAATTGTCGCCCGAGTGG
GCTATTAGGTAATCTGTAGACCTGCTAGTGCTGAAGTCGTGAGTTCGATT
CTTACCAAAGTAAGATTCGTGTTATTTCTTGCTTAGTTGCGGAAAGCGTT
GCCACACTAAGTGAAACTCAACCATTGGTTGACGAGTTGTAAGATTGATG
AACTTACATCGCGATACAAAATCGTAAGGGCGTGAACCGGGGAGAGATTG
GAAAATCCTTGGTGACCATAGGCAGGATGGTAACGATGAGGTCCATCAGC
TATAAGATACGCTATCGGGTTAGTCCCGAGTTTATCGGGCACGCAATTGC
GTACCGATTGCGTTCTCTACGGGTGCTGCCTTTCCATCACCATGTATAAG
TTAATATGCGGCTCTCTTCCCCACACCTACTATTGGTATGAAGTGGGTAA
CCAGGTTATCAGATCCCGATCCGTCACGACTGTATTGGGTGCTCTCTCTG
ACTGCGCGCGCGTAGGTTCAGTCAAAACTTCCTGTTTCTACCCCTGCCAT
CCTACACGTGTTGCTCCATCGCCTGGCTGCCCTCAGCTCCAGCAAAGAGG
TGGGTCGAACGCGGCGGCGCTTTGACCTTTGATTGAACAGTCCCTCATTC
GTCGTCTTGCTCAATGGCGAATCCACCCTCACGACCGCACATTCTAATAC
CGGTTTCAGCACCGCATTGCAGGCTACTCGTAAATGCGATATACTTCGTA
AATGGTCAACCCGGCGCGGGACTGTTGAGTTTGAGGCTTACATGTGTTTT
TGTAGATACCTAGTTTGATCTATTCATAGCCTATTCTTTACTGTAACAGT
TAATGCCGGCACCGTCCACGAAGCTTCTCTCTTACACCGTCCACCGCTCT
TAGCCTGATTTAAGCTTTCCGTGTGGTTTGAATACGATGAATCTCCCAAA
ATGCCCAACGGTAGCAGATCGATGGACGCTACAGGCTGGTCGTTTCTGGG
CTGATGAATACTCTCGACGCCTGCCCTGCCATGCCGAGCGAAACCCTGGC
AGCTTCCCTCGATGACTGCCTGCGACGGCCCTCAGCCACCGCGACCTGGT
CGATGCGCGCCACGCCTGTATTGGTTCGCGGGGTGCTGTCGCTCGTAACA
CGATCCCCTAGATCACTGTGTCGAGCCGTAGTCCCGGTTCTTGTGCGCTT
CGTCACCGAGACCGAATGCGGAATGGCATGTGAGTGGGGTGGTCCCGTCG
TTCACACGTGCTTGGCAGAAATAGAAATCCGTGCACTTAGCGCGAGTACT
AACTCCGGAAGGAAGCAAAGTGTCGTTTTGTCTTTCTTTTTGTAAGACTG
CACATTCGCTTAAGTGTGGAGAATAAGCGGGCTGGCGCAGGACGGGACGG
GACGGGACGGCCGAACCTGCCTCGGGAGAGAAAATTCTCAGGCGTGAATG
AGGACAGGGGGGAAATAATGTTTAGCCGACCACGAGCAGGATTGGCACCC
ATAGCCGATTGATGCCCAGTCTTCTATATGCGATGGCTATACATAATTCG
GCGCGAAAAGTGCTCGACAGGTTCCTCTCCCGCACTCTCGACTGATGTTT
TCGGCGTCTCTCACTGGGCGCAATCGACCGCGCAGTGCCTTCATCATCTG
CCGACTCAATGACGACGGAGAGTCCAAAGAAACTTTCGC back to topCoding sequence (CDS) from alignment at F-serratus_M_contig1014:124560..129898- >mRNA_F-serratus_M_contig1014.233.1 ID=mRNA_F-serratus_M_contig1014.233.1|Name=mRNA_F-serratus_M_contig1014.233.1|organism=Fucus serratus male|type=CDS|length=1044bp|location=Sequence derived from alignment at F-serratus_M_contig1014:124560..129898- (Fucus serratus male) TCATGGGTCCACTTCCATTTCGAGCCAGTGCGCTCCGTGATCAACCACAG CTGCTGCGATTGTCATGGGTCCACTTCCATTTCGAGCCAGTGCGCTCCGT GATCAACCACAGCTGCTGCGATTGGGCGTCCCCCGCAGCCTTTATTTCTG GGCTAATGGCGGAGGTCGTCCGAGCCCTGATCAAAGGCGTCCCCCGCAGC CTTTATTTCTGGGCTAATGGCGGAGGTCGTCCGAGCCCTGATCAAAGTTC AGTCAAAACTTCCTGTTTCTACCCCTGCCATCCTACACGTGTTGCTCCAT CGCCTGGCTGCCCTCAGCTCCAGCAAAGAGGTTCAGTCAAAACTTCCTGT TTCTACCCCTGCCATCCTACACGTGTTGCTCCATCGCCTGGCTGCCCTCA GCTCCAGCAAAGAGATCGATGGACGCTACAGGCTGGTCGTTTCTGGGCTG ATGAATACTCTCGACGCCTGCCCTGCCATGCCGAGCGAAACCCTGGCAGC TTCCCTCGATGACTGCCTGCGACGGCCCTCAGCCACCGCGACCTGGTCGA TGCGCGCCACGCCTGTATTGGTTCGCGGGGTGCTGTCGCTCGTAACACGA TCCCCTAGATCACTGTGTCGAGCCGTAGTCCCGGTTCTTGTGCGCTTCGT CACCGAGACCGAATGCGGAATGGCATATCGATGGACGCTACAGGCTGGTC GTTTCTGGGCTGATGAATACTCTCGACGCCTGCCCTGCCATGCCGAGCGA AACCCTGGCAGCTTCCCTCGATGACTGCCTGCGACGGCCCTCAGCCACCG CGACCTGGTCGATGCGCGCCACGCCTGTATTGGTTCGCGGGGTGCTGTCG CTCGTAACACGATCCCCTAGATCACTGTGTCGAGCCGTAGTCCCGGTTCT TGTGCGCTTCGTCACCGAGACCGAATGCGGAATGGCATTGCCTTCATCAT CTGCCGACTCAATGACGACGGAGAGTCCAAAGAAACTTTCGTGCCTTCAT CATCTGCCGACTCAATGACGACGGAGAGTCCAAAGAAACTTTCG back to top
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