mRNA_F-serratus_M_contig1014.233.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1014.233.1
Unique NamemRNA_F-serratus_M_contig1014.233.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1014.233.1 vs. uniprot
Match: D7FQS3_ECTSI (F-box, zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQS3_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 9.560e-19
Identity = 49/86 (56.98%), Postives = 61/86 (70.93%), Query Frame = 1 
Query:  205 EIDGRYRLVVSGLMNTLDACPAMPSETLAASLDDCLRRPS-ATATWSMRATPVLVRGVLSLVTRSPRSLCRAVVPVLVRFVTETEC 459
            + +G +  +VSGL   LDACPAMP+ TL  S++DCLRRPS   A W+  +T + V GVLSLV+ SPRSLC+AVV VLVRFV    C
Sbjct:   10 QTNGPFLALVSGLQGALDACPAMPTLTLETSIEDCLRRPSPGAAVWAFGSTRMFVSGVLSLVSSSPRSLCQAVVSVLVRFVAGDGC 95
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1014.233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQS3_ECTSI9.560e-1956.98F-box, zinc finger protein n=1 Tax=Ectocarpus sili... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1014contigF-serratus_M_contig1014:124560..129898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size525
Cds size522
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1014.233.1prot_F-serratus_M_contig1014.233.1Fucus serratus malepolypeptideF-serratus_M_contig1014 124561..129898 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928814.8644123-CDS-F-serratus_M_contig1014:124560..1246131622928814.8644123-CDS-F-serratus_M_contig1014:124560..124613Fucus serratus maleCDSF-serratus_M_contig1014 124561..124613 -
1690962584.5571098-CDS-F-serratus_M_contig1014:124560..1246131690962584.5571098-CDS-F-serratus_M_contig1014:124560..124613Fucus serratus maleCDSF-serratus_M_contig1014 124561..124613 -
1622928814.87984-CDS-F-serratus_M_contig1014:125019..1252811622928814.87984-CDS-F-serratus_M_contig1014:125019..125281Fucus serratus maleCDSF-serratus_M_contig1014 125020..125281 -
1690962584.566124-CDS-F-serratus_M_contig1014:125019..1252811690962584.566124-CDS-F-serratus_M_contig1014:125019..125281Fucus serratus maleCDSF-serratus_M_contig1014 125020..125281 -
1622928814.8983164-CDS-F-serratus_M_contig1014:125649..1257331622928814.8983164-CDS-F-serratus_M_contig1014:125649..125733Fucus serratus maleCDSF-serratus_M_contig1014 125650..125733 -
1690962584.574507-CDS-F-serratus_M_contig1014:125649..1257331690962584.574507-CDS-F-serratus_M_contig1014:125649..125733Fucus serratus maleCDSF-serratus_M_contig1014 125650..125733 -
1622928814.9131074-CDS-F-serratus_M_contig1014:126659..1267201622928814.9131074-CDS-F-serratus_M_contig1014:126659..126720Fucus serratus maleCDSF-serratus_M_contig1014 126660..126720 -
1690962584.5831585-CDS-F-serratus_M_contig1014:126659..1267201690962584.5831585-CDS-F-serratus_M_contig1014:126659..126720Fucus serratus maleCDSF-serratus_M_contig1014 126660..126720 -
1622928814.9304824-CDS-F-serratus_M_contig1014:129836..1298981622928814.9304824-CDS-F-serratus_M_contig1014:129836..129898Fucus serratus maleCDSF-serratus_M_contig1014 129837..129898 -
1690962584.5982895-CDS-F-serratus_M_contig1014:129836..1298981690962584.5982895-CDS-F-serratus_M_contig1014:129836..129898Fucus serratus maleCDSF-serratus_M_contig1014 129837..129898 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1014.233.1

>prot_F-serratus_M_contig1014.233.1 ID=prot_F-serratus_M_contig1014.233.1|Name=mRNA_F-serratus_M_contig1014.233.1|organism=Fucus serratus male|type=polypeptide|length=174bp
SWVHFHFEPVRSVINHSCCDWASPAAFISGLMAEVVRALIKVQSKLPVST
PAILHVLLHRLAALSSSKEIDGRYRLVVSGLMNTLDACPAMPSETLAASL
DDCLRRPSATATWSMRATPVLVRGVLSLVTRSPRSLCRAVVPVLVRFVTE
TECGMALPSSSADSMTTESPKKLS
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mRNA from alignment at F-serratus_M_contig1014:124560..129898-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1014.233.1 ID=mRNA_F-serratus_M_contig1014.233.1|Name=mRNA_F-serratus_M_contig1014.233.1|organism=Fucus serratus male|type=mRNA|length=5339bp|location=Sequence derived from alignment at F-serratus_M_contig1014:124560..129898- (Fucus serratus male)
TCATGGGTCCACTTCCATTTCGAGCCAGTGCGCTCCGTGATCAACCACAG
CTGCTGCGATTGGTGGGTTTATCGCTTTTCGCAACTGTTGCCGGCATAGC
GCTCTGGGAGATGAACTATTACCGGCAGTGCAAACAGTCTTCACAGGACA
AAACAGTACTAATTATCTAGCTAATTAATTAATGTTTTAAAGTACGTGGA
ACAGTCTACACAGATGGTTCTGAGAAAAATCTAAACGCATCTATACTGTA
AAACCTGCTGACGATCCACCCAGCTCAGCTGGGTCAGGTTGGAAATTCAA
AACTTTTACCCTAACATTGCCTGCAAGGACAATAACTTTTCATCGAATTT
AATCTGGTTCCCCGATGGTGTTAGCATAGATAGAGTTTACAGTATTAACT
CAATGATTGACAACGTGCGACTGGATTACGGAATAATACTGTTAAAGAGA
AATATGAACGCGTCTAGACCTTCTGAGCATCCCTCAGTCAGGGGGGGAAA
TGTCAAAACGTATAGGTGGGATCATAGACTGCAGAGACAAAACCTCTACA
TGGCATTTAAACAGGTTCCCCGATGGAAGTAACATTAGGTCAACAGTGTA
ATGTCAGAGAGAAGCCCACCGTTGTACTGTTGTACACTTACATTAATCGC
CATGCAGGGACACCAAACAATTCAAAACAATTAGTACATAATTAAATACG
GAAGTAGGTTGTTGTTGTTTCACACATTCAGCGTATTGCCCTTGCAACTG
AAGAAACTACGGTGACACACAACAAGTCAGCCATGTATCTATGTATCAAA
TGCCAAGCCCGCTCGTGGTCACAAAGAGGTACGAAGGTCAACGGGTCACA
TCATGGTGACCCCGGTACTCAAACGAACAGGGATCCAAATCGCGACAAAA
TCCATGCCAGGTCCAACCAACCGAGAACATCGGAAACGTATCGACAAAAC
GATTTCTTTGGGCACGAACTACAGTTTTTACTGTCTGGAGTGCTGCTATA
ACAGTAACAGTAACAGTAGTATTTCAGAATCTGATTTACGAGCTACAGAG
AAGATTGTCTGATGTGCTGCCCACCCAACAAAGTCATCAAAAGTGATACA
ACACGTTTCTAGCTCTTAGTATAGGAGGTTTACACGAAGACAAGTTATTG
GACATTTTATAAGCAATGGCAACGACCAATGTCCAAACGATTCATCAACC
CCTCTTATTTCATGTCGAGAGCAACCTCGATCGACTACTAATATTAATAC
CAGTATTGGAATAGTTTATCCCCATCACCCATCACCCTTCCAGTGTATTT
TAAAGAGGAACCTGAACGCCTCTAGACCTTCTGAGCATCCCCCAGTCAGG
GGGGAAAATATCAAAACGTTTAGGGGGGATCATAGGCTGCAAAGACTAAG
CCTCTTGACATTTAAGCGGGTTCCCCGATGGTAGTAACATTGGTTCAACA
GTATAATATCGGGGAGAAGCCCACCGTTGTATTGTACACTTACATTGATC
ACCATGCAGGGACACCACAATGTAGTACATAAATAGATAGGCTATTATAG
TAATAATTTACGGCAATAGTGGCATCGAACCATACAACAGGAGGGGCTTA
AAGAACACAAGAAACGTTATGATATTATAATTGGTCAAGAGAGTAGTACA
TTTTCGTCTTACAACTATTAATGGTAATAGTCCATGGGTACTTTTTACCG
TGCCATGTATTCAGTACGCGTTTGTATTTCACACTGTGCGTTACATTTGT
GATATTAACAGCAGGATGAGTAAGGCACAGGATAGCTAGTGGTGGTGGAT
AATACATAGGGTTTGGGTTAAGGATTGAAACAGCATAGTAATAGGGCAGA
GAGGACCACCATCATAGATACCTTATCTTCGACATAATACAGACAGTACG
AAACATCGGTTTTGACCTGAAAGTGAAGGATGTTTGGTGTCTTTAATAAA
GAAAAATCTGAACGCATCTAGACCTTCTTTTTTTTATTCCTCTTGTAAGT
GTAACCCATGGAATGATGATATCTGGGGCACCAATGATATGATGATATAA
ATAAATGGACGCCGCCGCGGAACTCGGGAGGAATTCCGTAAGTAAGCACC
AGATTCAGCCTGAGTATGGAGATGAGCAGGCTGACGCCGGACGGGACTGC
CGAACCCGTCTCGCGAGGCCAAATTCTCAGGCGTGAACGCGGACAGGGAA
ATATTCATTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGCAACCTTAC
CTGGTTGATCCATACTCTTGCTATATGTGATGACCATACATACCGGTTCT
ATAATCGTCTGTGATACCTGATGATATCGATCCCTCGCTCAGCATGAACC
CTCCCGTATAAGCCCCTTTCTCCCAGAGACTTTCCATTAGTTTACCCTGG
CAGGTGAGAATATTGTCTGCAAGGACAAGAACTTTTCGTGGAATTCAATC
TGGTTATGTTCCTCGATGGTAGTAGGATAATAGGGTCTACAGTATGTTTG
GTCTGCACTTCACAGTATAATATCGAGGAGAAAGCCACCGTTATACTGTA
CAGTTACATTAATCCCTGTATAGTATACTGAGTATAACATACAGGGACAC
CAAAACTGAGGCAAAAGCACACGATGAAATGAACCTGGATACAATACATT
GACTCAGTTACGTTATATTGGGTTACAGTACAGTATTGGGATCGGGTTCG
AGTCTTGGTGAATCGGAGTCGATTGTAGAATATTCTATTTGAATAGCCGC
ATAGGTGTCTACACTATTATTGATATATTACTAGCCATCAAACAAGGTAT
AGGTTGACGAGGAGTTGGACATAAATTCAAAAGTATTATTGTCACTACTC
GTACAGGAAATGACTGTACATCACATTTTAAACGGCAACAACTTTATGAG
GGTTTCTAAAAAATGAAATCACCATTTTTCCGGAGGCCATCGTATGGAGC
TGAAATCGGCCATTTTTTACTATTAATAGTCCCTAATTTTGGGGAGAGGC
CGTGGCTTCTTCTAAAGAGCGCAACGCTGGTTCGATCGAGTTTCGGTAGA
GATGGTTGCCCCCGAAGGATGCTTGGCAGGTGATGTCCGACCAATTATTT
TGCACTCCCGGAATCAGTTTCATAATATCATCCAAAACTCTCTCCTTTGA
TTTTCGTGCATAACGACCAAATTCTCAGGGCGTCCCCCGCAGCCTTTATT
TCTGGGCTAATGGCGGAGGTCGTCCGAGCCCTGATCAAAGTAAGAGCCAA
TCAAATTACTCTTCAACACGGAGTGGTGGGGAGTTGGGGATTGAGAGCCT
TCGGCACATGCCTTACGCCGTCTGTCGCTGTCCGTATTTCGTCAATCCTT
AGCACACAGTGCAGCGGCAGAGCCTAGCCCATTCGCGATAGCCCTGAATG
ATAAACTTTTCATCATCTTGTATGTATGTATGTAGGTATGTATGGTCACA
CATATTGCAAGAGTAAGGATCGACCGGGCAAGGTTGCCCATTCTGCTCGT
GGTCAGCTGAACAGGGAAAACAACTTTTTCCCTGTCTCCGTTCGCGCCTG
AAAATTTGTTTTCGCGAGACGGGTTCGGCAGTCCCGTCCCGCGTTAGCCT
GCTCATCTCCATACTCAGGCTGAATCTGGCGCTTACTTACGAGATTCCTC
CGGATTTCCGTGGCGGCGTCCATTTATTTATTTAATTGTCGCCCGAGTGG
GCTATTAGGTAATCTGTAGACCTGCTAGTGCTGAAGTCGTGAGTTCGATT
CTTACCAAAGTAAGATTCGTGTTATTTCTTGCTTAGTTGCGGAAAGCGTT
GCCACACTAAGTGAAACTCAACCATTGGTTGACGAGTTGTAAGATTGATG
AACTTACATCGCGATACAAAATCGTAAGGGCGTGAACCGGGGAGAGATTG
GAAAATCCTTGGTGACCATAGGCAGGATGGTAACGATGAGGTCCATCAGC
TATAAGATACGCTATCGGGTTAGTCCCGAGTTTATCGGGCACGCAATTGC
GTACCGATTGCGTTCTCTACGGGTGCTGCCTTTCCATCACCATGTATAAG
TTAATATGCGGCTCTCTTCCCCACACCTACTATTGGTATGAAGTGGGTAA
CCAGGTTATCAGATCCCGATCCGTCACGACTGTATTGGGTGCTCTCTCTG
ACTGCGCGCGCGTAGGTTCAGTCAAAACTTCCTGTTTCTACCCCTGCCAT
CCTACACGTGTTGCTCCATCGCCTGGCTGCCCTCAGCTCCAGCAAAGAGG
TGGGTCGAACGCGGCGGCGCTTTGACCTTTGATTGAACAGTCCCTCATTC
GTCGTCTTGCTCAATGGCGAATCCACCCTCACGACCGCACATTCTAATAC
CGGTTTCAGCACCGCATTGCAGGCTACTCGTAAATGCGATATACTTCGTA
AATGGTCAACCCGGCGCGGGACTGTTGAGTTTGAGGCTTACATGTGTTTT
TGTAGATACCTAGTTTGATCTATTCATAGCCTATTCTTTACTGTAACAGT
TAATGCCGGCACCGTCCACGAAGCTTCTCTCTTACACCGTCCACCGCTCT
TAGCCTGATTTAAGCTTTCCGTGTGGTTTGAATACGATGAATCTCCCAAA
ATGCCCAACGGTAGCAGATCGATGGACGCTACAGGCTGGTCGTTTCTGGG
CTGATGAATACTCTCGACGCCTGCCCTGCCATGCCGAGCGAAACCCTGGC
AGCTTCCCTCGATGACTGCCTGCGACGGCCCTCAGCCACCGCGACCTGGT
CGATGCGCGCCACGCCTGTATTGGTTCGCGGGGTGCTGTCGCTCGTAACA
CGATCCCCTAGATCACTGTGTCGAGCCGTAGTCCCGGTTCTTGTGCGCTT
CGTCACCGAGACCGAATGCGGAATGGCATGTGAGTGGGGTGGTCCCGTCG
TTCACACGTGCTTGGCAGAAATAGAAATCCGTGCACTTAGCGCGAGTACT
AACTCCGGAAGGAAGCAAAGTGTCGTTTTGTCTTTCTTTTTGTAAGACTG
CACATTCGCTTAAGTGTGGAGAATAAGCGGGCTGGCGCAGGACGGGACGG
GACGGGACGGCCGAACCTGCCTCGGGAGAGAAAATTCTCAGGCGTGAATG
AGGACAGGGGGGAAATAATGTTTAGCCGACCACGAGCAGGATTGGCACCC
ATAGCCGATTGATGCCCAGTCTTCTATATGCGATGGCTATACATAATTCG
GCGCGAAAAGTGCTCGACAGGTTCCTCTCCCGCACTCTCGACTGATGTTT
TCGGCGTCTCTCACTGGGCGCAATCGACCGCGCAGTGCCTTCATCATCTG
CCGACTCAATGACGACGGAGAGTCCAAAGAAACTTTCGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1014:124560..129898-

>mRNA_F-serratus_M_contig1014.233.1 ID=mRNA_F-serratus_M_contig1014.233.1|Name=mRNA_F-serratus_M_contig1014.233.1|organism=Fucus serratus male|type=CDS|length=1044bp|location=Sequence derived from alignment at F-serratus_M_contig1014:124560..129898- (Fucus serratus male)
TCATGGGTCCACTTCCATTTCGAGCCAGTGCGCTCCGTGATCAACCACAG
CTGCTGCGATTGTCATGGGTCCACTTCCATTTCGAGCCAGTGCGCTCCGT
GATCAACCACAGCTGCTGCGATTGGGCGTCCCCCGCAGCCTTTATTTCTG
GGCTAATGGCGGAGGTCGTCCGAGCCCTGATCAAAGGCGTCCCCCGCAGC
CTTTATTTCTGGGCTAATGGCGGAGGTCGTCCGAGCCCTGATCAAAGTTC
AGTCAAAACTTCCTGTTTCTACCCCTGCCATCCTACACGTGTTGCTCCAT
CGCCTGGCTGCCCTCAGCTCCAGCAAAGAGGTTCAGTCAAAACTTCCTGT
TTCTACCCCTGCCATCCTACACGTGTTGCTCCATCGCCTGGCTGCCCTCA
GCTCCAGCAAAGAGATCGATGGACGCTACAGGCTGGTCGTTTCTGGGCTG
ATGAATACTCTCGACGCCTGCCCTGCCATGCCGAGCGAAACCCTGGCAGC
TTCCCTCGATGACTGCCTGCGACGGCCCTCAGCCACCGCGACCTGGTCGA
TGCGCGCCACGCCTGTATTGGTTCGCGGGGTGCTGTCGCTCGTAACACGA
TCCCCTAGATCACTGTGTCGAGCCGTAGTCCCGGTTCTTGTGCGCTTCGT
CACCGAGACCGAATGCGGAATGGCATATCGATGGACGCTACAGGCTGGTC
GTTTCTGGGCTGATGAATACTCTCGACGCCTGCCCTGCCATGCCGAGCGA
AACCCTGGCAGCTTCCCTCGATGACTGCCTGCGACGGCCCTCAGCCACCG
CGACCTGGTCGATGCGCGCCACGCCTGTATTGGTTCGCGGGGTGCTGTCG
CTCGTAACACGATCCCCTAGATCACTGTGTCGAGCCGTAGTCCCGGTTCT
TGTGCGCTTCGTCACCGAGACCGAATGCGGAATGGCATTGCCTTCATCAT
CTGCCGACTCAATGACGACGGAGAGTCCAAAGAAACTTTCGTGCCTTCAT
CATCTGCCGACTCAATGACGACGGAGAGTCCAAAGAAACTTTCG
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