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Homology
BLAST of mRNA_F-serratus_M_contig1014.232.1 vs. uniprot
Match: D7FQS3_ECTSI (F-box, zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQS3_ECTSI) HSP 1 Score: 303 bits (776), Expect = 1.450e-92 Identity = 178/358 (49.72%), Postives = 218/358 (60.89%), Query Frame = 3
Query: 3 SLCRALVLLLTRPPRRSTSTTYVPASAGSLLEIIFDSDACPLASLPRPLARAAVDTLRREGFLRLTRMEALLESPILRSSRISRTGETKSTSAMENS---PSKDDVTE-------GFDFRAADSAFRRSWSMVASGVDQYIPYSLEMNVEEDGESAG-TCPPDEGYDSNGEVYDWDNFDSSPCVGDRWTRVPDEVTLRVFSFMTPKRLSRLSCVNRAWRELLGVVSIWRPFFEARWPLKSLKSEADLTGVSKMLVEAADRTRGGERKYKRRRRY----VVHWDVSAEGDGHVEPT--RDWMALYRGRHQAELATRGRCASKTSFPWMVCPFLGCVSYLKSEFAVKRHIQTHKPQRKAR 1025
SL AL LLLTRP R ++ VP + G+LLEI+FDSD PL+ +PRPLA AA+D L+ G L+L R + LL P SR GE + E S P VTE G DF+ A AFR SWS+ A+GVD +P + G+ G + D D + G+ W RVPDEVTLRVFSFMTPKR+ RL+CV+RAWRELL V +WRPFFEARWPL ++ S+ DL GVS L+ A+ + KRRRR+ VVHW S + G +P RDWMALYR RH+AE A RGR A+KT FPW+VCPFLGCVS LKSEFAVKRH++THK R+ R
Sbjct: 347 SLSHALALLLTRPKRGGVCSSIVPETVGNLLEIVFDSDPRPLSCVPRPLAEAAIDVLKEAGHLQLARSDELLRLPWG-----SRRGEPNAAGRREESKLGPVAATVTEEGASFASGIDFQRASLAFRNSWSLAAAGVDMQLPSTNHSGRSRRGDGGGDSXXXXXXXXXXXXSADGDVDGARAIAGNGWGRVPDEVTLRVFSFMTPKRVCRLACVDRAWRELLTVSGVWRPFFEARWPLTAIGSDLDLVGVSDRLL--AEGLGSARKNAKRRRRHGKIGVVHWRTSEDTSGQQQPLLERDWMALYRDRHRAERAARGRFAAKTEFPWLVCPFLGCVSSLKSEFAVKRHVRTHKRPREKR 697
BLAST of mRNA_F-serratus_M_contig1014.232.1 vs. uniprot
Match: A0A6H5JX00_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX00_9PHAE) HSP 1 Score: 209 bits (531), Expect = 6.170e-58 Identity = 129/282 (45.74%), Postives = 163/282 (57.80%), Query Frame = 3
Query: 3 SLCRALVLLLTRPPRRSTSTTYVPASAGSLLEIIFDSDACPLASLPRPLARAAVDTLRREGFLRLTRMEALLESPILRSSRISRTGETKSTSAMENS---PSKDDVTE-------GFDFRAADSAFRRSWSMVASGVDQYIPYSLEMNVEEDGESAG-TCPPDEGYDSNGEVYDWDNFDSSPCVGDRWTRVPDEVTLRVFSFMTPKRLSRLSCVNRAWRELLGVVSIWRPFFEARWPLKSLKSEADLTGVSKMLVEAADRTRGGERKYKRRRRY----VVHW 803
SL AL LLLTRP R ++ VP +AG+LLEI+FDSDA PL+ +PRPLA AA+D L+ G ++L R + LL P R SR GE + S P VTE G DFR A AFR +WS+ A+GVD +P + G+ G + D D + G+ W RVPDEVT+RV SFMTPKR+ RL+CV+RAWRELL V +WRPFFEARWPL ++ S+ DL GVS L+ A+ +K KRRRR+ VVHW
Sbjct: 281 SLSHALALLLTRPKRGGLCSSTVPETAGNLLEIVFDSDARPLSCVPRPLAEAAIDVLKEAGHIQLARSDELLRPP-----RGSRRGEPNAAGRRTKSKLGPVAATVTEEGASFASGIDFRRASLAFRSTWSLAAAGVDTQLPSTSRSGRSRRGDGGGDSSXXXXXXXXXXXXADGDVDGAGAIAGNGWGRVPDEVTMRVLSFMTPKRVCRLACVDRAWRELLMVSGVWRPFFEARWPLSAIGSDLDLAGVSDRLL--AEGLGSARKKAKRRRRHGKIGVVHW 555
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 3 |
Model size | 1308 |
Cds size | 873 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928814.758844-UTR-F-serratus_M_contig1014:122010..122242 | 1622928814.758844-UTR-F-serratus_M_contig1014:122010..122242 | Fucus serratus male | UTR | F-serratus_M_contig1014 122011..122242 - |
1690962584.5039895-UTR-F-serratus_M_contig1014:122010..122242 | 1690962584.5039895-UTR-F-serratus_M_contig1014:122010..122242 | Fucus serratus male | UTR | F-serratus_M_contig1014 122011..122242 - |
1622928814.8163662-UTR-F-serratus_M_contig1014:123690..123893 | 1622928814.8163662-UTR-F-serratus_M_contig1014:123690..123893 | Fucus serratus male | UTR | F-serratus_M_contig1014 123691..123893 - |
1690962584.548546-UTR-F-serratus_M_contig1014:123690..123893 | 1690962584.548546-UTR-F-serratus_M_contig1014:123690..123893 | Fucus serratus male | UTR | F-serratus_M_contig1014 123691..123893 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928814.77376-CDS-F-serratus_M_contig1014:122242..122332 | 1622928814.77376-CDS-F-serratus_M_contig1014:122242..122332 | Fucus serratus male | CDS | F-serratus_M_contig1014 122243..122332 - |
1690962584.5209954-CDS-F-serratus_M_contig1014:122242..122332 | 1690962584.5209954-CDS-F-serratus_M_contig1014:122242..122332 | Fucus serratus male | CDS | F-serratus_M_contig1014 122243..122332 - |
1622928814.7874022-CDS-F-serratus_M_contig1014:122657..122825 | 1622928814.7874022-CDS-F-serratus_M_contig1014:122657..122825 | Fucus serratus male | CDS | F-serratus_M_contig1014 122658..122825 - |
1690962584.5319762-CDS-F-serratus_M_contig1014:122657..122825 | 1690962584.5319762-CDS-F-serratus_M_contig1014:122657..122825 | Fucus serratus male | CDS | F-serratus_M_contig1014 122658..122825 - |
1622928814.8049183-CDS-F-serratus_M_contig1014:123075..123690 | 1622928814.8049183-CDS-F-serratus_M_contig1014:123075..123690 | Fucus serratus male | CDS | F-serratus_M_contig1014 123076..123690 - |
1690962584.5405319-CDS-F-serratus_M_contig1014:123075..123690 | 1690962584.5405319-CDS-F-serratus_M_contig1014:123075..123690 | Fucus serratus male | CDS | F-serratus_M_contig1014 123076..123690 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1014.232.1 >prot_F-serratus_M_contig1014.232.1 ID=prot_F-serratus_M_contig1014.232.1|Name=mRNA_F-serratus_M_contig1014.232.1|organism=Fucus serratus male|type=polypeptide|length=291bp
MEALLESPILRSSRISRTGETKSTSAMENSPSKDDVTEGFDFRAADSAFR RSWSMVASGVDQYIPYSLEMNVEEDGESAGTCPPDEGYDSNGEVYDWDNF DSSPCVGDRWTRVPDEVTLRVFSFMTPKRLSRLSCVNRAWRELLGVVSIW RPFFEARWPLKSLKSEADLTGVSKMLVEAADRTRGGERKYKRRRRYVVHW DVSAEGDGHVEPTRDWMALYRGRHQAELATRGRCASKTSFPWMVCPFLGC VSYLKSEFAVKRHIQTHKPQRKARRRVRVRRLSAKCAKEA* back to topmRNA from alignment at F-serratus_M_contig1014:122011..123893- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig1014.232.1 ID=mRNA_F-serratus_M_contig1014.232.1|Name=mRNA_F-serratus_M_contig1014.232.1|organism=Fucus serratus male|type=mRNA|length=1883bp|location=Sequence derived from alignment at F-serratus_M_contig1014:122011..123893- (Fucus serratus male) GGTCGCTGTGCCGCGCGCTTGTCCTGCTGCTGACTCGCCCCCCACGGAGG
AGCACAAGTACAACTTATGTTCCTGCCAGTGCTGGGAGCCTGCTGGAGAT
CATATTCGACAGCGATGCGTGCCCTTTGGCAAGTTTGCCAAGGCCACTAG
CGAGGGCAGCGGTCGATACGCTTCGAAGGGAAGGTTTTCTGCGGCTCACC
CGCATGGAAGCCCTGCTGGAGTCACCCATTTTACGATCGTCGAGAATATC
GCGGACGGGAGAGACAAAATCAACCAGCGCAATGGAAAACTCGCCGTCGA
AGGACGATGTTACCGAAGGCTTCGATTTCCGCGCGGCGGATTCCGCCTTC
CGGCGGAGTTGGTCGATGGTAGCGTCTGGGGTGGATCAATACATCCCCTA
CTCGTTGGAGATGAACGTAGAAGAGGACGGCGAAAGCGCGGGTACATGCC
CTCCCGACGAGGGTTACGATTCGAATGGCGAGGTATACGATTGGGACAAC
TTTGATTCATCCCCCTGCGTAGGCGACCGCTGGACACGGGTGCCAGATGA
AGTCACCCTTCGCGTGTTCTCCTTCATGACACCGAAGCGGTTGTCCCGCC
TATCTTGCGTGAATCGCGCTTGGCGGGAGCTGCTCGGGGTCGTTTCTATA
TGGAGACCCTTTTTTGAAGCTCGCTGGCCGCTCAAGAGTCTCAAGAGCGA
GGCGGACCTTACAGGGGTGTCGAAAATGCTCGTCGAGGCGGCAGATCGTA
CGAGAGGCGGAGAGCGCAAGTACAAAAGAAGGAGACGCTACGTGGTACAT
TGGGACGTTTCGGCGGAGGTGTGTGGCTATTCTTGCTTTGGCGGTGACGA
TAACAATAGTCCTTTTTCAAGGAAGCGTTGCAAAAATCTCCGCGCCTGCG
TTCTGCTGGCATTAGGTCAGATCGTGTAATGACGCGTCTTAGAGGGAACT
CAAATGATTAAATACACTACCCGAACCTAAGTGCGATGTTCACGAAAAGG
AAGGTTATAGAGCTTTTTTGTTCACTAAGAAACAAGCAAAAACGACGGTA
AAACGATGGACTTGGCAGGGGGACGGCCACGTGGAGCCAACACGAGACTG
GATGGCACTCTACCGAGGTCGACATCAAGCAGAACTGGCAACTAGGGGGA
GGTGCGCCTCCAAGACGAGCTTTCCATGGATGGTGTGCCCTTTTTTGGGA
TGTGTGTCATATCTCAAGTCCGAATTTGCGGTTAAGGTGAGAGGGGATGC
GATGCGTTCATCCCTTGAGGAATCTCGAGATCATCGAGGGTCTGCGGCAT
AAGGAATCTTTCGATAACTTTGCGCTATTAGCTCTAGTAATAGGAAACTT
TTATTTTGATGTTGTACTTCCGAGTTGAGCACTTAATGCAGCAATAAAAG
CCGTTCATTGACTTGGAGAGGGGTTCCGTCTTTGTAGCGCCGCCATATAA
CGCGCCTGCGAGGGAGGTTGTATGATCTTGTTCGAAGCTTCAACGCGTAT
ATTTCCGTTGGCTGATATCCTCTGTTTTGTCCCGTCGACTCCCGTTAATG
GACGCCTACAGAGACACATCCAAACCCATAAGCCACAGCGGAAGGCGCGA
CGGCGTGTCCGTGTAAGGAGGTTGTCGGCGAAGTGTGCGAAAGAAGCGTG
AGAAGATCGCCTTGATGGTGCTGAATGGTTTTTGAGCCTTTATTAATGTA
GGACAGCATGGACGGAAGTATGGCTATCCATAGATAAGTGTATTCTTGCA
GCGTCAGACTAGGCGAACCTGGGGTTTGTGCTGTCGTTTAGAGCCTCGTG
AAATCATGTTGACCAAGCAAAAATTTACCATGGAGTTATGGTGCCAACCA
CCAATATTCTCTCATCCCGTGCGGGAGACGGAC back to topCoding sequence (CDS) from alignment at F-serratus_M_contig1014:122011..123893- >mRNA_F-serratus_M_contig1014.232.1 ID=mRNA_F-serratus_M_contig1014.232.1|Name=mRNA_F-serratus_M_contig1014.232.1|organism=Fucus serratus male|type=CDS|length=1746bp|location=Sequence derived from alignment at F-serratus_M_contig1014:122011..123893- (Fucus serratus male) ATGGAAGCCCTGCTGGAGTCACCCATTTTACGATCGTCGAGAATATCGCG GACGGGAGAGACAAAATCAACCAGCGCAATGGAAAACTCGCCGTCGAAGG ACGATGTTACCGAAGGCTTCGATTTCCGCGCGGCGGATTCCGCCTTCCGG CGGAGTTGGTCGATGGTAGCGTCTGGGGTGGATCAATACATCCCCTACTC GTTGGAGATGAACGTAGAAGAGGACGGCGAAAGCGCGGGTACATGCCCTC CCGACGAGGGTTACGATTCGAATGGCGAGGTATACGATTGGGACAACTTT GATTCATCCCCCTGCGTAGGCGACCGCTGGACACGGGTGCCAGATGAAGT CACCCTTCGCGTGTTCTCCTTCATGACACCGAAGCGGTTGTCCCGCCTAT CTTGCGTGAATCGCGCTTGGCGGGAGCTGCTCGGGGTCGTTTCTATATGG AGACCCTTTTTTGAAGCTCGCTGGCCGCTCAAGAGTCTCAAGAGCGAGGC GGACCTTACAGGGGTGTCGAAAATGCTCGTCGAGGCGGCAGATCGTACGA GAGGCGGAGAGCGCAAGTACAAAAGAAGGAGACGCTACGTGGTACATTGG GACGTTTCGGCGGAGATGGAAGCCCTGCTGGAGTCACCCATTTTACGATC GTCGAGAATATCGCGGACGGGAGAGACAAAATCAACCAGCGCAATGGAAA ACTCGCCGTCGAAGGACGATGTTACCGAAGGCTTCGATTTCCGCGCGGCG GATTCCGCCTTCCGGCGGAGTTGGTCGATGGTAGCGTCTGGGGTGGATCA ATACATCCCCTACTCGTTGGAGATGAACGTAGAAGAGGACGGCGAAAGCG CGGGTACATGCCCTCCCGACGAGGGTTACGATTCGAATGGCGAGGTATAC GATTGGGACAACTTTGATTCATCCCCCTGCGTAGGCGACCGCTGGACACG GGTGCCAGATGAAGTCACCCTTCGCGTGTTCTCCTTCATGACACCGAAGC GGTTGTCCCGCCTATCTTGCGTGAATCGCGCTTGGCGGGAGCTGCTCGGG GTCGTTTCTATATGGAGACCCTTTTTTGAAGCTCGCTGGCCGCTCAAGAG TCTCAAGAGCGAGGCGGACCTTACAGGGGTGTCGAAAATGCTCGTCGAGG CGGCAGATCGTACGAGAGGCGGAGAGCGCAAGTACAAAAGAAGGAGACGC TACGTGGTACATTGGGACGTTTCGGCGGAGGGGGACGGCCACGTGGAGCC AACACGAGACTGGATGGCACTCTACCGAGGTCGACATCAAGCAGAACTGG CAACTAGGGGGAGGTGCGCCTCCAAGACGAGCTTTCCATGGATGGTGTGC CCTTTTTTGGGATGTGTGTCATATCTCAAGTCCGAATTTGCGGTTAAGGG GGACGGCCACGTGGAGCCAACACGAGACTGGATGGCACTCTACCGAGGTC GACATCAAGCAGAACTGGCAACTAGGGGGAGGTGCGCCTCCAAGACGAGC TTTCCATGGATGGTGTGCCCTTTTTTGGGATGTGTGTCATATCTCAAGTC CGAATTTGCGGTTAAGAGACACATCCAAACCCATAAGCCACAGCGGAAGG CGCGACGGCGTGTCCGTGTAAGGAGGTTGTCGGCGAAGTGTGCGAAAGAA GCGTGAAGACACATCCAAACCCATAAGCCACAGCGGAAGGCGCGACGGCG TGTCCGTGTAAGGAGGTTGTCGGCGAAGTGTGCGAAAGAAGCGTGA back to top
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