mRNA_F-serratus_M_contig1013.224.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1013.224.1 vs. uniprot
Match: D7FK62_ECTSI (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK62_ECTSI) HSP 1 Score: 373 bits (957), Expect = 8.680e-126 Identity = 206/344 (59.88%), Postives = 236/344 (68.60%), Query Frame = 1 Query: 73 MNLGMRG-PLS-------VRSQLLHLASLSGRATATVRTSLRSRLKSPAVSCPLQSPPCSCTFVTRSSERVTAATAG------ADYTVSGSPEKRILYGGHQPISPWQRVAIAGWSAVSALRDPGRGDMVAALGEVTGKLALERLYRIMLADPEGAEIVGSKPVINEGTVDLSALAALPEGTFGKSYSNFMEGNKFSPDSRSPVKFVDDDDLAYVMRRYREVHDFWHVLSGLPPTVEGELALKWFELVQTGLPMCALGAVFGPLALPQREPPP--------------------REVLARTYVPWALRAGRSTRKPLMCVWYERRWEEPLEQVRKDLGFKVAPQR 1002 MNL MRG PLS R+ L S +TA T + S A S P SP S R + T G A+ T SG KR+LY GHQP SP QR A+AGW+ V+AL DP R DMVA LGEVTG+LALE+LYR MLADPEG EI+ ++PVINE TVDL+ALAALP+GT GKSYSNFM+ N FSPD RSPVK+VDD DLAYVMRRYREVHD WH L+GLP TVEGELALKWFELVQTGLP+CAL AV GPLALP +EPP REVLART+VPWA+RAGR R+PL+CVWYE+RWE+PLE VR+DLG ++APQR Sbjct: 1 MNLAMRGSPLSSGAIRRLARAPTPSLQSAPRFSTACGFTPTSASRLSAAAS-PRPSP------FQHGSRRPASTTIGSGDSTTANTTASGPAAKRVLYSGHQPTSPLQRTAMAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDLAALAALPDGTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRRYREVHDLWHALTGLPATVEGELALKWFELVQTGLPVCALSAVLGPLALPSKEPPAPTTTPSXXXSSGSGRKRRGSREVLARTFVPWAIRAGRRARRPLVCVWYEKRWEQPLELVRRDLGVEMAPQR 337
BLAST of mRNA_F-serratus_M_contig1013.224.1 vs. uniprot
Match: A0A835Z0M6_9STRA (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0M6_9STRA) HSP 1 Score: 276 bits (705), Expect = 4.630e-89 Identity = 137/245 (55.92%), Postives = 175/245 (71.43%), Query Frame = 1 Query: 265 AATAGADYTVSGSPEKRILYGGHQPISPWQRVAIAGWSAVSALRDPGRGDMVAALGEVTGKLALERLYRIMLADPEGAEIVGSKPVINEGTVDLSALAALPEGTFGKSYSNFMEGNKFSPDSRSPVKFVDDDDLAYVMRRYREVHDFWHVLSGLPPTVEGELALKWFELVQTGLPMCALGAVFGPLALPQREPPPREVLARTYVPWALRAGRSTRKPLMCVWYERRWEEPLEQVRKDLGFKVAPQ 999 A + + + +G P KRILY GH PISP QRV + SA SA DP R DMVAALGE TG AL++++ ML DP+G E++ +P ++E +VDL AL LP GTFGK+Y++FM N+F+PDSR PV+FVDD DLAYVM RYR+VHD WHVLSGLPP++EGE+ALKWFE+VQTGLP+ A+ A+ G +P+ R L + VPWA+RAGR + PLM VWYER W+ L R+ L F+ APQ Sbjct: 5 AGSTSSSKSAAGEPCKRILYKGHNPISPSQRVGLTFISAFSAFADPERADMVAALGETTGHRALKQMHHRMLQDPDGIELLRERPQLDEHSVDLEALGQLPSGTFGKAYADFMAHNQFTPDSRLPVRFVDDADLAYVMARYRQVHDLWHVLSGLPPSLEGEIALKWFEMVQTGLPVAAISALVGAARVPREG---RAALRQKLVPWAIRAGRRS-VPLMNVWYERYWDMYLSNFREKLKFEPAPQ 245
BLAST of mRNA_F-serratus_M_contig1013.224.1 vs. uniprot
Match: W7U2W9_9STRA (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2W9_9STRA) HSP 1 Score: 264 bits (675), Expect = 1.320e-83 Identity = 138/260 (53.08%), Postives = 177/260 (68.08%), Query Frame = 1 Query: 220 PCSCTFVT-RSSERVTAATAGADYTVSGSPEKRILYGGHQPISPWQRVAIAGWSAVSALRDPGRGDMVAALGEVTGKLALERLYRIMLADPEGAEIVGSKPVINEGTVDLSALAALPEGTFGKSYSNFMEGNKFSPDSRSPVKFVDDDDLAYVMRRYREVHDFWHVLSGLPPTVEGELALKWFELVQTGLPMCALGAVFGPLALPQREPPPREVLARTYVPWALRAGRSTRKPLMCVWYERRWEEPLEQVRKDLGFKVAP 996 PC+ TF R ++ ++G T + + LY H P S +Q++ IAG+SA +A RDP RGDMVAALGE TG AL+RL R M ADP G E++ +KP I E + L LPEGTFG+ Y+ F++ + +SPD R+ V+FVDD +LA+VM+RYR+VHDFWHVL GLPPTV GELALKWFE+VQT LP+ A V GPL+L +E R++L Y+PWA+RA R PLMCVWYER +EEPLE +RK L AP Sbjct: 50 PCARTFKRMRPFSTTSSQSSGGKETSPPAVPETPLYSSHIPTSGFQKLYIAGFSAATAFRDPERGDMVAALGETTGTRALQRLRRAMSADPVGRELLAAKPDIKEDSTRPDRLRRLPEGTFGREYARFLDHHGYSPDERAAVRFVDDAELAFVMQRYRQVHDFWHVLCGLPPTVLGELALKWFEMVQTRLPIAAFSGVVGPLSLSAQE---RKLLKEQYIPWAVRAAVKAR-PLMCVWYERSFEEPLELMRKRLQIVTAP 305
BLAST of mRNA_F-serratus_M_contig1013.224.1 vs. uniprot
Match: A0A6T5QVX1_HETAK (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5QVX1_HETAK) HSP 1 Score: 257 bits (656), Expect = 2.380e-81 Identity = 130/226 (57.52%), Postives = 158/226 (69.91%), Query Frame = 1 Query: 319 LYGGHQPISPWQRVAIAGWSAVSALRDPGRGDMVAALGEVTGKLALERLYRIMLADPEGAEIVGSKPVINEGTVDLSALAALPEGTFGKSYSNFMEGNKFSPDSRSPVKFVDDDDLAYVMRRYREVHDFWHVLSGLPPTVEGELALKWFELVQTGLPMCALGAVFGPLALPQREPPPREVLARTYVPWALRAGRSTRKPLMCVWYERRWEEPLEQVRKDLGFKVAP 996 LY HQP S +Q+ +A +SA+ AL DP R DMVA L E TG++AL L +M ADP G +I+ KP+++E TV+L L +LP GTFG +Y FM+GN FSP+ R+PV+FVDD +LAYV+ RYR+VHD WH L GLPPTV GELALKW EL+QTGLP+ AL A GPLAL P R +L R Y+PWALRA + R PLMCV YE W EPL VR LG AP Sbjct: 32 LYPTHQPTSTFQKGFLAVYSALVALNDPERADMVAVLSETTGEIALRNLRDVMKADPVGQQILLEKPILDETTVNLENLGSLPRGTFGHAYYTFMDGNGFSPEGRAPVRFVDDAELAYVLLRYRQVHDLWHALFGLPPTVGGELALKWLELLQTGLPVAALSAAAGPLAL---APADRALLRRVYLPWALRAHGALRAPLMCVRYEALWGEPLAAVRARLGVLPAP 254
BLAST of mRNA_F-serratus_M_contig1013.224.1 vs. uniprot
Match: K3XAS5_GLOUD (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XAS5_GLOUD) HSP 1 Score: 247 bits (630), Expect = 3.450e-77 Identity = 126/245 (51.43%), Postives = 170/245 (69.39%), Query Frame = 1 Query: 265 AATAGADY-TVSGSPEKRILYGGHQPISPWQRVAIAGWSAVSALRDPGRGDMVAALGEVTGKLALERLYRIMLADPEGAEIVGSKPVINEGTVDLSALAALPEGTFGKSYSNFMEGNKFSPDSRSPVKFVDDDDLAYVMRRYREVHDFWHVLSGLPPTVEGELALKWFELVQTGLPMCALGAVFGPLALPQREPPPREVLARTYVPWALRAGRSTRKPLMCVWYERRWEEPLEQVRKDLGFKVAP 996 AATA + + +G P+KR+LY H P SP Q+V ++ +SA+S DP RGDM+A LGEVTG+ AL +++ M +DP G I+ +P I +D++ L ALP+ TFG +YS FM+ + F D R+ VK+VDD++LAYVM+R+RE+HDFWHVL GLPPTV GE+ALK+ EL+QT LP+CAL GPL L E R VL R Y+PWA RAGR+ L+ V YE +E PLE++R+ L +VAP Sbjct: 34 AATASSPLGSAAGEPQKRVLYDTHMPTSPVQKVFLSVFSALSVFTDPERGDMLALLGEVTGRDALRQVHAKMCSDPVGVRILTERPSIRSDQIDMTYLRALPKHTFGYAYSQFMDSHGFEADGRAYVKYVDDEELAYVMKRHRELHDFWHVLFGLPPTVFGEIALKYVELLQTKLPVCALSGFVGPLRLTSEE---RRVLVRDYIPWANRAGRNAHF-LLSVMYEEEFETPLEELRQRLRIEVAP 274
BLAST of mRNA_F-serratus_M_contig1013.224.1 vs. uniprot
Match: A0A151MFC8_ALLMI (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=4 Tax=Crocodylia TaxID=1294634 RepID=A0A151MFC8_ALLMI) HSP 1 Score: 240 bits (613), Expect = 3.610e-75 Identity = 117/226 (51.77%), Postives = 158/226 (69.91%), Query Frame = 1 Query: 319 LYGGHQPISPWQRVAIAGWSAVSALRDPGRGDMVAALGEVTGKLALERLYRIMLADPEGAEIVGSKPVINEGTVDLSALAALPEGTFGKSYSNFMEGNKFSPDSRSPVKFVDDDDLAYVMRRYREVHDFWHVLSGLPPTVEGELALKWFELVQTGLPMCALGAVFGPLALPQREPPPREVLARTYVPWALRAGRSTRKPLMCVWYERRWEEPLEQVRKDLGFKVAP 996 LY GH P SP Q+V +A SA++ALRDP R DMVA LGE TG LAL+RL M D EG +I+ +P I T+D++ L LP+GTFG+ Y F+E N+ SPD+R P KFVDD++LAYV++RYREVHD H L G+P + GE+ +KWFE VQTGLPMCALGAVFGP+ L R+ +VL +PWA+++G ++ ++YERRWE+ +E +R+++G P Sbjct: 9 LYPGHVPTSPLQKVLLAAGSALAALRDPYRHDMVAVLGETTGSLALQRLRDKMRHDAEGYQILRERPRIRLSTLDVAGLRGLPDGTFGREYMRFLEDNRVSPDTRMPAKFVDDEELAYVIQRYREVHDLMHTLLGMPTNMLGEVVVKWFEAVQTGLPMCALGAVFGPIRLKARK---LQVLTTELIPWAVQSGLRA-NCILNIYYERRWEQTVESLREEIGILPPP 230
BLAST of mRNA_F-serratus_M_contig1013.224.1 vs. uniprot
Match: A0A197JDW1_9FUNG (Ubiquinone biosynthesis protein COQ4, mitochondrial n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JDW1_9FUNG) HSP 1 Score: 240 bits (612), Expect = 1.340e-74 Identity = 124/227 (54.63%), Postives = 154/227 (67.84%), Query Frame = 1 Query: 319 LYGGHQPISPWQRVAIAGWSAVSALRDPGRGDMVAALGEVTGKLALERLYRIMLADPEGAEIVGSKPVINEGTVDLSALAALPEGTFGKSYSNFMEGNKFSPDSRSPVKFVDDDDLAYVMRRYREVHDFWHVLSGLPPTVEGELALKWFELVQTGLPMCALGAVFGPLALPQREPPPREVLARTYVPWALRAGRSTRKPLMCVWYERRWEEPLEQVRKDLGFKVAPQ 999 LY GH PISP QR +A SA +AL +P RGDMVAALGE T + L R+ ML DPEG I+ +PVI T+ L L LP+GTFG+ Y F++ + SPD+R PV FVD ++LAYVM+RYRE HDF+H L+GLP TV+GE+ALKWFE+ QTGLPM L + FGPL L E RE L YVPWAL G ST K LM V +E E+P+E V+++LG + PQ Sbjct: 51 LYDGHIPISPLQRTILAVGSAFTALANPLRGDMVAALGETTSGIFLNRIRDQMLQDPEGRRILRERPVITSETMQLDTLRQLPDGTFGREYVRFLDDQQVSPDTREPVHFVDSEELAYVMQRYRETHDFYHTLTGLPVTVDGEIALKWFEMAQTGLPMTMLSSFFGPLRLSSEE---RERLFNVYVPWALENG-STSKLLMNVRWEEWMEKPVEDVQRELGVRPCPQ 273
BLAST of mRNA_F-serratus_M_contig1013.224.1 vs. uniprot
Match: UPI0020261F22 (ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Sphaerodactylus townsendi TaxID=933632 RepID=UPI0020261F22) HSP 1 Score: 237 bits (605), Expect = 1.780e-73 Identity = 123/257 (47.86%), Postives = 161/257 (62.65%), Query Frame = 1 Query: 226 SCTFVTRSSERVTAATAGADYTVSGSPEKRILYGGHQPISPWQRVAIAGWSAVSALRDPGRGDMVAALGEVTGKLALERLYRIMLADPEGAEIVGSKPVINEGTVDLSALAALPEGTFGKSYSNFMEGNKFSPDSRSPVKFVDDDDLAYVMRRYREVHDFWHVLSGLPPTVEGELALKWFELVQTGLPMCALGAVFGPLALPQREPPPREVLARTYVPWALRAGRSTRKPLMCVWYERRWEEPLEQVRKDLGFKVAP 996 SC R +R A A T G LY GH P SP Q+ + SA AL DP R DMVA LGE TG LAL++L M DPEG +I+ +P I T+D++ L ALPEGTFG+ Y F++ N+ SPD+R P KFVDD++LAYV++RYREVHD H L G+P + GE+A+KWFE VQTGLPMC LGA+FGP L R+ VL +PWA+R+G S ++ +YE+RWE+ +E +R ++G P Sbjct: 23 SCWVAGRRCQRCHTGQASATETPVGEEASYPLYPGHIPTSPLQKALLTVGSAFMALYDPYRHDMVAVLGETTGSLALQKLRERMRNDPEGHQILQERPRIRLSTLDITGLRALPEGTFGREYVRFLDDNRVSPDTRMPTKFVDDEELAYVVQRYREVHDLMHTLLGMPTNMLGEVAVKWFEAVQTGLPMCILGAMFGPARLNTRK---LYVLTTDLIPWAVRSG-SNASCILNFYYEKRWEQTVESLRNEIGILPPP 275
BLAST of mRNA_F-serratus_M_contig1013.224.1 vs. uniprot
Match: D0NLX9_PHYIT (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NLX9_PHYIT) HSP 1 Score: 236 bits (601), Expect = 2.930e-73 Identity = 117/235 (49.79%), Postives = 159/235 (67.66%), Query Frame = 1 Query: 292 VSGSPEKRILYGGHQPISPWQRVAIAGWSAVSALRDPGRGDMVAALGEVTGKLALERLYRIMLADPEGAEIVGSKPVINEGTVDLSALAALPEGTFGKSYSNFMEGNKFSPDSRSPVKFVDDDDLAYVMRRYREVHDFWHVLSGLPPTVEGELALKWFELVQTGLPMCALGAVFGPLALPQREPPPREVLARTYVPWALRAGRSTRKPLMCVWYERRWEEPLEQVRKDLGFKVAP 996 V+G P++RI Y H P SP Q++ ++ SA++ +P RGDM+AALGEVTG+ AL R++ M ADP GA I+ KPVI +D+ L ALPE +FG+ Y+ FM+ + F D RSPV+FVDD +LAYVM+R+RE+HDFWH L +PPT GE+ALK+ E+ + LP+ AL A GPL L E R +L + YVPWA RA R+ L CV YE +E P+E++R+ L +VAP Sbjct: 4 VAGLPQRRIQYDSHMPTSPLQKLVLSVTSALTVFANPERGDMLAALGEVTGRDALRRIHARMCADPVGARILAEKPVIRNDKIDMDYLRALPEDSFGRRYATFMDSHGFDADGRSPVRFVDDPELAYVMQRHRELHDFWHTLFDVPPTELGEIALKYVEMAHSKLPVSALSAFVGPLRLSSEE---RCLLVKVYVPWANRASRNAHS-LHCVMYEEEFETPIEKLRQRLNVEVAP 234
BLAST of mRNA_F-serratus_M_contig1013.224.1 vs. uniprot
Match: A0A7K5FGZ4_PROAR (COQ4 protein (Fragment) n=1 Tax=Probosciger aterrimus TaxID=141839 RepID=A0A7K5FGZ4_PROAR) HSP 1 Score: 235 bits (600), Expect = 3.760e-73 Identity = 118/226 (52.21%), Postives = 153/226 (67.70%), Query Frame = 1 Query: 319 LYGGHQPISPWQRVAIAGWSAVSALRDPGRGDMVAALGEVTGKLALERLYRIMLADPEGAEIVGSKPVINEGTVDLSALAALPEGTFGKSYSNFMEGNKFSPDSRSPVKFVDDDDLAYVMRRYREVHDFWHVLSGLPPTVEGELALKWFELVQTGLPMCALGAVFGPLALPQREPPPREVLARTYVPWALRAGRSTRKPLMCVWYERRWEEPLEQVRKDLGFKVAP 996 LY GH P SP Q+ +AG SAV AL DP R DMVA LGE TG LAL L M PEG I+ +P I T+D+S L LP+G+ G+ Y F+E NK SPD+R P KFVDD++LAYV++RYREVHD H L G+P + GE+ +KWFE +QTGLPMC LGA FGP+ L R+ +VLA VPWA+R+GR+ + V+YE+RWE+P+E +R+++G P Sbjct: 27 LYPGHIPTSPLQKALLAGGSAVMALYDPYRHDMVAVLGETTGCLALPNLRDKMKHHPEGYRILRERPRIRLSTLDMSRLQGLPDGSLGREYVRFLEDNKVSPDTRMPPKFVDDEELAYVIQRYREVHDVMHTLLGMPTNMLGEVVVKWFEAIQTGLPMCVLGAAFGPIRLSARK---LQVLATELVPWAIRSGRNA-SCFLNVYYEQRWEQPVESLREEIGIFPPP 248 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1013.224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1013.224.1 >prot_F-serratus_M_contig1013.224.1 ID=prot_F-serratus_M_contig1013.224.1|Name=mRNA_F-serratus_M_contig1013.224.1|organism=Fucus serratus male|type=polypeptide|length=335bp WDQRQKRRSALALSGNQLYHPSFEMNLGMRGPLSVRSQLLHLASLSGRATback to top mRNA from alignment at F-serratus_M_contig1013:250390..253394- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1013.224.1 ID=mRNA_F-serratus_M_contig1013.224.1|Name=mRNA_F-serratus_M_contig1013.224.1|organism=Fucus serratus male|type=mRNA|length=3005bp|location=Sequence derived from alignment at F-serratus_M_contig1013:250390..253394- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1013:250390..253394- >mRNA_F-serratus_M_contig1013.224.1 ID=mRNA_F-serratus_M_contig1013.224.1|Name=mRNA_F-serratus_M_contig1013.224.1|organism=Fucus serratus male|type=CDS|length=2010bp|location=Sequence derived from alignment at F-serratus_M_contig1013:250390..253394- (Fucus serratus male)back to top |