mRNA_F-serratus_M_contig1013.220.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1013.220.1 vs. uniprot
Match: A0A5Q4DZN8_9CYAN (RNB domain-containing ribonuclease n=1 Tax=Leptolyngbya sp. DLM2.Bin27 TaxID=2480213 RepID=A0A5Q4DZN8_9CYAN) HSP 1 Score: 242 bits (617), Expect = 1.270e-70 Identity = 142/346 (41.04%), Postives = 206/346 (59.54%), Query Frame = 3 Query: 6 FSDEAMEQVRAMVDTPPPDPEAETRRDLTHLKVYAVDSEDTLEVDDGLSVETLPNGGGEVIWVHIADVSRWVPEGSPLYRESRSRRTTSYLPEGSLPMFPAEVAHGVLSLGAGKECYALSMGITLGEDGEIADVTVTPSLVKVTYRLTYEDVEDMLANGIARTSEEWQLGRLDELAQLRYRYRCGRGSVDRFQKSLDNIIKATEDPSSNGGYDVKITP-EDPSSRSIRLVTEMMVLVGEGMGMVGARAGIALPYRNQKAPDVFPEEELNSMPVKYCRAQAAYKYMNSAVTATSPQQHWGLGLESYVQWSSPIRRFLDLLAHYQIKRWLSGRETLAGSRIMAEVEAG 1040 FS+E + + + PPPDP+ R DLTHLKVY VD T E+DDGLS+ETL NG + +W+HIAD +RW+ G L +R R TT YLP G +PMFP E+A G +SL G+ C ALS GITL G++ D ++ PSL++ TYRLTY+DV +ML G+ + E ++ L A++R ++R +G++ ++ IK TE G+D+ I D +R + V EMM+L GE G +A+P+R+Q P++ +EEL S+P + R A + M + +P +H LGL+SY Q +SPIRR+LDL+ H+Q+K L G S + E+ G Sbjct: 243 FSEETLAMAQQRLQAPPPDPDIH-RVDLTHLKVYTVDDASTQEIDDGLSLETLDNGD-QRLWIHIADPTRWLLPGDDLDLAARRRCTTVYLPTGMIPMFPLELATGAMSLIQGQTCCALSFGITLSAAGDVQDYSIHPSLIRPTYRLTYDDVNEMLELGV---TAEPEIQGLAHWAKVRSQWRLTQGAIS--INMPESSIKVTE-----AGHDIMIDVLNDSVARQV--VAEMMILAGEVAAHYGQTHALAIPFRSQPQPELPSDEELISLPTGWVRDSAIRRCMTRSEVGITPSRHATLGLDSYSQVTSPIRRYLDLVTHFQLKAHLRGEPLPFSSTEVTELAIG 574
BLAST of mRNA_F-serratus_M_contig1013.220.1 vs. uniprot
Match: A0A6I5NPR5_9CYAN (VacB/RNase II family 3'-5' exoribonuclease n=1 Tax=Leptolyngbya sp. SIO4C1 TaxID=2607770 RepID=A0A6I5NPR5_9CYAN) HSP 1 Score: 241 bits (616), Expect = 1.530e-70 Identity = 149/348 (42.82%), Postives = 199/348 (57.18%), Query Frame = 3 Query: 6 FSDEAMEQVRAMVDTPPPDPEAETRRDLTHLKVYAVDSEDTLEVDDGLSVETLPNGGGEVIWVHIADVSRWVPEGSPLYRESRSRRTTSYLPEGSLPMFPAEVAHGVLSLGAGKECYALSMGITLGEDGEIADVTVTPSLVKVTYRLTYEDVEDMLANGIARTSEEWQLGRLDELAQLRYRYRCGRGSVDRFQKSLDNIIKATEDPSSNGGYDVKITPEDPSSRSIRLVTEMMVLVGEGMGMVGARAGIALPYRNQKAPDVFPEEELNSMPVKYCRAQAAYKYMNSAVTATSPQQHWGLGLESYVQWSSPIRRFLDLLAHYQIKRWLSGRETLAGSRIMAEVEAGEGT 1049 FSDE + + + PPPDP+A R DLTHLKVY +D E T E+DDGLS+ETL + + IW+HIAD +R + G L E+R R TT YLP G +PMFP E+A G +SL G+EC ALS G+ L DGEIAD T+ PS +K TYRLTYEDV++ML + E +L L A+ R R+R G++ I E G D+ I D SS + LV EMM+L GE G +A+P+R Q P++ E+EL +P + R A + M + + +P +H LGL Y Q +SPIRR+ DLLAH+Q+K L G M+E+ G T Sbjct: 242 FSDEVISMAQHCLMNPPPDPDA-VRLDLTHLKVYTIDDESTREIDDGLSLETLEDDR-QRIWIHIADPTRLLSPGDALDLEARRRCTTVYLPTGIVPMFPEELATGPMSLVQGQECCALSFGVILQVDGEIADYTIRPSTIKPTYRLTYEDVDEMLELDL---QTEPELTALSAWAKQRQRWRTEHGAIK---------IDLPESTIKVEGDDIIIDVLDNSSSRL-LVAEMMILAGEVAARYGGENSLAMPFRGQPEPELPSEDELLRLPTGWVRDSAIRRCMPRSEVSVTPARHATLGLAGYSQVTSPIRRYADLLAHFQLKAHLRGEPLPFSVHEMSEIMQGVAT 574
BLAST of mRNA_F-serratus_M_contig1013.220.1 vs. uniprot
Match: A0A352X5K1_9CYAN (RNB domain-containing ribonuclease (Fragment) n=1 Tax=Cyanobacteria bacterium UBA11367 TaxID=2055774 RepID=A0A352X5K1_9CYAN) HSP 1 Score: 237 bits (604), Expect = 1.980e-70 Identity = 148/329 (44.98%), Postives = 194/329 (58.97%), Query Frame = 3 Query: 6 FSDEAMEQVRAMVDTPPPDPEAETRRDLTHLKVYAVDSEDTLEVDDGLSVETLPNGGGEVIWVHIADVSRWVPEGSPLYRESRSRRTTSYLPEGSLPMFPAEVAHGVLSLGAGKECYALSMGITLGEDGEIADVTVTPSLVKVTYRLTYEDVEDMLANGIARTSEEWQLGRLDELAQLRYRYRCGRGSVDRFQKSLDNIIKATEDPSSNGGYDVKITPEDPSSRSIRLVTEMMVLVGEGMGMVGARAGIALPYRNQKAPDVFPEEELNSMPVKYCRAQAAYKYMNSAVTATSPQQHWGLGLESYVQWSSPIRRFLDLLAHYQIKRWLSG 992 F E +E + ++ PPPDP+ E R DLTHLKVY +D E T E+DDGLS+ETL +G E +W+HIAD +R V G L E+R R TT YLP G +PMFP E+A G +SL GK C ALS G+ L E G I + ++ SL+K TYRLTY+DV++ML GI SE + + + AQ R R R +GS+ +IK N + + + SRS LV EMM+L GE G G I LP+R Q P++ P EEL +P R A M + + +P +H GLGLE+Y Q +SPIRR+ DLLAH+QIK L G Sbjct: 67 FRREVLELAQQRLNFPPPDPDEE-RLDLTHLKVYTIDDESTQEIDDGLSLETLSDGR-EKLWIHIADPTRLVMPGDELDLEARRRSTTLYLPTGMIPMFPPELATGPMSLVEGKICPALSFGVILDEIGSIQEYSIHASLIKPTYRLTYQDVDEMLELGIKGESE---IEAIAKWAQRRERLRQAQGSITIHMPEA--VIKVCN----NDEIAIDVLED---SRSRLLVAEMMILAGEVGGRYGQTHQIPLPFRGQPQPELPPYEELAQLPAGPVRFCAMRSRMPRSEMSITPVRHAGLGLETYTQVTSPIRRYSDLLAHFQIKAHLRG 381
BLAST of mRNA_F-serratus_M_contig1013.220.1 vs. uniprot
Match: A0A351KYL7_9CYAN (RNB domain-containing ribonuclease n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A351KYL7_9CYAN) HSP 1 Score: 241 bits (615), Expect = 2.150e-70 Identity = 141/345 (40.87%), Postives = 205/345 (59.42%), Query Frame = 3 Query: 6 FSDEAMEQVRAMVDTPPPDPEAETRRDLTHLKVYAVDSEDTLEVDDGLSVETLPNGGGEVIWVHIADVSRWVPEGSPLYRESRSRRTTSYLPEGSLPMFPAEVAHGVLSLGAGKECYALSMGITLGEDGEIADVTVTPSLVKVTYRLTYEDVEDMLANGIARTSEEWQLGRLDELAQLRYRYRCGRGSVDRFQKSLDNIIKATEDPSSNGGYDVKITPEDPSSRSIRLVTEMMVLVGEGMGMVGARAGIALPYRNQKAPDVFPEEELNSMPVKYCRAQAAYKYMNSAVTATSPQQHWGLGLESYVQWSSPIRRFLDLLAHYQIKRWLSGRETLAGSRIMAEVEAG 1040 FS + +E + PPDP++E R DLT LKVY +D E T E+DDGLS E+LP+G + +WVHIAD +RW+ G L ++R R TT YLP G +PMFPAE+A G +SL GK C ALS GI L ++G +++ ++ S++K TYRLTYEDV++ML G+ E ++ + LAQLR +R +G+++ + A E +++ + P+ + LV EMM+L GE +ALP+R+Q PD+ P+EEL +P RA A + M + + +P +H LGL+SY Q +SPIRR+ DLL H+QIK L G + + + EV G Sbjct: 242 FSTKVLEVAHQRTEVAPPDPDSE-RLDLTRLKVYTIDDESTKEIDDGLSWESLPDGK-QRLWVHIADPTRWLTPGDELDLDARRRSTTLYLPTGMIPMFPAELATGPMSLVQGKICNALSFGIILDDEGGVSEYSIHASIIKPTYRLTYEDVDEMLQLGVPA---ELEIDAIARLAQLRQLWRRSQGAINIHLPEACIKVDADE-------IHIEVLEDSPARQ---LVAEMMILAGEVAARYAQTHQLALPFRSQPQPDLPPDEELLQLPAGPVRACAIRRCMPRSEMSITPARHASLGLDSYTQVTSPIRRYSDLLTHFQIKAHLRGEQPPFSAEQVKEVMIG 571
BLAST of mRNA_F-serratus_M_contig1013.220.1 vs. uniprot
Match: A0A073CMD8_PLAAG (Rnb n=16 Tax=Oscillatoriales TaxID=1150 RepID=A0A073CMD8_PLAAG) HSP 1 Score: 240 bits (613), Expect = 3.970e-70 Identity = 143/330 (43.33%), Postives = 199/330 (60.30%), Query Frame = 3 Query: 6 FSDEAMEQVRAMVDTPPPDPEAETRRDLTHLKVYAVDSEDTLEVDDGLSVETLPNGGGEVIWVHIADVSRWVPEGSPLYRESRSRRTTSYLPEGSLPMFPAEVAHGVLSLGAGKECYALSMGITLGEDGEIADVTVTPSLVKVTYRLTYEDVEDMLANGIARTSEEWQLGRLDELAQLRYRYRCGRGSVDRFQKSLDNIIKATEDPSSNGGYDVKITP-EDPSSRSIRLVTEMMVLVGEGMGMVGARAGIALPYRNQKAPDVFPEEELNSMPVKYCRAQAAYKYMNSAVTATSPQQHWGLGLESYVQWSSPIRRFLDLLAHYQIKRWLSG 992 FS + +E R +D+PPPDP+++ R DLTHLKVY +D E T E+DDGLS+E L +G IW+HIAD +R + G L E+R R TT YLP G +PMFP+E+A G +SL G+ C ALS G+ L E G + D ++ S +K TYRLTY+DV++ML GI E ++ L A+ R +R G++ + +++IK G ++ IT ED SR ++V EMM+L GE G + LPYR+Q P++ PEEEL +P RA +YM + +P +H L LE+Y Q +SPIRR+ DLLAH+QIK L G Sbjct: 242 FSTQVLEVARRCLDSPPPDPDSD-RLDLTHLKVYTIDDESTREIDDGLSLEVLEDGRRR-IWIHIADPTRLLSPGDELDLEARRRTTTVYLPTGMVPMFPSELATGPMSLIQGQVCCALSFGVILDETGGVKDYSIHVSNIKPTYRLTYDDVDEMLQIGI---QGEPEIDALSLWAKRRKEWRNANGAISIYMP--ESVIKVN-------GEEISITVVEDSPSR--QMVAEMMILTGEVAARYGQTHNLPLPYRSQPQPELPPEEELMQLPPGAVRACTMRRYMPRSEVGLTPSRHASLALETYTQVTSPIRRYSDLLAHFQIKAHLRG 555 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1013.220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pages
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1013.220.1 >prot_F-serratus_M_contig1013.220.1 ID=prot_F-serratus_M_contig1013.220.1|Name=mRNA_F-serratus_M_contig1013.220.1|organism=Fucus serratus male|type=polypeptide|length=345bp MEQVRAMVDTPPPDPEAETRRDLTHLKVYAVDSEDTLEVDDGLSVETLPNback to top mRNA from alignment at F-serratus_M_contig1013:191651..202549+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1013.220.1 ID=mRNA_F-serratus_M_contig1013.220.1|Name=mRNA_F-serratus_M_contig1013.220.1|organism=Fucus serratus male|type=mRNA|length=10899bp|location=Sequence derived from alignment at F-serratus_M_contig1013:191651..202549+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1013:191651..202549+ >mRNA_F-serratus_M_contig1013.220.1 ID=mRNA_F-serratus_M_contig1013.220.1|Name=mRNA_F-serratus_M_contig1013.220.1|organism=Fucus serratus male|type=CDS|length=2070bp|location=Sequence derived from alignment at F-serratus_M_contig1013:191651..202549+ (Fucus serratus male)back to top |