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Homology
BLAST of mRNA_F-serratus_M_contig1013.218.1 vs. uniprot
Match: A0A6H5KWU3_9PHAE (RNB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU3_9PHAE) HSP 1 Score: 139 bits (350), Expect = 2.120e-36 Identity = 71/115 (61.74%), Postives = 89/115 (77.39%), Query Frame = 1
Query: 58 DPRSMAQLLFGVVEPSPKECYRAFRLLEG-EGALRFKRRRDGRYECRSREAVDLALRKIELDNAARAKKEKFAAGLQVGLREGAGRRKTPLSLDDLAEDERKMLEGLKTLAVQSV 399
DPR MA+LLFGV +PSP++CY AFRLLEG +G L FKRRRDG YECRSREAV++A R++ ++A +AKK F A LQ GL EG G RKTPL + D E++++ML GL+ LA QSV
Sbjct: 220 DPRGMAELLFGVGDPSPQQCYHAFRLLEGRDGTLYFKRRRDGTYECRSREAVEVARRQLSQEDAVKAKKADFVASLQAGLNEGGGYRKTPLVVGDFDEEQQEMLSGLEILAAQSV 334
BLAST of mRNA_F-serratus_M_contig1013.218.1 vs. uniprot
Match: D8LLK7_ECTSI (COG0557: Exoribonuclease R n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK7_ECTSI) HSP 1 Score: 140 bits (353), Expect = 4.630e-36 Identity = 71/115 (61.74%), Postives = 90/115 (78.26%), Query Frame = 1
Query: 58 DPRSMAQLLFGVVEPSPKECYRAFRLLEG-EGALRFKRRRDGRYECRSREAVDLALRKIELDNAARAKKEKFAAGLQVGLREGAGRRKTPLSLDDLAEDERKMLEGLKTLAVQSV 399
DPR MA+LLFGV +PSP++CY AFRLLEG +G L FKRRRDG YECRSREAV++A R++ ++A +AKK F A LQ GL EG G RKTPL ++D E++++ML GL+ LA QSV
Sbjct: 122 DPRGMAELLFGVGDPSPQQCYHAFRLLEGRDGTLYFKRRRDGTYECRSREAVEVARRQLSQEDAVKAKKADFVASLQAGLNEGGGYRKTPLVVEDFDEEQQEMLSGLEILAAQSV 236
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 140.2 |
Seed ortholog evalue | 7e-31 |
Seed eggNOG ortholog | 2880.D8LLK7 |
Hectar predicted targeting category | other localisation |
EggNOG free text desc. | 3'-5'-exoribonuclease activity |
EggNOG OGs | COG0557@1,KOG2102@2759 |
Ec32 ortholog description | Nucleic acid-binding, OB-fold |
Ec32 ortholog | Ec-04_005440.1 |
COG Functional cat. | K |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
Exons | 3 |
Model size | 403 |
Cds size | 399 |
Stop | 0 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928811.6403542-CDS-F-serratus_M_contig1013:125037..125237 | 1622928811.6403542-CDS-F-serratus_M_contig1013:125037..125237 | Fucus serratus male | CDS | F-serratus_M_contig1013 125038..125237 + |
1690962583.1077547-CDS-F-serratus_M_contig1013:125037..125237 | 1690962583.1077547-CDS-F-serratus_M_contig1013:125037..125237 | Fucus serratus male | CDS | F-serratus_M_contig1013 125038..125237 + |
1622928811.6540074-CDS-F-serratus_M_contig1013:126097..126275 | 1622928811.6540074-CDS-F-serratus_M_contig1013:126097..126275 | Fucus serratus male | CDS | F-serratus_M_contig1013 126098..126275 + |
1690962583.1204655-CDS-F-serratus_M_contig1013:126097..126275 | 1690962583.1204655-CDS-F-serratus_M_contig1013:126097..126275 | Fucus serratus male | CDS | F-serratus_M_contig1013 126098..126275 + |
1622928811.6748142-CDS-F-serratus_M_contig1013:127219..127240 | 1622928811.6748142-CDS-F-serratus_M_contig1013:127219..127240 | Fucus serratus male | CDS | F-serratus_M_contig1013 127220..127240 + |
1690962583.128015-CDS-F-serratus_M_contig1013:127219..127240 | 1690962583.128015-CDS-F-serratus_M_contig1013:127219..127240 | Fucus serratus male | CDS | F-serratus_M_contig1013 127220..127240 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1013.218.1 >prot_F-serratus_M_contig1013.218.1 ID=prot_F-serratus_M_contig1013.218.1|Name=mRNA_F-serratus_M_contig1013.218.1|organism=Fucus serratus male|type=polypeptide|length=133bp
GDADGGGGLGGGGEKASVSDPRSMAQLLFGVVEPSPKECYRAFRLLEGEG ALRFKRRRDGRYECRSREAVDLALRKIELDNAARAKKEKFAAGLQVGLRE GAGRRKTPLSLDDLAEDERKMLEGLKTLAVQSV back to topmRNA from alignment at F-serratus_M_contig1013:125038..127242+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig1013.218.1 ID=mRNA_F-serratus_M_contig1013.218.1|Name=mRNA_F-serratus_M_contig1013.218.1|organism=Fucus serratus male|type=mRNA|length=2205bp|location=Sequence derived from alignment at F-serratus_M_contig1013:125038..127242+ (Fucus serratus male) GGGGATGCTGATGGTGGCGGCGGTCTTGGTGGCGGCGGTGAGAAGGCCAG
CGTGAGCGACCCTCGAAGCATGGCACAGCTGCTATTTGGGGTGGTAGAGC
CAAGTCCCAAGGAGTGCTACAGGGCGTTTAGGCTGCTGGAGGGGGAGGGT
GCGCTGCGTTTCAAGCGCCGGCGAGATGGTCGCTATGAGTGTCGGTCGAG
GTGCGTGAGGCCCTCCGCCGTTGAGTTGATACACATGCAGATTTTGACGG
TGGTCTTAGTTAACAGTACGGTATCTCTCGGAGTATAAGTATGTACCAGG
TATGGTCTTTACTTAGAGCAGAGCATGAATCAACCGGGTAAGGTTGCCAA
TCCCGCTATTAATATTTAATAGTGGTCAGCTGAACAGAGAAAAATGATGT
TTCCCTGTCCCCGTTCGCGCCCGAGAATTTGATGTCGCGAGACGGGTTCG
GCCGTCTCGTCCCGCATCGGCCTGCTCATTTTCCACACTCAGTTGAACTA
CTGAGTCACGTGACTGAGTAGTTTAATAGTTTAGCCCTATTCTCTGTAGT
ACCAATGATTTCCATGGGGGTTGTGTGCTGTTGCTAAGATTCCCTACGCA
ATTATGTTTTGAAGATTGACGATATTTTCGGGTATGAAGGGCGTTCTCCT
GAGCGTGACTGGCGTAGTACTCCTTTTGCAACACGTACCTGTGTTAGGGC
ATAGTTATGTGTGATCAACCTTGCTGGGTATCGAATGGGAAGTCACGCCT
TGCGTAGTTATGAATCGAGAACTGTGTCAACGCGAGACGCAGCTGTAATA
ACAGTACAGTATTACCTAGCGGACGAAGAACTTTGAAGAAAGAACGGCAG
CTTCCTCTTTTGTCAGCCGTAGCACTCTATCCCCGCAAGCGCAACAGGCC
TTACGAAGGATTAGATATTTCCCGCTTCGCTCTTTTGGTTGGGAATTATC
GGCGAAAAGGCAGGCCTCCACACTAGTAGCGATCCCTGAAGTTTTCACAG
ACTGTTTGACGGCGTTCTGACGAAATCGCCGGGGGTGCGACGCGTCATTT
TCCTCGTTAGGGAGGCGGTGGATTTAGCGCTTCGAAAGATCGAGCTGGAC
AACGCGGCGAGGGCGAAGAAGGAGAAGTTCGCCGCTGGTCTTCAGGTGGG
CCTCCGCGAGGGAGCCGGGAGACGGAAGACGCCTCTTTCTTTGGATGATC
TCGCAGAGGACGAGCGGAAAATGCTAGAGGGGCTTAAGGTACGTCCGCGC
TCTCGTGGTGAATGCGATGACATGGAGCTGTGCGAAAGGGTTTCACAAAT
AAGTATTTAGCACTGAATTACGAGTAATTTTGTTGTTCTTGTGAATCACG
TTCAGCTCAAATCGATCCTTTGAACGACCCCCAAAGAGCCCCGCCTACCC
GGGCACGCTGAAGTGTTCCAGCATCGATGCCAAAAAGCTTTGGACGGAGG
TTGGGCGCAACAAAACGCTAAAGTATTCAAAACCCAAGTTGGCCTACCTA
GAGAGCACACCCAACTACAGTACCGCCCTGTTAATGCCAACACCTTGGCC
TCAAGAGTGGCTTCACTTTCGCTTCATTCTCACAAGCCATTCCCCCTGTA
CCTCTGGCCGGTGTACGCCTAGAATGTCCACCCCCCGCGTTCTGTCGCAG
CCTTCTCGCCGCAAAAAAACGTTGGCATTTTTCTTCTGTTTTTTCCACGT
ACGTGCGCACGACTCGAGAGAGGAGTTTTATCTCCCCTCCTATCAATAGT
ACGTACCAGGTACTCTTTTTCTTGGATCGAAACGGTTGGTTTTGACGACT
GAAGTTGATTACAGTACGAAGTAAACTTTATTTTCCATATTTCAGGAAGT
GGCGTTCTCCCCCCCCCCCCTCCCCATCCAAGTTTTCACTGTTAGAAAGT
GTAGCTTTTCGCCTGTCTTTTTTTGTGGAAATGGCTGAACTACCCTAAAC
ACACATACCTCCCTACAGGCAGTATTTTGTGGTTTTGCACGGTTGCTCCC
ATTTTGTTTTTGTTGTATTTTGGACGAACCAAGAGCGGGGTTGGGGTATA
CTCTGTATTACGGATCGGTCCACACGACGACAATATGAACAGCCATAGTA
ACGACAGCAATAACAATAACAATCATAGTAACGACGATGAGTCTGCTCGT
CCTGCTCTCGTGACGAGTACCCCCTCCCCCAGACGCTGGCCGTGCAGTCC
GTGGC back to topCoding sequence (CDS) from alignment at F-serratus_M_contig1013:125038..127242+ >mRNA_F-serratus_M_contig1013.218.1 ID=mRNA_F-serratus_M_contig1013.218.1|Name=mRNA_F-serratus_M_contig1013.218.1|organism=Fucus serratus male|type=CDS|length=798bp|location=Sequence derived from alignment at F-serratus_M_contig1013:125038..127242+ (Fucus serratus male) GGGGATGCTGATGGTGGCGGCGGTCTTGGTGGCGGCGGTGAGAAGGCCAG CGTGAGCGACCCTCGAAGCATGGCACAGCTGCTATTTGGGGTGGTAGAGC CAAGTCCCAAGGAGTGCTACAGGGCGTTTAGGCTGCTGGAGGGGGAGGGT GCGCTGCGTTTCAAGCGCCGGCGAGATGGTCGCTATGAGTGTCGGTCGAG GGGGATGCTGATGGTGGCGGCGGTCTTGGTGGCGGCGGTGAGAAGGCCAG CGTGAGCGACCCTCGAAGCATGGCACAGCTGCTATTTGGGGTGGTAGAGC CAAGTCCCAAGGAGTGCTACAGGGCGTTTAGGCTGCTGGAGGGGGAGGGT GCGCTGCGTTTCAAGCGCCGGCGAGATGGTCGCTATGAGTGTCGGTCGAG GGAGGCGGTGGATTTAGCGCTTCGAAAGATCGAGCTGGACAACGCGGCGA GGGCGAAGAAGGAGAAGTTCGCCGCTGGTCTTCAGGTGGGCCTCCGCGAG GGAGCCGGGAGACGGAAGACGCCTCTTTCTTTGGATGATCTCGCAGAGGA CGAGCGGAAAATGCTAGAGGGGCTTAAGGGAGGCGGTGGATTTAGCGCTT CGAAAGATCGAGCTGGACAACGCGGCGAGGGCGAAGAAGGAGAAGTTCGC CGCTGGTCTTCAGGTGGGCCTCCGCGAGGGAGCCGGGAGACGGAAGACGC CTCTTTCTTTGGATGATCTCGCAGAGGACGAGCGGAAAATGCTAGAGGGG CTTAAGACGCTGGCCGTGCAGTCCGTGACGCTGGCCGTGCAGTCCGTG back to top
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