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Homology
BLAST of mRNA_F-serratus_M_contig1013.216.1 vs. uniprot
Match: A0A6H5KLI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLI5_9PHAE) HSP 1 Score: 175 bits (443), Expect = 2.010e-48 Identity = 124/241 (51.45%), Postives = 152/241 (63.07%), Query Frame = 1
Query: 109 FWKPGEVKPTKED----------VVVRSRGPGGDEANESTSSAGAKDRRHRGCRGGAMRNEKGRVGDREKRDKKDKGKNKRRNRKVGLGGGCALKAKLGLAG------GPSQGLLALKFMQRKTRADEAQRGLQEKRDNLERDFSSSYAKRLKANK-SGKEKER-LVCRPDEQDPALVVLGRRSFGGFNAVAEAAYDACIRDISGGTRLGRSSREGDDDGDDWGEAVSDNEMAERLGKNMR 777
+WKPGE +P + R G +S K RR G RG + + +KR +K KGK +R + GLGG +K ++ A GPSQGLLA+KFMQRK +ADEAQ+ QEKR+ LE DFSSSYAKRLKA+K +GK++ + L+CR DEQDPALVV+GRRSFGGFN VAEAAYDACIRDI G RLGR R G+D G G+ +SD EMAERLGKN+R
Sbjct: 3 YWKPGEKRPGGGEGGXXXXXXXXXXXSDRVSDGQGRTDSKKRVD-KSRRDEGGRGSTDKGNRRSSEGAKKRVRKGKGK-ERHSTGSGLGG---IKGEVSRAASKPPVAGPSQGLLAMKFMQRKAQADEAQKQRQEKREKLESDFSSSYAKRLKADKDTGKDRRKVLICRRDEQDPALVVVGRRSFGGFNVVAEAAYDACIRDIEAGERLGRPGR-GEDAG---GDGISDTEMAERLGKNVR 234
BLAST of mRNA_F-serratus_M_contig1013.216.1 vs. uniprot
Match: D8LLK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK6_ECTSI) HSP 1 Score: 160 bits (406), Expect = 6.230e-43 Identity = 119/236 (50.42%), Postives = 142/236 (60.17%), Query Frame = 1
Query: 109 FWKPGEVKPTKED--------VVVRSRGPGGDEANESTSSAGAK----DRRHRGCRGGAMRNEKGRVGDREKRDKKDKGKNKRRNRKVGLGGGCALKAKLGLAG------GPSQGLLALKFMQRKTRADEAQRGLQEKRDNLERDFSSSYAKRLKANKSGKEKERLVCRPDEQDPALVVLGRRSFGGFNAVAEAAYDACIRDISGGTRLGRSSREGDDDGDDWGEAVSDNEMAERL 762
+WKPGE +P + G DE + S K RR G RG + + +KR KK KGK +R + GLGG +K ++ A GPSQGLLA+KFMQRK +ADEAQ+ QEKR+ LE FSSSYAKRLKA+K K+RL+CR DEQDPALVV+GRRSFGGFN VAEAAYDACIRDI G R+GR R G+D G G +SD EMAER
Sbjct: 3 YWKPGEKRPGGGEGXXXXXXXXXXXGTGRVSDEQGRTDSKKKKKRVDKSRRDGGGRGSTDKGNRRSSEGVKKRVKKGKGK-ERHSTGGGLGG---IKGEVSRAASKPPVAGPSQGLLAMKFMQRKVQADEAQKQRQEKREKLESYFSSSYAKRLKADKDTG-KDRLICRHDEQDPALVVVGRRSFGGFNVVAEAAYDACIRDIEAGERIGRPGR-GEDAG---GGGISDTEMAERF 229
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | M-phase phosphoprotein 6 |
Ec32 ortholog | Ec-04_005450.1 |
Exons | 4 |
Model size | 1347 |
Cds size | 702 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928811.5095987-UTR-F-serratus_M_contig1013:120866..121421 | 1622928811.5095987-UTR-F-serratus_M_contig1013:120866..121421 | Fucus serratus male | UTR | F-serratus_M_contig1013 120867..121421 - |
1690962583.0561707-UTR-F-serratus_M_contig1013:120866..121421 | 1690962583.0561707-UTR-F-serratus_M_contig1013:120866..121421 | Fucus serratus male | UTR | F-serratus_M_contig1013 120867..121421 - |
1622928811.594292-UTR-F-serratus_M_contig1013:124069..124159 | 1622928811.594292-UTR-F-serratus_M_contig1013:124069..124159 | Fucus serratus male | UTR | F-serratus_M_contig1013 124070..124159 - |
1690962583.0984488-UTR-F-serratus_M_contig1013:124069..124159 | 1690962583.0984488-UTR-F-serratus_M_contig1013:124069..124159 | Fucus serratus male | UTR | F-serratus_M_contig1013 124070..124159 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928811.523991-CDS-F-serratus_M_contig1013:121421..121455 | 1622928811.523991-CDS-F-serratus_M_contig1013:121421..121455 | Fucus serratus male | CDS | F-serratus_M_contig1013 121422..121455 - |
1690962583.0658405-CDS-F-serratus_M_contig1013:121421..121455 | 1690962583.0658405-CDS-F-serratus_M_contig1013:121421..121455 | Fucus serratus male | CDS | F-serratus_M_contig1013 121422..121455 - |
1622928811.540946-CDS-F-serratus_M_contig1013:121691..121901 | 1622928811.540946-CDS-F-serratus_M_contig1013:121691..121901 | Fucus serratus male | CDS | F-serratus_M_contig1013 121692..121901 - |
1690962583.0749655-CDS-F-serratus_M_contig1013:121691..121901 | 1690962583.0749655-CDS-F-serratus_M_contig1013:121691..121901 | Fucus serratus male | CDS | F-serratus_M_contig1013 121692..121901 - |
1622928811.5617237-CDS-F-serratus_M_contig1013:122348..122482 | 1622928811.5617237-CDS-F-serratus_M_contig1013:122348..122482 | Fucus serratus male | CDS | F-serratus_M_contig1013 122349..122482 - |
1690962583.0827549-CDS-F-serratus_M_contig1013:122348..122482 | 1690962583.0827549-CDS-F-serratus_M_contig1013:122348..122482 | Fucus serratus male | CDS | F-serratus_M_contig1013 122349..122482 - |
1622928811.5784128-CDS-F-serratus_M_contig1013:123745..124069 | 1622928811.5784128-CDS-F-serratus_M_contig1013:123745..124069 | Fucus serratus male | CDS | F-serratus_M_contig1013 123746..124069 - |
1690962583.0904553-CDS-F-serratus_M_contig1013:123745..124069 | 1690962583.0904553-CDS-F-serratus_M_contig1013:123745..124069 | Fucus serratus male | CDS | F-serratus_M_contig1013 123746..124069 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1013.216.1 >prot_F-serratus_M_contig1013.216.1 ID=prot_F-serratus_M_contig1013.216.1|Name=mRNA_F-serratus_M_contig1013.216.1|organism=Fucus serratus male|type=polypeptide|length=234bp
MESTGKFWKPGEVKPTKEDVVVRSRGPGGDEANESTSSAGAKDRRHRGCR GGAMRNEKGRVGDREKRDKKDKGKNKRRNRKVGLGGGCALKAKLGLAGGP SQGLLALKFMQRKTRADEAQRGLQEKRDNLERDFSSSYAKRLKANKSGKE KERLVCRPDEQDPALVVLGRRSFGGFNAVAEAAYDACIRDISGGTRLGRS SREGDDDGDDWGEAVSDNEMAERLGKNMRGGRR* back to topmRNA from alignment at F-serratus_M_contig1013:120867..124159- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig1013.216.1 ID=mRNA_F-serratus_M_contig1013.216.1|Name=mRNA_F-serratus_M_contig1013.216.1|organism=Fucus serratus male|type=mRNA|length=3293bp|location=Sequence derived from alignment at F-serratus_M_contig1013:120867..124159- (Fucus serratus male) AAGGCTCTCTCACCAAGTCTAGGACTGAGTCTAAGAACGAACTCTGAAGC
TCCACGCCGCCCTTGATCATTTCAGCGTTGGCGAGTGACTATGGAATCAA
CTGGGAAGTTTTGGAAGCCCGGAGAAGTGAAGCCAACTAAGGAGGACGTT
GTGGTTAGGTCCCGCGGTCCGGGCGGCGATGAGGCTAACGAGAGCACATC
CTCCGCCGGAGCTAAGGATCGACGGCATCGAGGATGCCGCGGCGGAGCGA
TGAGGAATGAAAAGGGACGCGTTGGTGACAGGGAGAAGCGTGATAAGAAA
GACAAAGGGAAAAACAAACGGCGAAATCGAAAAGTAGGGCTAGGCGGAGG
GTGTGCTTTGAAGGCGAAGCTAGGACTTGCTGGAGGACCTTCTCAAGGGC
TACTGGCGTTGAAGGTGTAAAAGCAGAGGCGGTCAAGCAACAACAGCGGT
AGTTATTGTAGTGCAAACTGTGGCCATCTTTTCGCAAACACCAGTATAAC
AAAAGTACTTACTCTGTCTGCTATCGAAAGGTGCACGCTTTTTCTCGTCG
CACGCGTGTCCTGCTGTAAGCTTCAATCCTCTGATCTGCTGTGCCTCTGC
GGCAGTACCTCTTAGTATAGGTACTGTACCACTTGTCGCTATACGGTCCT
CGTAGTGACTGTCGCCCCTATAAATGCAGACTATGTATGATACTGGTATG
TATGTATGGTCATCACATATACTCTAGCAGAGAATATGTATCAACCGGGT
AAGGTTGTAAGGTTGCCAATCCCGCTCGTGGTCAGCTGAACAGAGGAAAG
TAATATTTCCCTGTCCCCGTTCGAGGATGAGAATTTGGTCTCGCGAGACG
GGTTCGGCCGTCCCGTCCCGCGTCAACCTGCTCATTCTCAGGCTGATTAT
GGTGCTTACTCACGGGATTCCTACCGATTTTCTGCGGCGGCGTCCATTTA
TTATTTAAACTGCCATCCGCCGTCGGGTCGGTCCCGAGTTTATCAGGTCA
CGCAATTGCGTACCGATGGCATTCACTGCCGAGAGTCCGCCGGCACAGGG
CTAGTAGTCCACATAGTATTTCCAGTAACGGGTGCTTCCATTGCGTCACC
ATGGGACCATTTAATGTGCGCTTCCCTTTTCCCACACCGACTAATGGTAT
GAAGTGGATAACATGTTGAAAGTATCGGAGGCGGAATAGAGCTATATTAT
TAGTTGTTGCCTCGAGGTCACTGACCTAAGTATTAAGAGGGAATATTAAC
CCACCTGACCCTACAGTACTTCAGAACTCGTATACTGGGTCTTCTAGTTT
CGAGGCAGACTGCCCTTTCGTAAAGGCAAACTACTCAACACGAGCTCCCT
GTCACCCGACTTAATCTTTCCTCAAAGTATCGTCCTTGTGAGATCCTACG
TTCGTAGCTGGTCCACGGATCATATTTCTGTACCTAACGGCATTTGCCAT
AGGGGAGAGGCTGCATGAATCCTTCAGCACATATGTAAACAGTGATTCCA
TGGTTACGCTGGGGGACATTTGAAGGTTGGGGGGCTGGAGTACAGCTCAC
AGGCCTACCGTACGACGGACGCCTCCCAGATCCGAGTTGATTACCCTCAG
CACGCATAAACTAATCAATCGCCTTCAACATGTTCATCCTCACCCTCTTT
TTAACTCATCCGCACACAAACCAACAGTTCATGCAGCGCAAAACAAGGGC
AGACGAGGCACAGCGGGGCCTACAGGAAAAGAGGGACAACCTCGAGAGAG
ACTTCAGCTCTTCATACGCAAAACGGCTCAAGGCTAACAAGAGCGGTAAA
GAGAAAGAGCGGTGAGTATCGCATGCATCCCGACCAACACGTGTACCGCA
GCACGGCTTGCACACGATCATGCTGCGTAAGCTATTCAGAGAGGGCAACA
GCTGAAGCATCGTGGCGCCAGGACCGGCGCAGCACCACTTTGAGTTCTTC
CGCTGAAATGTCTCTTTCAAAGAAAAACTCCCTGTTCGTCAGTCCTGAGG
TGTATCCACTTCCTCAGTGCAGCTCATCATTCAACCGTCACCGCGGCTCT
CCTGTGAAGGAACGCCATCCTACACCTCCTCCTACCGGACCGTGCTTTAC
TTTTCGAAAAGTTACTCGTGTCCACGAGCAAGCTCCATGCTTTATTTTTT
GTCACCCTCCTCTTCTTTTCCGCTTACAGACAGTTCGTACTTAAGCGTTT
TTTTTTCTGCCCGCACCCCGTCCCGTCCCCGCCCCCCTCGGTTGACGTCG
CATCCTAGGCTCGTTTGTCGACCGGATGAACAAGACCCGGCGCTCGTGGT
GCTCGGTAGGAGGTCGTTTGGGGGTTTCAATGCGGTCGCAGAGGCGGCGT
ACGATGCGTGCATTAGAGATATTTCCGGGGGAACGCGCTTAGGGCGGTCA
TCGCGGGAGGGAGACGACGACGGCGATGACTGGGGAGAAGCTGTATCGGA
CAATGAGATGGCGGAAAGGTGTGATCCCAGAGACGCAGGCAGCTTGATCG
TTTCGATGTTTGAAACAATGCACATAGATGCGTATCCTTGCGCAAAGGTT
ATTTTGCGACGATCCTCGTTCTTCGTTCCGTCGTGACAACGTTCTGTAAA
ACAAGACGGGGCAATCGATCCATGATTCATTCCTGCTGTGCCGTGTTATT
ATATTATACATTATATATATTATTATCATTATCCTCTTCCTCTTCGCCTT
GTAGGCTCGGCAAGAACATGCGAGGTGGTCGGAGATGACGAAGCACGAGG
CGATCTCGAGAATATTGTGCCGGGGCCGCTTGTCAGCAGCTCTCTCTTGA
CTCCGACGGGATAAGTGAATCGCCGTCCGTTTTCGACCATACCGGCTCGG
GCCGAGGTCATCCTAAGCAGCCCGTGACACCTGAGGGGCTAACCATCCAT
CAGCAGGAGGCGATATTGAAGCGTACCCCATCGTCTACCGTTGAGAGGCG
CTCTACTGCAAGCACCAATATAACCGCCTAGCTTTTTGTCTAGAACGAGA
AAATAACAATAAATACCTGGCCGAACCTATCAAATCCATGCCCCCAAAGT
CAAGAGTCACGAAGTCTTTCGCCGGTCTGCGTGCAGACTAGAATGTAAAC
GGTTTTCTCTGTGAGAGAGAGAGATATCATTGGGCCAGATTTTGCGTTAT
CGCCTCTTGTTCTCTCTTTCTTTCCCTTTGTTTTACTTTCGTTAAATTGC
CCTCGACTCTTCTATTAATAGTAATGATTTCACGGCTCGACACAAGTTCT
CTCGGAAGATGACACAAATCGTGTCGCTGTCGAGTAACGATTG back to topCoding sequence (CDS) from alignment at F-serratus_M_contig1013:120867..124159- >mRNA_F-serratus_M_contig1013.216.1 ID=mRNA_F-serratus_M_contig1013.216.1|Name=mRNA_F-serratus_M_contig1013.216.1|organism=Fucus serratus male|type=CDS|length=1404bp|location=Sequence derived from alignment at F-serratus_M_contig1013:120867..124159- (Fucus serratus male) ATGGAATCAACTGGGAAGTTTTGGAAGCCCGGAGAAGTGAAGCCAACTAA GGAGGACGTTGTGGTTAGGTCCCGCGGTCCGGGCGGCGATGAGGCTAACG AGAGCACATCCTCCGCCGGAGCTAAGGATCGACGGCATCGAGGATGCCGC GGCGGAGCGATGAGGAATGAAAAGGGACGCGTTGGTGACAGGGAGAAGCG TGATAAGAAAGACAAAGGGAAAAACAAACGGCGAAATCGAAAAGTAGGGC TAGGCGGAGGGTGTGCTTTGAAGGCGAAGCTAGGACTTGCTGGAGGACCT TCTCAAGGGCTACTGGCGTTGAAGATGGAATCAACTGGGAAGTTTTGGAA GCCCGGAGAAGTGAAGCCAACTAAGGAGGACGTTGTGGTTAGGTCCCGCG GTCCGGGCGGCGATGAGGCTAACGAGAGCACATCCTCCGCCGGAGCTAAG GATCGACGGCATCGAGGATGCCGCGGCGGAGCGATGAGGAATGAAAAGGG ACGCGTTGGTGACAGGGAGAAGCGTGATAAGAAAGACAAAGGGAAAAACA AACGGCGAAATCGAAAAGTAGGGCTAGGCGGAGGGTGTGCTTTGAAGGCG AAGCTAGGACTTGCTGGAGGACCTTCTCAAGGGCTACTGGCGTTGAAGTT CATGCAGCGCAAAACAAGGGCAGACGAGGCACAGCGGGGCCTACAGGAAA AGAGGGACAACCTCGAGAGAGACTTCAGCTCTTCATACGCAAAACGGCTC AAGGCTAACAAGAGCGGTAAAGAGAAAGAGCGTTCATGCAGCGCAAAACA AGGGCAGACGAGGCACAGCGGGGCCTACAGGAAAAGAGGGACAACCTCGA GAGAGACTTCAGCTCTTCATACGCAAAACGGCTCAAGGCTAACAAGAGCG GTAAAGAGAAAGAGCGGCTCGTTTGTCGACCGGATGAACAAGACCCGGCG CTCGTGGTGCTCGGTAGGAGGTCGTTTGGGGGTTTCAATGCGGTCGCAGA GGCGGCGTACGATGCGTGCATTAGAGATATTTCCGGGGGAACGCGCTTAG GGCGGTCATCGCGGGAGGGAGACGACGACGGCGATGACTGGGGAGAAGCT GTATCGGACAATGAGATGGCGGAAAGGCTCGTTTGTCGACCGGATGAACA AGACCCGGCGCTCGTGGTGCTCGGTAGGAGGTCGTTTGGGGGTTTCAATG CGGTCGCAGAGGCGGCGTACGATGCGTGCATTAGAGATATTTCCGGGGGA ACGCGCTTAGGGCGGTCATCGCGGGAGGGAGACGACGACGGCGATGACTG GGGAGAAGCTGTATCGGACAATGAGATGGCGGAAAGGCTCGGCAAGAACA TGCGAGGTGGTCGGAGATGAGCTCGGCAAGAACATGCGAGGTGGTCGGAG ATGA back to top
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