mRNA_F-serratus_M_contig1013.216.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1013.216.1
Unique NamemRNA_F-serratus_M_contig1013.216.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1013.216.1 vs. uniprot
Match: A0A6H5KLI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLI5_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 2.010e-48
Identity = 124/241 (51.45%), Postives = 152/241 (63.07%), Query Frame = 1 
Query:  109 FWKPGEVKPTKED----------VVVRSRGPGGDEANESTSSAGAKDRRHRGCRGGAMRNEKGRVGDREKRDKKDKGKNKRRNRKVGLGGGCALKAKLGLAG------GPSQGLLALKFMQRKTRADEAQRGLQEKRDNLERDFSSSYAKRLKANK-SGKEKER-LVCRPDEQDPALVVLGRRSFGGFNAVAEAAYDACIRDISGGTRLGRSSREGDDDGDDWGEAVSDNEMAERLGKNMR 777
            +WKPGE +P   +               R   G    +S      K RR  G RG   +  +      +KR +K KGK +R +   GLGG   +K ++  A       GPSQGLLA+KFMQRK +ADEAQ+  QEKR+ LE DFSSSYAKRLKA+K +GK++ + L+CR DEQDPALVV+GRRSFGGFN VAEAAYDACIRDI  G RLGR  R G+D G   G+ +SD EMAERLGKN+R
Sbjct:    3 YWKPGEKRPGGGEGGXXXXXXXXXXXSDRVSDGQGRTDSKKRVD-KSRRDEGGRGSTDKGNRRSSEGAKKRVRKGKGK-ERHSTGSGLGG---IKGEVSRAASKPPVAGPSQGLLAMKFMQRKAQADEAQKQRQEKREKLESDFSSSYAKRLKADKDTGKDRRKVLICRRDEQDPALVVVGRRSFGGFNVVAEAAYDACIRDIEAGERLGRPGR-GEDAG---GDGISDTEMAERLGKNVR 234
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BLAST of mRNA_F-serratus_M_contig1013.216.1 vs. uniprot
Match: D8LLK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK6_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 6.230e-43
Identity = 119/236 (50.42%), Postives = 142/236 (60.17%), Query Frame = 1 
Query:  109 FWKPGEVKPTKED--------VVVRSRGPGGDEANESTSSAGAK----DRRHRGCRGGAMRNEKGRVGDREKRDKKDKGKNKRRNRKVGLGGGCALKAKLGLAG------GPSQGLLALKFMQRKTRADEAQRGLQEKRDNLERDFSSSYAKRLKANKSGKEKERLVCRPDEQDPALVVLGRRSFGGFNAVAEAAYDACIRDISGGTRLGRSSREGDDDGDDWGEAVSDNEMAERL 762
            +WKPGE +P   +              G   DE   + S    K     RR  G RG   +  +      +KR KK KGK +R +   GLGG   +K ++  A       GPSQGLLA+KFMQRK +ADEAQ+  QEKR+ LE  FSSSYAKRLKA+K    K+RL+CR DEQDPALVV+GRRSFGGFN VAEAAYDACIRDI  G R+GR  R G+D G   G  +SD EMAER 
Sbjct:    3 YWKPGEKRPGGGEGXXXXXXXXXXXGTGRVSDEQGRTDSKKKKKRVDKSRRDGGGRGSTDKGNRRSSEGVKKRVKKGKGK-ERHSTGGGLGG---IKGEVSRAASKPPVAGPSQGLLAMKFMQRKVQADEAQKQRQEKREKLESYFSSSYAKRLKADKDTG-KDRLICRHDEQDPALVVVGRRSFGGFNVVAEAAYDACIRDIEAGERIGRPGR-GEDAG---GGGISDTEMAERF 229
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1013.216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLI5_9PHAE2.010e-4851.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLK6_ECTSI6.230e-4350.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1013contigF-serratus_M_contig1013:120867..124159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionM-phase phosphoprotein 6
Ec32 orthologEc-04_005450.1
Exons4
Model size1347
Cds size702
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1013.216.1prot_F-serratus_M_contig1013.216.1Fucus serratus malepolypeptideF-serratus_M_contig1013 121422..124069 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928811.5095987-UTR-F-serratus_M_contig1013:120866..1214211622928811.5095987-UTR-F-serratus_M_contig1013:120866..121421Fucus serratus maleUTRF-serratus_M_contig1013 120867..121421 -
1690962583.0561707-UTR-F-serratus_M_contig1013:120866..1214211690962583.0561707-UTR-F-serratus_M_contig1013:120866..121421Fucus serratus maleUTRF-serratus_M_contig1013 120867..121421 -
1622928811.594292-UTR-F-serratus_M_contig1013:124069..1241591622928811.594292-UTR-F-serratus_M_contig1013:124069..124159Fucus serratus maleUTRF-serratus_M_contig1013 124070..124159 -
1690962583.0984488-UTR-F-serratus_M_contig1013:124069..1241591690962583.0984488-UTR-F-serratus_M_contig1013:124069..124159Fucus serratus maleUTRF-serratus_M_contig1013 124070..124159 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928811.523991-CDS-F-serratus_M_contig1013:121421..1214551622928811.523991-CDS-F-serratus_M_contig1013:121421..121455Fucus serratus maleCDSF-serratus_M_contig1013 121422..121455 -
1690962583.0658405-CDS-F-serratus_M_contig1013:121421..1214551690962583.0658405-CDS-F-serratus_M_contig1013:121421..121455Fucus serratus maleCDSF-serratus_M_contig1013 121422..121455 -
1622928811.540946-CDS-F-serratus_M_contig1013:121691..1219011622928811.540946-CDS-F-serratus_M_contig1013:121691..121901Fucus serratus maleCDSF-serratus_M_contig1013 121692..121901 -
1690962583.0749655-CDS-F-serratus_M_contig1013:121691..1219011690962583.0749655-CDS-F-serratus_M_contig1013:121691..121901Fucus serratus maleCDSF-serratus_M_contig1013 121692..121901 -
1622928811.5617237-CDS-F-serratus_M_contig1013:122348..1224821622928811.5617237-CDS-F-serratus_M_contig1013:122348..122482Fucus serratus maleCDSF-serratus_M_contig1013 122349..122482 -
1690962583.0827549-CDS-F-serratus_M_contig1013:122348..1224821690962583.0827549-CDS-F-serratus_M_contig1013:122348..122482Fucus serratus maleCDSF-serratus_M_contig1013 122349..122482 -
1622928811.5784128-CDS-F-serratus_M_contig1013:123745..1240691622928811.5784128-CDS-F-serratus_M_contig1013:123745..124069Fucus serratus maleCDSF-serratus_M_contig1013 123746..124069 -
1690962583.0904553-CDS-F-serratus_M_contig1013:123745..1240691690962583.0904553-CDS-F-serratus_M_contig1013:123745..124069Fucus serratus maleCDSF-serratus_M_contig1013 123746..124069 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1013.216.1

>prot_F-serratus_M_contig1013.216.1 ID=prot_F-serratus_M_contig1013.216.1|Name=mRNA_F-serratus_M_contig1013.216.1|organism=Fucus serratus male|type=polypeptide|length=234bp
MESTGKFWKPGEVKPTKEDVVVRSRGPGGDEANESTSSAGAKDRRHRGCR
GGAMRNEKGRVGDREKRDKKDKGKNKRRNRKVGLGGGCALKAKLGLAGGP
SQGLLALKFMQRKTRADEAQRGLQEKRDNLERDFSSSYAKRLKANKSGKE
KERLVCRPDEQDPALVVLGRRSFGGFNAVAEAAYDACIRDISGGTRLGRS
SREGDDDGDDWGEAVSDNEMAERLGKNMRGGRR*
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mRNA from alignment at F-serratus_M_contig1013:120867..124159-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1013.216.1 ID=mRNA_F-serratus_M_contig1013.216.1|Name=mRNA_F-serratus_M_contig1013.216.1|organism=Fucus serratus male|type=mRNA|length=3293bp|location=Sequence derived from alignment at F-serratus_M_contig1013:120867..124159- (Fucus serratus male)
AAGGCTCTCTCACCAAGTCTAGGACTGAGTCTAAGAACGAACTCTGAAGC
TCCACGCCGCCCTTGATCATTTCAGCGTTGGCGAGTGACTATGGAATCAA
CTGGGAAGTTTTGGAAGCCCGGAGAAGTGAAGCCAACTAAGGAGGACGTT
GTGGTTAGGTCCCGCGGTCCGGGCGGCGATGAGGCTAACGAGAGCACATC
CTCCGCCGGAGCTAAGGATCGACGGCATCGAGGATGCCGCGGCGGAGCGA
TGAGGAATGAAAAGGGACGCGTTGGTGACAGGGAGAAGCGTGATAAGAAA
GACAAAGGGAAAAACAAACGGCGAAATCGAAAAGTAGGGCTAGGCGGAGG
GTGTGCTTTGAAGGCGAAGCTAGGACTTGCTGGAGGACCTTCTCAAGGGC
TACTGGCGTTGAAGGTGTAAAAGCAGAGGCGGTCAAGCAACAACAGCGGT
AGTTATTGTAGTGCAAACTGTGGCCATCTTTTCGCAAACACCAGTATAAC
AAAAGTACTTACTCTGTCTGCTATCGAAAGGTGCACGCTTTTTCTCGTCG
CACGCGTGTCCTGCTGTAAGCTTCAATCCTCTGATCTGCTGTGCCTCTGC
GGCAGTACCTCTTAGTATAGGTACTGTACCACTTGTCGCTATACGGTCCT
CGTAGTGACTGTCGCCCCTATAAATGCAGACTATGTATGATACTGGTATG
TATGTATGGTCATCACATATACTCTAGCAGAGAATATGTATCAACCGGGT
AAGGTTGTAAGGTTGCCAATCCCGCTCGTGGTCAGCTGAACAGAGGAAAG
TAATATTTCCCTGTCCCCGTTCGAGGATGAGAATTTGGTCTCGCGAGACG
GGTTCGGCCGTCCCGTCCCGCGTCAACCTGCTCATTCTCAGGCTGATTAT
GGTGCTTACTCACGGGATTCCTACCGATTTTCTGCGGCGGCGTCCATTTA
TTATTTAAACTGCCATCCGCCGTCGGGTCGGTCCCGAGTTTATCAGGTCA
CGCAATTGCGTACCGATGGCATTCACTGCCGAGAGTCCGCCGGCACAGGG
CTAGTAGTCCACATAGTATTTCCAGTAACGGGTGCTTCCATTGCGTCACC
ATGGGACCATTTAATGTGCGCTTCCCTTTTCCCACACCGACTAATGGTAT
GAAGTGGATAACATGTTGAAAGTATCGGAGGCGGAATAGAGCTATATTAT
TAGTTGTTGCCTCGAGGTCACTGACCTAAGTATTAAGAGGGAATATTAAC
CCACCTGACCCTACAGTACTTCAGAACTCGTATACTGGGTCTTCTAGTTT
CGAGGCAGACTGCCCTTTCGTAAAGGCAAACTACTCAACACGAGCTCCCT
GTCACCCGACTTAATCTTTCCTCAAAGTATCGTCCTTGTGAGATCCTACG
TTCGTAGCTGGTCCACGGATCATATTTCTGTACCTAACGGCATTTGCCAT
AGGGGAGAGGCTGCATGAATCCTTCAGCACATATGTAAACAGTGATTCCA
TGGTTACGCTGGGGGACATTTGAAGGTTGGGGGGCTGGAGTACAGCTCAC
AGGCCTACCGTACGACGGACGCCTCCCAGATCCGAGTTGATTACCCTCAG
CACGCATAAACTAATCAATCGCCTTCAACATGTTCATCCTCACCCTCTTT
TTAACTCATCCGCACACAAACCAACAGTTCATGCAGCGCAAAACAAGGGC
AGACGAGGCACAGCGGGGCCTACAGGAAAAGAGGGACAACCTCGAGAGAG
ACTTCAGCTCTTCATACGCAAAACGGCTCAAGGCTAACAAGAGCGGTAAA
GAGAAAGAGCGGTGAGTATCGCATGCATCCCGACCAACACGTGTACCGCA
GCACGGCTTGCACACGATCATGCTGCGTAAGCTATTCAGAGAGGGCAACA
GCTGAAGCATCGTGGCGCCAGGACCGGCGCAGCACCACTTTGAGTTCTTC
CGCTGAAATGTCTCTTTCAAAGAAAAACTCCCTGTTCGTCAGTCCTGAGG
TGTATCCACTTCCTCAGTGCAGCTCATCATTCAACCGTCACCGCGGCTCT
CCTGTGAAGGAACGCCATCCTACACCTCCTCCTACCGGACCGTGCTTTAC
TTTTCGAAAAGTTACTCGTGTCCACGAGCAAGCTCCATGCTTTATTTTTT
GTCACCCTCCTCTTCTTTTCCGCTTACAGACAGTTCGTACTTAAGCGTTT
TTTTTTCTGCCCGCACCCCGTCCCGTCCCCGCCCCCCTCGGTTGACGTCG
CATCCTAGGCTCGTTTGTCGACCGGATGAACAAGACCCGGCGCTCGTGGT
GCTCGGTAGGAGGTCGTTTGGGGGTTTCAATGCGGTCGCAGAGGCGGCGT
ACGATGCGTGCATTAGAGATATTTCCGGGGGAACGCGCTTAGGGCGGTCA
TCGCGGGAGGGAGACGACGACGGCGATGACTGGGGAGAAGCTGTATCGGA
CAATGAGATGGCGGAAAGGTGTGATCCCAGAGACGCAGGCAGCTTGATCG
TTTCGATGTTTGAAACAATGCACATAGATGCGTATCCTTGCGCAAAGGTT
ATTTTGCGACGATCCTCGTTCTTCGTTCCGTCGTGACAACGTTCTGTAAA
ACAAGACGGGGCAATCGATCCATGATTCATTCCTGCTGTGCCGTGTTATT
ATATTATACATTATATATATTATTATCATTATCCTCTTCCTCTTCGCCTT
GTAGGCTCGGCAAGAACATGCGAGGTGGTCGGAGATGACGAAGCACGAGG
CGATCTCGAGAATATTGTGCCGGGGCCGCTTGTCAGCAGCTCTCTCTTGA
CTCCGACGGGATAAGTGAATCGCCGTCCGTTTTCGACCATACCGGCTCGG
GCCGAGGTCATCCTAAGCAGCCCGTGACACCTGAGGGGCTAACCATCCAT
CAGCAGGAGGCGATATTGAAGCGTACCCCATCGTCTACCGTTGAGAGGCG
CTCTACTGCAAGCACCAATATAACCGCCTAGCTTTTTGTCTAGAACGAGA
AAATAACAATAAATACCTGGCCGAACCTATCAAATCCATGCCCCCAAAGT
CAAGAGTCACGAAGTCTTTCGCCGGTCTGCGTGCAGACTAGAATGTAAAC
GGTTTTCTCTGTGAGAGAGAGAGATATCATTGGGCCAGATTTTGCGTTAT
CGCCTCTTGTTCTCTCTTTCTTTCCCTTTGTTTTACTTTCGTTAAATTGC
CCTCGACTCTTCTATTAATAGTAATGATTTCACGGCTCGACACAAGTTCT
CTCGGAAGATGACACAAATCGTGTCGCTGTCGAGTAACGATTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1013:120867..124159-

>mRNA_F-serratus_M_contig1013.216.1 ID=mRNA_F-serratus_M_contig1013.216.1|Name=mRNA_F-serratus_M_contig1013.216.1|organism=Fucus serratus male|type=CDS|length=1404bp|location=Sequence derived from alignment at F-serratus_M_contig1013:120867..124159- (Fucus serratus male)
ATGGAATCAACTGGGAAGTTTTGGAAGCCCGGAGAAGTGAAGCCAACTAA
GGAGGACGTTGTGGTTAGGTCCCGCGGTCCGGGCGGCGATGAGGCTAACG
AGAGCACATCCTCCGCCGGAGCTAAGGATCGACGGCATCGAGGATGCCGC
GGCGGAGCGATGAGGAATGAAAAGGGACGCGTTGGTGACAGGGAGAAGCG
TGATAAGAAAGACAAAGGGAAAAACAAACGGCGAAATCGAAAAGTAGGGC
TAGGCGGAGGGTGTGCTTTGAAGGCGAAGCTAGGACTTGCTGGAGGACCT
TCTCAAGGGCTACTGGCGTTGAAGATGGAATCAACTGGGAAGTTTTGGAA
GCCCGGAGAAGTGAAGCCAACTAAGGAGGACGTTGTGGTTAGGTCCCGCG
GTCCGGGCGGCGATGAGGCTAACGAGAGCACATCCTCCGCCGGAGCTAAG
GATCGACGGCATCGAGGATGCCGCGGCGGAGCGATGAGGAATGAAAAGGG
ACGCGTTGGTGACAGGGAGAAGCGTGATAAGAAAGACAAAGGGAAAAACA
AACGGCGAAATCGAAAAGTAGGGCTAGGCGGAGGGTGTGCTTTGAAGGCG
AAGCTAGGACTTGCTGGAGGACCTTCTCAAGGGCTACTGGCGTTGAAGTT
CATGCAGCGCAAAACAAGGGCAGACGAGGCACAGCGGGGCCTACAGGAAA
AGAGGGACAACCTCGAGAGAGACTTCAGCTCTTCATACGCAAAACGGCTC
AAGGCTAACAAGAGCGGTAAAGAGAAAGAGCGTTCATGCAGCGCAAAACA
AGGGCAGACGAGGCACAGCGGGGCCTACAGGAAAAGAGGGACAACCTCGA
GAGAGACTTCAGCTCTTCATACGCAAAACGGCTCAAGGCTAACAAGAGCG
GTAAAGAGAAAGAGCGGCTCGTTTGTCGACCGGATGAACAAGACCCGGCG
CTCGTGGTGCTCGGTAGGAGGTCGTTTGGGGGTTTCAATGCGGTCGCAGA
GGCGGCGTACGATGCGTGCATTAGAGATATTTCCGGGGGAACGCGCTTAG
GGCGGTCATCGCGGGAGGGAGACGACGACGGCGATGACTGGGGAGAAGCT
GTATCGGACAATGAGATGGCGGAAAGGCTCGTTTGTCGACCGGATGAACA
AGACCCGGCGCTCGTGGTGCTCGGTAGGAGGTCGTTTGGGGGTTTCAATG
CGGTCGCAGAGGCGGCGTACGATGCGTGCATTAGAGATATTTCCGGGGGA
ACGCGCTTAGGGCGGTCATCGCGGGAGGGAGACGACGACGGCGATGACTG
GGGAGAAGCTGTATCGGACAATGAGATGGCGGAAAGGCTCGGCAAGAACA
TGCGAGGTGGTCGGAGATGAGCTCGGCAAGAACATGCGAGGTGGTCGGAG
ATGA
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