mRNA_F-serratus_M_contig1010.213.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1010.213.1
Unique NamemRNA_F-serratus_M_contig1010.213.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1010.213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1010contigF-serratus_M_contig1010:296312..297506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size397
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928808.4753401-CDS-F-serratus_M_contig1010:296313..2966091622928808.4753401-CDS-F-serratus_M_contig1010:296313..296609Fucus serratus maleCDSF-serratus_M_contig1010 296314..296609 -
1690962581.765893-CDS-F-serratus_M_contig1010:296313..2966091690962581.765893-CDS-F-serratus_M_contig1010:296313..296609Fucus serratus maleCDSF-serratus_M_contig1010 296314..296609 -
1622928808.485073-CDS-F-serratus_M_contig1010:297409..2975061622928808.485073-CDS-F-serratus_M_contig1010:297409..297506Fucus serratus maleCDSF-serratus_M_contig1010 297410..297506 -
1690962581.7742808-CDS-F-serratus_M_contig1010:297409..2975061690962581.7742808-CDS-F-serratus_M_contig1010:297409..297506Fucus serratus maleCDSF-serratus_M_contig1010 297410..297506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1010.213.1prot_F-serratus_M_contig1010.213.1Fucus serratus malepolypeptideF-serratus_M_contig1010 296314..297506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1010.213.1

>prot_F-serratus_M_contig1010.213.1 ID=prot_F-serratus_M_contig1010.213.1|Name=mRNA_F-serratus_M_contig1010.213.1|organism=Fucus serratus male|type=polypeptide|length=131bp
SPESNANEEGLRTFVESTIFSNYRKELSSLITPFDSMSSAASSSGSSKTE
SKTATGTASPHRSGRAPTTSSPVTSTTLREAAGSDNVRSRGLRPVAPVPP
RVPLGGSPPAHLACFRGSWEELAPSLQARLR
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mRNA from alignment at F-serratus_M_contig1010:296312..297506-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1010.213.1 ID=mRNA_F-serratus_M_contig1010.213.1|Name=mRNA_F-serratus_M_contig1010.213.1|organism=Fucus serratus male|type=mRNA|length=1195bp|location=Sequence derived from alignment at F-serratus_M_contig1010:296312..297506- (Fucus serratus male)
TCTCCTGAAAGCAACGCTAACGAAGAAGGTTTACGGACGTTTGTGGAATC
TACGATCTTCAGCAATTACCGCAAGGAACTATCTTCATTAATTACGCGTG
AGTTCCTGTCAAAGCCCTAGGTCAAGCCTCATAATATTTGGCGTCTTCGT
GTTTCCTTGCTCAAATTTAGCTTTTGGTCCGTCCCACGATTACCCTGAAC
CTGCACGATCAGACTCGTCCCTAGCGTTTTTCTTGGCTAGTAGTTTCGAT
CCCCTCTTCGTTCCCCTCACCGCTTCGAGCATGTTGCCCCAGCGTTCCCC
TGTTGCTTCACCCGAGCCCATCGAACTCACTGTACTATCGCCCCACAGTA
CCATACCTAGTACCTTGTCTGTCCCTCCTGGACCGTCTATATCAGCTGAC
GATTCGACACAGACAGTCGCGCAGTTTGGGCGCCAGCTTTTGGCCATACT
TTCCGATATCGATGCTTCACCATCGCAGCCCGCTAGCCCTGAATCAGTTT
TGCTTTCGCCCGTTACCGATAGAGCCCTCCGCTACCAACGCCGAGAGGCT
TCCCGTACGGATCGACCTGCCGTCGCATCTGACTCTCCCCATAGCCCTAT
TGCGACCTTTAACCCATCCGATAGTTTTCGCGCCCAAATTCTCGGTCAGT
CCCGTTTAATGGCGACGGACACCTGCCCGAGGGAGCCACTGCCTCTCAAT
ATCCCAGACACACTGTCACCTACCAGGTATATACTTTGAACAACATTATC
CGCCGCACATCCATAGTCACTTTCGAACGACTACACCTGCCTCGTTTCCT
CGCAGAACCAAGTCCACTCCGACGTCTGACAACCGCCCCTCTTCCGCCGT
TCCCTCCCGTCCCTCCCGCGCCCTTTCCCCTTTCCGCCCTTCTCGAGCTT
TCGACAGCATGTCTTCCGCTGCCTCATCGTCCGGTTCGTCGAAAACGGAA
TCCAAGACCGCCACGGGGACTGCCTCTCCCCACCGCTCCGGTCGGGCGCC
CACCACCTCTTCCCCGGTGACATCCACCACCCTGCGCGAGGCGGCCGGTT
CCGACAACGTCCGGTCTCGCGGGCTACGCCCTGTGGCTCCCGTTCCACCA
CGGGTCCCTCTCGGTGGATCACCCCCCGCTCACCTCGCCTGCTTCCGCGG
ATCTTGGGAGGAGCTCGCACCATCCCTCCAGGCCCGGCTTCGAGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1010:296312..297506-

>mRNA_F-serratus_M_contig1010.213.1 ID=mRNA_F-serratus_M_contig1010.213.1|Name=mRNA_F-serratus_M_contig1010.213.1|organism=Fucus serratus male|type=CDS|length=786bp|location=Sequence derived from alignment at F-serratus_M_contig1010:296312..297506- (Fucus serratus male)
TCTCCTGAAAGCAACGCTAACGAAGAAGGTTTACGGACGTTTGTGGAATC
TACGATCTTCAGCAATTACCGCAAGGAACTATCTTCATTAATTACGCTCT
CCTGAAAGCAACGCTAACGAAGAAGGTTTACGGACGTTTGTGGAATCTAC
GATCTTCAGCAATTACCGCAAGGAACTATCTTCATTAATTACGCCTTTCG
ACAGCATGTCTTCCGCTGCCTCATCGTCCGGTTCGTCGAAAACGGAATCC
AAGACCGCCACGGGGACTGCCTCTCCCCACCGCTCCGGTCGGGCGCCCAC
CACCTCTTCCCCGGTGACATCCACCACCCTGCGCGAGGCGGCCGGTTCCG
ACAACGTCCGGTCTCGCGGGCTACGCCCTGTGGCTCCCGTTCCACCACGG
GTCCCTCTCGGTGGATCACCCCCCGCTCACCTCGCCTGCTTCCGCGGATC
TTGGGAGGAGCTCGCACCATCCCTCCAGGCCCGGCTTCGACTTTCGACAG
CATGTCTTCCGCTGCCTCATCGTCCGGTTCGTCGAAAACGGAATCCAAGA
CCGCCACGGGGACTGCCTCTCCCCACCGCTCCGGTCGGGCGCCCACCACC
TCTTCCCCGGTGACATCCACCACCCTGCGCGAGGCGGCCGGTTCCGACAA
CGTCCGGTCTCGCGGGCTACGCCCTGTGGCTCCCGTTCCACCACGGGTCC
CTCTCGGTGGATCACCCCCCGCTCACCTCGCCTGCTTCCGCGGATCTTGG
GAGGAGCTCGCACCATCCCTCCAGGCCCGGCTTCGA
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