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Homology
BLAST of mRNA_F-serratus_M_contig101.194.1 vs. uniprot
Match: A0A6H5L4C9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C9_9PHAE) HSP 1 Score: 59.7 bits (143), Expect = 7.030e-6 Identity = 80/223 (35.87%), Postives = 101/223 (45.29%), Query Frame = 1
Query: 238 LPLEKLFRESFASVNDVLSFTSRGTKPA------SRASEGNG--ESSTPATPVPEKGRMPQVRWGD-SQTGRCTDSPAPCFLGPLS-HSTKTAAASPQENVESDDSGAAT------------------------GGSNAALLGVSR---GEGAEVGRGAIEEESRAVAPDR-SGATERGFGRG-----SELSAEVTGMLHQYSEMMLKVMQEKLEARIADGTL 777
L LE FRESFASV +LS + PA S AS G SS+ + VP GD S TG T L +S H T ++S ++ E D G A+ GGS + GV G AE +E A A D+ +G+ E GR +L AE+TGMLH+YSEMMLKV+QEK+EAR+ DGTL
Sbjct: 1667 LALETSFRESFASVYGILSVMAGKAIPAACLISPSLASIGGSCANSSSGSGAVP----------GDASNTGSTTSG----RLAAMSKHKIGTESSSSHQSAERDRGGLASPPGLSLSVLPPPSRRALARETASPGGSETIVGGVRAVIPGTAAEK----VEALPAAEAGDKGAGSVESRSGRALGGAEEQLPAEMTGMLHRYSEMMLKVVQEKMEARMNDGTL 1871
BLAST of mRNA_F-serratus_M_contig101.194.1 vs. uniprot
Match: D7FN20_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN20_ECTSI) HSP 1 Score: 59.7 bits (143), Expect = 7.230e-6 Identity = 72/237 (30.38%), Postives = 96/237 (40.51%), Query Frame = 1
Query: 211 GPSTLRDSI--LPLEKLFRESFASVNDVLSFTSRGTKPASRASEGNGESSTPATPVPEK--GRMPQVRWGDSQTGRCTDSPAPCFLGPLS----HSTKTAAASPQENVESDDSGAAT-------------------------------GGSNAALLGVSR--------GEGAEVGRGAIEEESRAVAPDRSGATERGFGRGSE-LSAEVTGMLHQYSEMMLKVMQEKLEARIADGTL 777
G +RD + L LE+ FRESFA VN +LS + PA+ +PA+P P G G G L+ H T ++S ++ E D G A+ GG A + G + E + G G++E SR R G E L AE+TGMLH+YSEMMLKV+QEK+EAR+ DGTL
Sbjct: 2203 GQGGVRDGLGQLALERSFRESFACVNGILSVMAGKGIPAA----------SPASPSPASIGGSCANSSSGSGXXXXXXXXXXXTTGGRLAAMSKHKIGTESSSSHQSAERDRGGLASPPGLSLSFLPPPPRRAQAREMASPGGSETIVGGLRAVIPGTTAEKVEALPVAEAGDKGAGSVESRSR-----------RALGGAEEQLPAEMTGMLHRYSEMMLKVVQEKMEARMNDGTL 2418
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 63.2 |
Seed ortholog evalue | 1.7e-07 |
Seed eggNOG ortholog | 2880.D7FN20 |
Preferred name | WDR90 |
KEGG ko | ko:K14962,ko:K21763 |
KEGG Pathway | ko03015,map03015 |
Hectar predicted targeting category | other localisation |
EggNOG free text desc. | Mitogen-activated protein |
EggNOG OGs | KOG1408@1,KOG1408@2759 |
COG Functional cat. | S |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko00001,ko03019,ko03036 |
Exons | 3 |
Model size | 1165 |
Cds size | 606 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928807.6410925-UTR-F-serratus_M_contig101:211700..212073 | 1622928807.6410925-UTR-F-serratus_M_contig101:211700..212073 | Fucus serratus male | UTR | F-serratus_M_contig101 211701..212073 - |
1690962581.4299412-UTR-F-serratus_M_contig101:211700..212073 | 1690962581.4299412-UTR-F-serratus_M_contig101:211700..212073 | Fucus serratus male | UTR | F-serratus_M_contig101 211701..212073 - |
1622928807.690211-UTR-F-serratus_M_contig101:213069..213221 | 1622928807.690211-UTR-F-serratus_M_contig101:213069..213221 | Fucus serratus male | UTR | F-serratus_M_contig101 213070..213221 - |
1690962581.4588883-UTR-F-serratus_M_contig101:213069..213221 | 1690962581.4588883-UTR-F-serratus_M_contig101:213069..213221 | Fucus serratus male | UTR | F-serratus_M_contig101 213070..213221 - |
1622928807.7038574-UTR-F-serratus_M_contig101:213411..213445 | 1622928807.7038574-UTR-F-serratus_M_contig101:213411..213445 | Fucus serratus male | UTR | F-serratus_M_contig101 213412..213445 - |
1690962581.466249-UTR-F-serratus_M_contig101:213411..213445 | 1690962581.466249-UTR-F-serratus_M_contig101:213411..213445 | Fucus serratus male | UTR | F-serratus_M_contig101 213412..213445 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928807.6574054-CDS-F-serratus_M_contig101:212073..212124 | 1622928807.6574054-CDS-F-serratus_M_contig101:212073..212124 | Fucus serratus male | CDS | F-serratus_M_contig101 212074..212124 - |
1690962581.4430656-CDS-F-serratus_M_contig101:212073..212124 | 1690962581.4430656-CDS-F-serratus_M_contig101:212073..212124 | Fucus serratus male | CDS | F-serratus_M_contig101 212074..212124 - |
1622928807.6783118-CDS-F-serratus_M_contig101:212514..213069 | 1622928807.6783118-CDS-F-serratus_M_contig101:212514..213069 | Fucus serratus male | CDS | F-serratus_M_contig101 212515..213069 - |
1690962581.4517758-CDS-F-serratus_M_contig101:212514..213069 | 1690962581.4517758-CDS-F-serratus_M_contig101:212514..213069 | Fucus serratus male | CDS | F-serratus_M_contig101 212515..213069 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig101.194.1 >prot_F-serratus_M_contig101.194.1 ID=prot_F-serratus_M_contig101.194.1|Name=mRNA_F-serratus_M_contig101.194.1|organism=Fucus serratus male|type=polypeptide|length=202bp
MQPKTAINGPSTLRDSILPLEKLFRESFASVNDVLSFTSRGTKPASRASE GNGESSTPATPVPEKGRMPQVRWGDSQTGRCTDSPAPCFLGPLSHSTKTA AASPQENVESDDSGAATGGSNAALLGVSRGEGAEVGRGAIEEESRAVAPD RSGATERGFGRGSELSAEVTGMLHQYSEMMLKVMQEKLEARIADGTLRRN P* back to topmRNA from alignment at F-serratus_M_contig101:211701..213445- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig101.194.1 ID=mRNA_F-serratus_M_contig101.194.1|Name=mRNA_F-serratus_M_contig101.194.1|organism=Fucus serratus male|type=mRNA|length=1745bp|location=Sequence derived from alignment at F-serratus_M_contig101:211701..213445- (Fucus serratus male) GCACGCTCTCATCACTTCGATCCAACATCACCAGGTGGAGTTGGTTTGTG
GCAACAGGGAAATGCTGAGCTGGTGCGCTTACCTGTGCATTGTGTGGGGT
ATCACATATCATGGTTGCCGCGTTCGTATTTCCGGGACAACTCGTCGAGA
GTTAATGGATCCGGAGTTGGGACATTACCGCTCGTCAACCCAGAGTGTTG
TTCTCTTGTATGCTTGTCGTCCAGGAATCAGCGGGTGTGGACGCGTGAGG
GAGATTGCCCGAGAGACATTGACAGAAGGAGAACAAGCTGCAGCAGCATA
TGAACGGGGTGACGACGGGGAAGAAGGCCTATACGAAGACGATGAGTGGG
AACCCGGCGATAAGGAAACAAACGCCATGCAGCCGAAAACGGCAATAAAC
GGCCCGTCGACTCTCCGGGATAGCATTCTTCCCCTAGAAAAGTTATTCCG
CGAGAGCTTTGCGTCAGTCAATGACGTACTATCCTTCACCTCCAGGGGCA
CGAAGCCTGCCTCGAGGGCATCAGAGGGGAATGGCGAGAGCTCGACACCA
GCTACGCCTGTCCCCGAGAAAGGCAGAATGCCCCAGGTAAGATGGGGCGA
CTCGCAGACAGGGCGGTGCACGGATTCCCCGGCTCCTTGTTTCCTGGGCC
CCCTTTCCCACTCCACGAAAACCGCCGCGGCATCGCCGCAAGAAAATGTT
GAGAGCGACGATTCCGGAGCAGCAACGGGCGGGTCAAACGCGGCGTTGTT
GGGGGTGTCGAGAGGTGAAGGTGCTGAAGTAGGACGCGGGGCGATCGAGG
AGGAGAGCAGGGCTGTTGCCCCCGATCGCTCAGGGGCGACGGAGAGAGGC
TTCGGTCGTGGGTCGGAACTGTCGGCTGAGGTCACGGGCATGCTTCACCA
ATACTCCGAGATGATGCTGAAGGTGATGCAGGTGAGTCTGGATTCGTGTG
CATGCCCAGAATTCCCCAACACTCTACTGTGTATTAAAATAAAATCTTTC
TACGAGTGAGCCTCGCGATAAACGCCGTTTCCCGGCATGAGCAGCGTACC
AGCTAGAATCGATGCTGCTAGAGAAAGAATGCGCTTCGGTGAGACATTTC
GCCGCATTGTATCAACCAAGACTGGGTAATTGCCACCCAGACAAGTATTT
TCGAGCGAGTGCTGGGTTCATAGACTCGGGAAACACCTCCATCTTCTTGG
GAGATCAGGTTGCGAGGTTGACCACTGCGTGATGTTTGAAGCGCAGTTCG
CGCAACAATAAATACAAAAGCTGAAAGTGGTGAATCTTCTCCACGTAACG
GCAATTTGCACGACCAATCAGGAAAAATTGGAGGCCAGGATTGCGGACGG
GACACTTCGACGTAACCCCTGACGCTGGTCGGAAAAGGTTTCTGTCGCCC
ACTTGGCGGGCGGTGGGGTGTGGGTAGAAAGGGAAACCGCAAATCCGTAA
GCAACCCGCCCGGAGGAGAGCGATTCGCACGCATTGGGCGCTAAGCTCGG
GAAATGGAGGCAAAATTTGTTGTTATTTAAATCTTCCGCAGTAGATGACC
TCGTTTTTGGAACATGGGAGGGGATGGGGGAAAACATCCCCGGCTAATGT
CTGAAAGAATATGGCAGCCTACTTGGCGTACGAGGTTGACGTATTGAATA
TATAATGAACGATTATTGCCGGGTTTCAACTGGTTTTGGGTTGATCCCTA
AGGGAAGTTGAGAAAACGCAAGAATAAGAGATGGCCCGAAAAATC back to topCoding sequence (CDS) from alignment at F-serratus_M_contig101:211701..213445- >mRNA_F-serratus_M_contig101.194.1 ID=mRNA_F-serratus_M_contig101.194.1|Name=mRNA_F-serratus_M_contig101.194.1|organism=Fucus serratus male|type=CDS|length=1212bp|location=Sequence derived from alignment at F-serratus_M_contig101:211701..213445- (Fucus serratus male) ATGCAGCCGAAAACGGCAATAAACGGCCCGTCGACTCTCCGGGATAGCAT TCTTCCCCTAGAAAAGTTATTCCGCGAGAGCTTTGCGTCAGTCAATGACG TACTATCCTTCACCTCCAGGGGCACGAAGCCTGCCTCGAGGGCATCAGAG GGGAATGGCGAGAGCTCGACACCAGCTACGCCTGTCCCCGAGAAAGGCAG AATGCCCCAGGTAAGATGGGGCGACTCGCAGACAGGGCGGTGCACGGATT CCCCGGCTCCTTGTTTCCTGGGCCCCCTTTCCCACTCCACGAAAACCGCC GCGGCATCGCCGCAAGAAAATGTTGAGAGCGACGATTCCGGAGCAGCAAC GGGCGGGTCAAACGCGGCGTTGTTGGGGGTGTCGAGAGGTGAAGGTGCTG AAGTAGGACGCGGGGCGATCGAGGAGGAGAGCAGGGCTGTTGCCCCCGAT CGCTCAGGGGCGACGGAGAGAGGCTTCGGTCGTGGGTCGGAACTGTCGGC TGAGGTCACGGGCATGCTTCACCAATACTCCGAGATGATGCTGAAGGTGA TGCAGATGCAGCCGAAAACGGCAATAAACGGCCCGTCGACTCTCCGGGAT AGCATTCTTCCCCTAGAAAAGTTATTCCGCGAGAGCTTTGCGTCAGTCAA TGACGTACTATCCTTCACCTCCAGGGGCACGAAGCCTGCCTCGAGGGCAT CAGAGGGGAATGGCGAGAGCTCGACACCAGCTACGCCTGTCCCCGAGAAA GGCAGAATGCCCCAGGTAAGATGGGGCGACTCGCAGACAGGGCGGTGCAC GGATTCCCCGGCTCCTTGTTTCCTGGGCCCCCTTTCCCACTCCACGAAAA CCGCCGCGGCATCGCCGCAAGAAAATGTTGAGAGCGACGATTCCGGAGCA GCAACGGGCGGGTCAAACGCGGCGTTGTTGGGGGTGTCGAGAGGTGAAGG TGCTGAAGTAGGACGCGGGGCGATCGAGGAGGAGAGCAGGGCTGTTGCCC CCGATCGCTCAGGGGCGACGGAGAGAGGCTTCGGTCGTGGGTCGGAACTG TCGGCTGAGGTCACGGGCATGCTTCACCAATACTCCGAGATGATGCTGAA GGTGATGCAGGAAAAATTGGAGGCCAGGATTGCGGACGGGACACTTCGAC GTAACCCCTGAGAAAAATTGGAGGCCAGGATTGCGGACGGGACACTTCGA CGTAACCCCTGA back to top
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