mRNA_F-serratus_M_contig101.194.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig101.194.1
Unique NamemRNA_F-serratus_M_contig101.194.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig101.194.1 vs. uniprot
Match: A0A6H5L4C9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C9_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 7.030e-6
Identity = 80/223 (35.87%), Postives = 101/223 (45.29%), Query Frame = 1 
Query:  238 LPLEKLFRESFASVNDVLSFTSRGTKPA------SRASEGNG--ESSTPATPVPEKGRMPQVRWGD-SQTGRCTDSPAPCFLGPLS-HSTKTAAASPQENVESDDSGAAT------------------------GGSNAALLGVSR---GEGAEVGRGAIEEESRAVAPDR-SGATERGFGRG-----SELSAEVTGMLHQYSEMMLKVMQEKLEARIADGTL 777
            L LE  FRESFASV  +LS  +    PA      S AS G     SS+ +  VP          GD S TG  T       L  +S H   T ++S  ++ E D  G A+                        GGS   + GV     G  AE     +E    A A D+ +G+ E   GR       +L AE+TGMLH+YSEMMLKV+QEK+EAR+ DGTL
Sbjct: 1667 LALETSFRESFASVYGILSVMAGKAIPAACLISPSLASIGGSCANSSSGSGAVP----------GDASNTGSTTSG----RLAAMSKHKIGTESSSSHQSAERDRGGLASPPGLSLSVLPPPSRRALARETASPGGSETIVGGVRAVIPGTAAEK----VEALPAAEAGDKGAGSVESRSGRALGGAEEQLPAEMTGMLHRYSEMMLKVVQEKMEARMNDGTL 1871
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BLAST of mRNA_F-serratus_M_contig101.194.1 vs. uniprot
Match: D7FN20_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN20_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 7.230e-6
Identity = 72/237 (30.38%), Postives = 96/237 (40.51%), Query Frame = 1 
Query:  211 GPSTLRDSI--LPLEKLFRESFASVNDVLSFTSRGTKPASRASEGNGESSTPATPVPEK--GRMPQVRWGDSQTGRCTDSPAPCFLGPLS----HSTKTAAASPQENVESDDSGAAT-------------------------------GGSNAALLGVSR--------GEGAEVGRGAIEEESRAVAPDRSGATERGFGRGSE-LSAEVTGMLHQYSEMMLKVMQEKLEARIADGTL 777
            G   +RD +  L LE+ FRESFA VN +LS  +    PA+          +PA+P P    G       G                G L+    H   T ++S  ++ E D  G A+                               GG  A + G +          E  + G G++E  SR           R  G   E L AE+TGMLH+YSEMMLKV+QEK+EAR+ DGTL
Sbjct: 2203 GQGGVRDGLGQLALERSFRESFACVNGILSVMAGKGIPAA----------SPASPSPASIGGSCANSSSGSGXXXXXXXXXXXTTGGRLAAMSKHKIGTESSSSHQSAERDRGGLASPPGLSLSFLPPPPRRAQAREMASPGGSETIVGGLRAVIPGTTAEKVEALPVAEAGDKGAGSVESRSR-----------RALGGAEEQLPAEMTGMLHRYSEMMLKVVQEKMEARMNDGTL 2418
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig101.194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4C9_9PHAE7.030e-635.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN20_ECTSI7.230e-630.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig101contigF-serratus_M_contig101:211701..213445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue1.7e-07
Seed eggNOG ortholog2880.D7FN20
Preferred nameWDR90
KEGG koko:K14962,ko:K21763
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitogen-activated protein
EggNOG OGsKOG1408@1,KOG1408@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03036
Exons3
Model size1165
Cds size606
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig101.194.1prot_F-serratus_M_contig101.194.1Fucus serratus malepolypeptideF-serratus_M_contig101 212074..213069 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928807.6410925-UTR-F-serratus_M_contig101:211700..2120731622928807.6410925-UTR-F-serratus_M_contig101:211700..212073Fucus serratus maleUTRF-serratus_M_contig101 211701..212073 -
1690962581.4299412-UTR-F-serratus_M_contig101:211700..2120731690962581.4299412-UTR-F-serratus_M_contig101:211700..212073Fucus serratus maleUTRF-serratus_M_contig101 211701..212073 -
1622928807.690211-UTR-F-serratus_M_contig101:213069..2132211622928807.690211-UTR-F-serratus_M_contig101:213069..213221Fucus serratus maleUTRF-serratus_M_contig101 213070..213221 -
1690962581.4588883-UTR-F-serratus_M_contig101:213069..2132211690962581.4588883-UTR-F-serratus_M_contig101:213069..213221Fucus serratus maleUTRF-serratus_M_contig101 213070..213221 -
1622928807.7038574-UTR-F-serratus_M_contig101:213411..2134451622928807.7038574-UTR-F-serratus_M_contig101:213411..213445Fucus serratus maleUTRF-serratus_M_contig101 213412..213445 -
1690962581.466249-UTR-F-serratus_M_contig101:213411..2134451690962581.466249-UTR-F-serratus_M_contig101:213411..213445Fucus serratus maleUTRF-serratus_M_contig101 213412..213445 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928807.6574054-CDS-F-serratus_M_contig101:212073..2121241622928807.6574054-CDS-F-serratus_M_contig101:212073..212124Fucus serratus maleCDSF-serratus_M_contig101 212074..212124 -
1690962581.4430656-CDS-F-serratus_M_contig101:212073..2121241690962581.4430656-CDS-F-serratus_M_contig101:212073..212124Fucus serratus maleCDSF-serratus_M_contig101 212074..212124 -
1622928807.6783118-CDS-F-serratus_M_contig101:212514..2130691622928807.6783118-CDS-F-serratus_M_contig101:212514..213069Fucus serratus maleCDSF-serratus_M_contig101 212515..213069 -
1690962581.4517758-CDS-F-serratus_M_contig101:212514..2130691690962581.4517758-CDS-F-serratus_M_contig101:212514..213069Fucus serratus maleCDSF-serratus_M_contig101 212515..213069 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig101.194.1

>prot_F-serratus_M_contig101.194.1 ID=prot_F-serratus_M_contig101.194.1|Name=mRNA_F-serratus_M_contig101.194.1|organism=Fucus serratus male|type=polypeptide|length=202bp
MQPKTAINGPSTLRDSILPLEKLFRESFASVNDVLSFTSRGTKPASRASE
GNGESSTPATPVPEKGRMPQVRWGDSQTGRCTDSPAPCFLGPLSHSTKTA
AASPQENVESDDSGAATGGSNAALLGVSRGEGAEVGRGAIEEESRAVAPD
RSGATERGFGRGSELSAEVTGMLHQYSEMMLKVMQEKLEARIADGTLRRN
P*
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mRNA from alignment at F-serratus_M_contig101:211701..213445-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig101.194.1 ID=mRNA_F-serratus_M_contig101.194.1|Name=mRNA_F-serratus_M_contig101.194.1|organism=Fucus serratus male|type=mRNA|length=1745bp|location=Sequence derived from alignment at F-serratus_M_contig101:211701..213445- (Fucus serratus male)
GCACGCTCTCATCACTTCGATCCAACATCACCAGGTGGAGTTGGTTTGTG
GCAACAGGGAAATGCTGAGCTGGTGCGCTTACCTGTGCATTGTGTGGGGT
ATCACATATCATGGTTGCCGCGTTCGTATTTCCGGGACAACTCGTCGAGA
GTTAATGGATCCGGAGTTGGGACATTACCGCTCGTCAACCCAGAGTGTTG
TTCTCTTGTATGCTTGTCGTCCAGGAATCAGCGGGTGTGGACGCGTGAGG
GAGATTGCCCGAGAGACATTGACAGAAGGAGAACAAGCTGCAGCAGCATA
TGAACGGGGTGACGACGGGGAAGAAGGCCTATACGAAGACGATGAGTGGG
AACCCGGCGATAAGGAAACAAACGCCATGCAGCCGAAAACGGCAATAAAC
GGCCCGTCGACTCTCCGGGATAGCATTCTTCCCCTAGAAAAGTTATTCCG
CGAGAGCTTTGCGTCAGTCAATGACGTACTATCCTTCACCTCCAGGGGCA
CGAAGCCTGCCTCGAGGGCATCAGAGGGGAATGGCGAGAGCTCGACACCA
GCTACGCCTGTCCCCGAGAAAGGCAGAATGCCCCAGGTAAGATGGGGCGA
CTCGCAGACAGGGCGGTGCACGGATTCCCCGGCTCCTTGTTTCCTGGGCC
CCCTTTCCCACTCCACGAAAACCGCCGCGGCATCGCCGCAAGAAAATGTT
GAGAGCGACGATTCCGGAGCAGCAACGGGCGGGTCAAACGCGGCGTTGTT
GGGGGTGTCGAGAGGTGAAGGTGCTGAAGTAGGACGCGGGGCGATCGAGG
AGGAGAGCAGGGCTGTTGCCCCCGATCGCTCAGGGGCGACGGAGAGAGGC
TTCGGTCGTGGGTCGGAACTGTCGGCTGAGGTCACGGGCATGCTTCACCA
ATACTCCGAGATGATGCTGAAGGTGATGCAGGTGAGTCTGGATTCGTGTG
CATGCCCAGAATTCCCCAACACTCTACTGTGTATTAAAATAAAATCTTTC
TACGAGTGAGCCTCGCGATAAACGCCGTTTCCCGGCATGAGCAGCGTACC
AGCTAGAATCGATGCTGCTAGAGAAAGAATGCGCTTCGGTGAGACATTTC
GCCGCATTGTATCAACCAAGACTGGGTAATTGCCACCCAGACAAGTATTT
TCGAGCGAGTGCTGGGTTCATAGACTCGGGAAACACCTCCATCTTCTTGG
GAGATCAGGTTGCGAGGTTGACCACTGCGTGATGTTTGAAGCGCAGTTCG
CGCAACAATAAATACAAAAGCTGAAAGTGGTGAATCTTCTCCACGTAACG
GCAATTTGCACGACCAATCAGGAAAAATTGGAGGCCAGGATTGCGGACGG
GACACTTCGACGTAACCCCTGACGCTGGTCGGAAAAGGTTTCTGTCGCCC
ACTTGGCGGGCGGTGGGGTGTGGGTAGAAAGGGAAACCGCAAATCCGTAA
GCAACCCGCCCGGAGGAGAGCGATTCGCACGCATTGGGCGCTAAGCTCGG
GAAATGGAGGCAAAATTTGTTGTTATTTAAATCTTCCGCAGTAGATGACC
TCGTTTTTGGAACATGGGAGGGGATGGGGGAAAACATCCCCGGCTAATGT
CTGAAAGAATATGGCAGCCTACTTGGCGTACGAGGTTGACGTATTGAATA
TATAATGAACGATTATTGCCGGGTTTCAACTGGTTTTGGGTTGATCCCTA
AGGGAAGTTGAGAAAACGCAAGAATAAGAGATGGCCCGAAAAATC
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Coding sequence (CDS) from alignment at F-serratus_M_contig101:211701..213445-

>mRNA_F-serratus_M_contig101.194.1 ID=mRNA_F-serratus_M_contig101.194.1|Name=mRNA_F-serratus_M_contig101.194.1|organism=Fucus serratus male|type=CDS|length=1212bp|location=Sequence derived from alignment at F-serratus_M_contig101:211701..213445- (Fucus serratus male)
ATGCAGCCGAAAACGGCAATAAACGGCCCGTCGACTCTCCGGGATAGCAT
TCTTCCCCTAGAAAAGTTATTCCGCGAGAGCTTTGCGTCAGTCAATGACG
TACTATCCTTCACCTCCAGGGGCACGAAGCCTGCCTCGAGGGCATCAGAG
GGGAATGGCGAGAGCTCGACACCAGCTACGCCTGTCCCCGAGAAAGGCAG
AATGCCCCAGGTAAGATGGGGCGACTCGCAGACAGGGCGGTGCACGGATT
CCCCGGCTCCTTGTTTCCTGGGCCCCCTTTCCCACTCCACGAAAACCGCC
GCGGCATCGCCGCAAGAAAATGTTGAGAGCGACGATTCCGGAGCAGCAAC
GGGCGGGTCAAACGCGGCGTTGTTGGGGGTGTCGAGAGGTGAAGGTGCTG
AAGTAGGACGCGGGGCGATCGAGGAGGAGAGCAGGGCTGTTGCCCCCGAT
CGCTCAGGGGCGACGGAGAGAGGCTTCGGTCGTGGGTCGGAACTGTCGGC
TGAGGTCACGGGCATGCTTCACCAATACTCCGAGATGATGCTGAAGGTGA
TGCAGATGCAGCCGAAAACGGCAATAAACGGCCCGTCGACTCTCCGGGAT
AGCATTCTTCCCCTAGAAAAGTTATTCCGCGAGAGCTTTGCGTCAGTCAA
TGACGTACTATCCTTCACCTCCAGGGGCACGAAGCCTGCCTCGAGGGCAT
CAGAGGGGAATGGCGAGAGCTCGACACCAGCTACGCCTGTCCCCGAGAAA
GGCAGAATGCCCCAGGTAAGATGGGGCGACTCGCAGACAGGGCGGTGCAC
GGATTCCCCGGCTCCTTGTTTCCTGGGCCCCCTTTCCCACTCCACGAAAA
CCGCCGCGGCATCGCCGCAAGAAAATGTTGAGAGCGACGATTCCGGAGCA
GCAACGGGCGGGTCAAACGCGGCGTTGTTGGGGGTGTCGAGAGGTGAAGG
TGCTGAAGTAGGACGCGGGGCGATCGAGGAGGAGAGCAGGGCTGTTGCCC
CCGATCGCTCAGGGGCGACGGAGAGAGGCTTCGGTCGTGGGTCGGAACTG
TCGGCTGAGGTCACGGGCATGCTTCACCAATACTCCGAGATGATGCTGAA
GGTGATGCAGGAAAAATTGGAGGCCAGGATTGCGGACGGGACACTTCGAC
GTAACCCCTGAGAAAAATTGGAGGCCAGGATTGCGGACGGGACACTTCGA
CGTAACCCCTGA
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