mRNA_F-serratus_M_contig101.190.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig101.190.1 vs. uniprot
Match: A0A6H5L3T3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T3_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 9.040e-19 Identity = 84/214 (39.25%), Postives = 107/214 (50.00%), Query Frame = -1 Query: 1 RRHLQRGHHATPSFTAFQLMEQLFKCLATQEADS-CAPPQRPELTMPASPFPVDDGGKEEPDGETRKQRTPPVARVDGRGRMAGGRSDVIG------EGVDHAEERRRPRTRDRRMEDAEAETDAAVGVPDSAQEEGDSGKVFLSEPGDRGSSGGSSKELPARE-----EAARFPTEWAYRLAVTKLTAKLRAARERLREEKETARSAGERADQ 606 RRH+QRGHH+ PSFTAFQL+EQ+F CL T E+D+ +P +R + + A+ P+ D G ++ VA AG R V G D ++ P R R AA+G+ S GS +E +E ARF TEWAYRLAVTKLTA+L+AARERL EKE ARSAGER +Q Sbjct: 183 RRHVQRGHHSAPSFTAFQLIEQIFGCLKTLESDAQLSPARRRQRSPSAACSPLTDPSPPRRGGSPKRSPHAAVAAA-----AAGPRVTVKGLTPTPSSVSDRLDDEEDPDLRTGRG----TNLPAAIGIGXXXXXXXXXXXXXXXXVD---GSSGSQEEFQTQEGGGGRTTARFSTEWAYRLAVTKLTAQLKAARERLHGEKEAARSAGERVEQ 384
BLAST of mRNA_F-serratus_M_contig101.190.1 vs. uniprot
Match: D7FN22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN22_ECTSI) HSP 1 Score: 76.3 bits (186), Expect = 1.200e-12 Identity = 80/227 (35.24%), Postives = 96/227 (42.29%), Query Frame = -1 Query: 1 RRHLQRGHHATPSFTAFQLMEQLFKCLATQEADSCAPPQRPE--------LTMPASPFPVDDGGKEEPDGETRKQRTPPVARVDGRGRMAGGRSDVIGEGVDHAEERRRPRTRDRRMEDAEAETDAAVGVPDSAQEEGDSGKVFLSEPGDRGSSGGSSKELPAR-----------------EEAARFPTEWAYRLAVTKLTAKLRAARERLREEKETARSAGERADQ 606 RRH+QRG H+ PSFTAFQL+EQ+F CL T E+D+ P R + PA P P P +R+P VA R+ I GV R++D EA TD G S D ARF TEWAYRLAVTKLTA+L+A RERL EKE ARSAG+R +Q Sbjct: 209 RRHVQRGLHSAPSFTAFQLIEQIFGCLETLESDAQLSPARRRRQRSPSAACSPPADPSP--------PHRRGSPKRSPHVAAAAAGPRVTVKGLTPIPSGVSD------------RLDDEEA-TDLRTGRGRSLPAAIDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTTARFSTEWAYRLAVTKLTAQLKATRERLHGEKEAARSAGDRVEQ 414 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig101.190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig101.190.1 >prot_F-serratus_M_contig101.190.1 ID=prot_F-serratus_M_contig101.190.1|Name=mRNA_F-serratus_M_contig101.190.1|organism=Fucus serratus male|type=polypeptide|length=202bp LIRTLSRRAGRLLLFPQPFPRRPELRRQLGNRQPVRPLRRKSRRLFASWEback to top mRNA from alignment at F-serratus_M_contig101:45487..46092+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig101.190.1 ID=mRNA_F-serratus_M_contig101.190.1|Name=mRNA_F-serratus_M_contig101.190.1|organism=Fucus serratus male|type=mRNA|length=606bp|location=Sequence derived from alignment at F-serratus_M_contig101:45487..46092+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig101:45487..46092+ >mRNA_F-serratus_M_contig101.190.1 ID=mRNA_F-serratus_M_contig101.190.1|Name=mRNA_F-serratus_M_contig101.190.1|organism=Fucus serratus male|type=CDS|length=1212bp|location=Sequence derived from alignment at F-serratus_M_contig101:45487..46092+ (Fucus serratus male)back to top |