mRNA_F-serratus_M_contig101.190.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig101.190.1
Unique NamemRNA_F-serratus_M_contig101.190.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig101.190.1 vs. uniprot
Match: A0A6H5L3T3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T3_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 9.040e-19
Identity = 84/214 (39.25%), Postives = 107/214 (50.00%), Query Frame = -1 
Query:    1 RRHLQRGHHATPSFTAFQLMEQLFKCLATQEADS-CAPPQRPELTMPASPFPVDDGGKEEPDGETRKQRTPPVARVDGRGRMAGGRSDVIG------EGVDHAEERRRPRTRDRRMEDAEAETDAAVGVPDSAQEEGDSGKVFLSEPGDRGSSGGSSKELPARE-----EAARFPTEWAYRLAVTKLTAKLRAARERLREEKETARSAGERADQ 606
            RRH+QRGHH+ PSFTAFQL+EQ+F CL T E+D+  +P +R + +  A+  P+ D       G  ++     VA        AG R  V G         D  ++   P  R  R         AA+G+                       S GS +E   +E       ARF TEWAYRLAVTKLTA+L+AARERL  EKE ARSAGER +Q
Sbjct:  183 RRHVQRGHHSAPSFTAFQLIEQIFGCLKTLESDAQLSPARRRQRSPSAACSPLTDPSPPRRGGSPKRSPHAAVAAA-----AAGPRVTVKGLTPTPSSVSDRLDDEEDPDLRTGRG----TNLPAAIGIGXXXXXXXXXXXXXXXXVD---GSSGSQEEFQTQEGGGGRTTARFSTEWAYRLAVTKLTAQLKAARERLHGEKEAARSAGERVEQ 384
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BLAST of mRNA_F-serratus_M_contig101.190.1 vs. uniprot
Match: D7FN22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN22_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.200e-12
Identity = 80/227 (35.24%), Postives = 96/227 (42.29%), Query Frame = -1 
Query:    1 RRHLQRGHHATPSFTAFQLMEQLFKCLATQEADSCAPPQRPE--------LTMPASPFPVDDGGKEEPDGETRKQRTPPVARVDGRGRMAGGRSDVIGEGVDHAEERRRPRTRDRRMEDAEAETDAAVGVPDSAQEEGDSGKVFLSEPGDRGSSGGSSKELPAR-----------------EEAARFPTEWAYRLAVTKLTAKLRAARERLREEKETARSAGERADQ 606
            RRH+QRG H+ PSFTAFQL+EQ+F CL T E+D+   P R           + PA P P        P      +R+P VA      R+       I  GV              R++D EA TD   G   S     D                                             ARF TEWAYRLAVTKLTA+L+A RERL  EKE ARSAG+R +Q
Sbjct:  209 RRHVQRGLHSAPSFTAFQLIEQIFGCLETLESDAQLSPARRRRQRSPSAACSPPADPSP--------PHRRGSPKRSPHVAAAAAGPRVTVKGLTPIPSGVSD------------RLDDEEA-TDLRTGRGRSLPAAIDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTTARFSTEWAYRLAVTKLTAQLKATRERLHGEKEAARSAGDRVEQ 414
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig101.190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3T3_9PHAE9.040e-1939.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN22_ECTSI1.200e-1235.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig101contigF-serratus_M_contig101:45487..46092 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size607
Cds size606
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928804.3908236-CDS-F-serratus_M_contig101:45486..460921622928804.3908236-CDS-F-serratus_M_contig101:45486..46092Fucus serratus maleCDSF-serratus_M_contig101 45487..46092 +
1690962579.8929503-CDS-F-serratus_M_contig101:45486..460921690962579.8929503-CDS-F-serratus_M_contig101:45486..46092Fucus serratus maleCDSF-serratus_M_contig101 45487..46092 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig101.190.1prot_F-serratus_M_contig101.190.1Fucus serratus malepolypeptideF-serratus_M_contig101 45487..46092 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig101.190.1

>prot_F-serratus_M_contig101.190.1 ID=prot_F-serratus_M_contig101.190.1|Name=mRNA_F-serratus_M_contig101.190.1|organism=Fucus serratus male|type=polypeptide|length=202bp
LIRTLSRRAGRLLLFPQPFPRRPELRRQLGNRQPVRPLRRKSRRLFASWE
LLGASAATPTIPRFRQEDFSRVSLFLRTVGNSDSCIGLGLGIFHSSVARS
RASPLFRVVYTLADDVTPPSRHPSSAVNTRYWRRSLLPSFPVWFLLAAVV
HRKRRGWHGELGALRRRARVGLLSREAFEQLLHELEGGEGRRCVVSALEV
PP
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mRNA from alignment at F-serratus_M_contig101:45487..46092+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig101.190.1 ID=mRNA_F-serratus_M_contig101.190.1|Name=mRNA_F-serratus_M_contig101.190.1|organism=Fucus serratus male|type=mRNA|length=606bp|location=Sequence derived from alignment at F-serratus_M_contig101:45487..46092+ (Fucus serratus male)
CTGATCCGCACGCTCTCCCGCCGAGCGGGCCGTCTCCTTCTCTTCCCGCA
GCCGTTCCCGCGCCGCCCTGAGCTTCGCCGTCAGCTTGGTAACCGCCAGC
CGGTACGCCCACTCCGTCGGAAATCGCGCCGCCTCTTCGCGAGCTGGGAG
CTCCTTGGAGCTTCCGCCGCTACTCCCACGATCCCCAGGTTCAGACAAGA
AGACTTTTCCCGAGTCTCCCTCTTCCTGCGCACTGTCGGGAACTCCGACA
GCTGCATCGGTCTCGGCCTCGGCATCTTCCATTCTTCGGTCGCGCGTTCG
CGGGCGTCGCCTCTCTTCCGCGTGGTCTACACCCTCGCCGATGACGTCAC
TCCTCCCTCCCGCCATCCTTCCTCTGCCGTCAACACGCGCTACTGGAGGC
GTTCGTTGCTTCCGAGTTTCCCCGTCTGGTTCCTCCTTGCCGCCGTCGTC
CACCGGAAACGGCGAGGCTGGCATGGTGAGCTCGGGGCGTTGCGGAGGCG
CGCAAGAGTCGGCCTCCTGAGTCGCGAGGCATTTGAACAGCTGCTCCATG
AGCTGGAAGGCGGTGAAGGACGGCGTTGCGTGGTGTCCGCGCTGGAGGTG
CCTCCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig101:45487..46092+

>mRNA_F-serratus_M_contig101.190.1 ID=mRNA_F-serratus_M_contig101.190.1|Name=mRNA_F-serratus_M_contig101.190.1|organism=Fucus serratus male|type=CDS|length=1212bp|location=Sequence derived from alignment at F-serratus_M_contig101:45487..46092+ (Fucus serratus male)
CTGATCCGCACGCTCTCCCGCCGAGCGGGCCGTCTCCTTCTCTTCCCGCA
GCCGTTCCCGCGCCGCCCTGAGCTTCGCCGTCAGCTTGGTAACCGCCAGC
CGGTACGCCCACTCCGTCGGAAATCGCGCCGCCTCTTCGCGAGCTGGGAG
CTCCTTGGAGCTTCCGCCGCTACTCCCACGATCCCCAGGTTCAGACAAGA
AGACTTTTCCCGAGTCTCCCTCTTCCTGCGCACTGTCGGGAACTCCGACA
GCTGCATCGGTCTCGGCCTCGGCATCTTCCATTCTTCGGTCGCGCGTTCG
CGGGCGTCGCCTCTCTTCCGCGTGGTCTACACCCTCGCCGATGACGTCAC
TCCTCCCTCCCGCCATCCTTCCTCTGCCGTCAACACGCGCTACTGGAGGC
GTTCGTTGCTTCCGAGTTTCCCCGTCTGGTTCCTCCTTGCCGCCGTCGTC
CACCGGAAACGGCGAGGCTGGCATGGTGAGCTCGGGGCGTTGCGGAGGCG
CGCAAGAGTCGGCCTCCTGAGTCGCGAGGCATTTGAACAGCTGCTCCATG
AGCTGGAAGGCGGTGAAGGACGGCGTTGCGTGGTGTCCGCGCTGGAGGTG
CCTCCGCTGATCCGCACGCTCTCCCGCCGAGCGGGCCGTCTCCTTCTCTT
CCCGCAGCCGTTCCCGCGCCGCCCTGAGCTTCGCCGTCAGCTTGGTAACC
GCCAGCCGGTACGCCCACTCCGTCGGAAATCGCGCCGCCTCTTCGCGAGC
TGGGAGCTCCTTGGAGCTTCCGCCGCTACTCCCACGATCCCCAGGTTCAG
ACAAGAAGACTTTTCCCGAGTCTCCCTCTTCCTGCGCACTGTCGGGAACT
CCGACAGCTGCATCGGTCTCGGCCTCGGCATCTTCCATTCTTCGGTCGCG
CGTTCGCGGGCGTCGCCTCTCTTCCGCGTGGTCTACACCCTCGCCGATGA
CGTCACTCCTCCCTCCCGCCATCCTTCCTCTGCCGTCAACACGCGCTACT
GGAGGCGTTCGTTGCTTCCGAGTTTCCCCGTCTGGTTCCTCCTTGCCGCC
GTCGTCCACCGGAAACGGCGAGGCTGGCATGGTGAGCTCGGGGCGTTGCG
GAGGCGCGCAAGAGTCGGCCTCCTGAGTCGCGAGGCATTTGAACAGCTGC
TCCATGAGCTGGAAGGCGGTGAAGGACGGCGTTGCGTGGTGTCCGCGCTG
GAGGTGCCTCCG
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