mRNA_F-serratus_M_contig1009.188.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1009.188.1
Unique NamemRNA_F-serratus_M_contig1009.188.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1009.188.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 4.340e-26
Identity = 48/66 (72.73%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:  133 DRGCETRRQLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRLTDLLIEPMTFE 330
            D G + R QLPL LCW+ITMHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL DL++EPM+F+
Sbjct:    9 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFD 74
[Close]
BLAST of mRNA_F-serratus_M_contig1009.188.1 vs. uniprot
Match: A0A6H5KFN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN2_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.090e-25
Identity = 48/66 (72.73%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:  133 DRGCETRRQLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRLTDLLIEPMTFE 330
            D G + R QLPL LCW+ITMHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL DL++EPM+F+
Sbjct:    7 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFD 72
[Close]
BLAST of mRNA_F-serratus_M_contig1009.188.1 vs. uniprot
Match: A0A6H5KCP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP5_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 2.330e-25
Identity = 48/66 (72.73%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:  133 DRGCETRRQLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRLTDLLIEPMTFE 330
            D G + R QLPL LCW+ITMHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL DL++EPM+F+
Sbjct:    7 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFD 72
[Close]
BLAST of mRNA_F-serratus_M_contig1009.188.1 vs. uniprot
Match: A0A6H5JMH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH2_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 2.390e-25
Identity = 48/66 (72.73%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:  133 DRGCETRRQLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRLTDLLIEPMTFE 330
            D G + R QLPL LCW+ITMHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL DL++EPM+F+
Sbjct:   73 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFD 138
[Close]
BLAST of mRNA_F-serratus_M_contig1009.188.1 vs. uniprot
Match: A0A6H5K214_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K214_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 4.520e-25
Identity = 48/66 (72.73%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:  133 DRGCETRRQLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRLTDLLIEPMTFE 330
            D G + R QLPL LCW+ITMHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL DL++EPM+F+
Sbjct:    4 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVEPMSFD 69
[Close]
BLAST of mRNA_F-serratus_M_contig1009.188.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 4.570e-25
Identity = 50/73 (68.49%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:  112 PADAAAADRGCETRRQLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRLTDLLIEPMTFE 330
            P D    D G + R QLPL LCW+ITMHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL DL++EPM+F+
Sbjct:  173 PVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFD 245
[Close]
BLAST of mRNA_F-serratus_M_contig1009.188.1 vs. uniprot
Match: A0A6H5KN08_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN08_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 2.970e-24
Identity = 48/66 (72.73%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:  133 DRGCETRRQLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRLTDLLIEPMTFE 330
            D G + R QLPL LCW+ITMHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL DL++EPM+F+
Sbjct:    7 DGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFD 72
[Close]
BLAST of mRNA_F-serratus_M_contig1009.188.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 3.840e-24
Identity = 50/73 (68.49%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:  112 PADAAAADRGCETRRQLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRLTDLLIEPMTFE 330
            P D    D G + R QLPL LCW+ITMHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL DL++EPM+F+
Sbjct:  347 PVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFD 419
[Close]
BLAST of mRNA_F-serratus_M_contig1009.188.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 4.320e-24
Identity = 50/73 (68.49%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:  112 PADAAAADRGCETRRQLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRLTDLLIEPMTFE 330
            P D    D G + R QLPL LCW+ITMHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL DL++EPM+F+
Sbjct:   64 PVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFD 136
[Close]
BLAST of mRNA_F-serratus_M_contig1009.188.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 7.200e-24
Identity = 50/73 (68.49%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:  112 PADAAAADRGCETRRQLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRLTDLLIEPMTFE 330
            P D    D G + R QLPL LCW+ITMHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL DL++EPM+F+
Sbjct: 1478 PVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFD 1550
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1009.188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSF1_9PHAE4.340e-2672.73Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFN2_9PHAE1.090e-2572.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCP5_9PHAE2.330e-2572.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMH2_9PHAE2.390e-2572.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K214_9PHAE4.520e-2572.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUS2_9PHAE4.570e-2568.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN08_9PHAE2.970e-2472.73Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JFG8_9PHAE3.840e-2468.49Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K4U7_9PHAE4.320e-2468.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L976_9PHAE7.200e-2468.49ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1009contigF-serratus_M_contig1009:275895..276561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score77.0
Seed ortholog evalue6e-12
Seed eggNOG ortholog588596.U9U7T2
Hectar predicted targeting categoryother localisation
EggNOG OGs2D017@1,2SCDQ@2759,3AE97@33154
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons2
Model size332
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928804.197543-CDS-F-serratus_M_contig1009:275894..2760061622928804.197543-CDS-F-serratus_M_contig1009:275894..276006Fucus serratus maleCDSF-serratus_M_contig1009 275895..276006 +
1690962579.803227-CDS-F-serratus_M_contig1009:275894..2760061690962579.803227-CDS-F-serratus_M_contig1009:275894..276006Fucus serratus maleCDSF-serratus_M_contig1009 275895..276006 +
1622928804.2078362-CDS-F-serratus_M_contig1009:276343..2765611622928804.2078362-CDS-F-serratus_M_contig1009:276343..276561Fucus serratus maleCDSF-serratus_M_contig1009 276344..276561 +
1690962579.8133166-CDS-F-serratus_M_contig1009:276343..2765611690962579.8133166-CDS-F-serratus_M_contig1009:276343..276561Fucus serratus maleCDSF-serratus_M_contig1009 276344..276561 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1009.188.1prot_F-serratus_M_contig1009.188.1Fucus serratus malepolypeptideF-serratus_M_contig1009 275895..276561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1009.188.1

>prot_F-serratus_M_contig1009.188.1 ID=prot_F-serratus_M_contig1009.188.1|Name=mRNA_F-serratus_M_contig1009.188.1|organism=Fucus serratus male|type=polypeptide|length=110bp
DAHELRTRRAREHQQANANAAAEATIQGQHEETSRRPPADAAAADRGCET
RRQLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRLT
DLLIEPMTFE
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mRNA from alignment at F-serratus_M_contig1009:275895..276561+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1009.188.1 ID=mRNA_F-serratus_M_contig1009.188.1|Name=mRNA_F-serratus_M_contig1009.188.1|organism=Fucus serratus male|type=mRNA|length=667bp|location=Sequence derived from alignment at F-serratus_M_contig1009:275895..276561+ (Fucus serratus male)
GATGCTCACGAATTACGTACACGGCGAGCTCGGGAACACCAGCAGGCAAA
CGCAAATGCAGCGGCGGAAGCTACTATACAGGGTCAGCATGAAGAAACGA
GCCGACGACCTCGTAAGCGCTGTTTGAATTTTCGAAAATAAAAACTGTGT
TTCAAACAGTCTGAACTTTATGTTATCGAGACAACTGCTGTGTACTTAAA
CTCATATACCGCAATTTGTGGCTTTTGTTCTACACTGTTGTAGGCTCTCC
ATGAAGAAACGACCCGACGGCCTGGTAATCACAGAGGTGTCGTACGATGT
ACTAAATTGTTGAATAGGGGCATTAGACCTCTGTCTCTTCTCCGACCGGT
TTTTCCTCATCACACAGCCCGCTGGAAATATTCCCAAATTAATACGTCGC
TCGCCCTCTCTGCTATGTACCTATACGGCTTTGCACTTCCGTTGCACAGC
CGCCGATGCTGCTGCTGCCGATAGAGGATGCGAGACACGTCGCCAATTAC
CCCTGGCTCTTTGTTGGTCTATAACAATGCACAAGAGCCAAGGGCAGACG
TTGGACAAGGCCGTTGTCGACCTCGGACGGTCAGAGGCTACAGCGGGATT
GACGTTCGTGTGTCTTAGCCGCGCAAAGCGCCTAACGGATCTTTTAATAG
AGCCCATGACATTCGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1009:275895..276561+

>mRNA_F-serratus_M_contig1009.188.1 ID=mRNA_F-serratus_M_contig1009.188.1|Name=mRNA_F-serratus_M_contig1009.188.1|organism=Fucus serratus male|type=CDS|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig1009:275895..276561+ (Fucus serratus male)
GATGCTCACGAATTACGTACACGGCGAGCTCGGGAACACCAGCAGGCAAA
CGCAAATGCAGCGGCGGAAGCTACTATACAGGGTCAGCATGAAGAAACGA
GCCGACGACCTCGATGCTCACGAATTACGTACACGGCGAGCTCGGGAACA
CCAGCAGGCAAACGCAAATGCAGCGGCGGAAGCTACTATACAGGGTCAGC
ATGAAGAAACGAGCCGACGACCTCCCGCCGATGCTGCTGCTGCCGATAGA
GGATGCGAGACACGTCGCCAATTACCCCTGGCTCTTTGTTGGTCTATAAC
AATGCACAAGAGCCAAGGGCAGACGTTGGACAAGGCCGTTGTCGACCTCG
GACGGTCAGAGGCTACAGCGGGATTGACGTTCGTGTGTCTTAGCCGCGCA
AAGCGCCTAACGGATCTTTTAATAGAGCCCATGACATTCGAGCCGCCGAT
GCTGCTGCTGCCGATAGAGGATGCGAGACACGTCGCCAATTACCCCTGGC
TCTTTGTTGGTCTATAACAATGCACAAGAGCCAAGGGCAGACGTTGGACA
AGGCCGTTGTCGACCTCGGACGGTCAGAGGCTACAGCGGGATTGACGTTC
GTGTGTCTTAGCCGCGCAAAGCGCCTAACGGATCTTTTAATAGAGCCCAT
GACATTCGAG
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