mRNA_F-serratus_M_contig1009.184.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1009.184.1
Unique NamemRNA_F-serratus_M_contig1009.184.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1009.184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1009contigF-serratus_M_contig1009:94560..95409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size447
Cds size444
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1009.184.1prot_F-serratus_M_contig1009.184.1Fucus serratus malepolypeptideF-serratus_M_contig1009 94560..95407 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928803.570231-CDS-F-serratus_M_contig1009:94559..946181622928803.570231-CDS-F-serratus_M_contig1009:94559..94618Fucus serratus maleCDSF-serratus_M_contig1009 94560..94618 +
1690962579.6153305-CDS-F-serratus_M_contig1009:94559..946181690962579.6153305-CDS-F-serratus_M_contig1009:94559..94618Fucus serratus maleCDSF-serratus_M_contig1009 94560..94618 +
1622928803.5825539-CDS-F-serratus_M_contig1009:94774..949871622928803.5825539-CDS-F-serratus_M_contig1009:94774..94987Fucus serratus maleCDSF-serratus_M_contig1009 94775..94987 +
1690962579.6254213-CDS-F-serratus_M_contig1009:94774..949871690962579.6254213-CDS-F-serratus_M_contig1009:94774..94987Fucus serratus maleCDSF-serratus_M_contig1009 94775..94987 +
1622928803.5948448-CDS-F-serratus_M_contig1009:95235..954071622928803.5948448-CDS-F-serratus_M_contig1009:95235..95407Fucus serratus maleCDSF-serratus_M_contig1009 95236..95407 +
1690962579.64286-CDS-F-serratus_M_contig1009:95235..954071690962579.64286-CDS-F-serratus_M_contig1009:95235..95407Fucus serratus maleCDSF-serratus_M_contig1009 95236..95407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1009.184.1

>prot_F-serratus_M_contig1009.184.1 ID=prot_F-serratus_M_contig1009.184.1|Name=mRNA_F-serratus_M_contig1009.184.1|organism=Fucus serratus male|type=polypeptide|length=148bp
GKGKGNTRDNNRAGHDNGAGYKFAPWHPNVLRALPRDLVDMMPALILHHS
AVDKRLLVRLEQTVCQKTGTATLAANLEESHKMYFWNMTTRYYFRVSRGR
HDQQPLSDVQRAKLNSPPQIGGFHDTDGFNGRPPGRAVLLAAWFTYFE
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mRNA from alignment at F-serratus_M_contig1009:94560..95409+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1009.184.1 ID=mRNA_F-serratus_M_contig1009.184.1|Name=mRNA_F-serratus_M_contig1009.184.1|organism=Fucus serratus male|type=mRNA|length=850bp|location=Sequence derived from alignment at F-serratus_M_contig1009:94560..95409+ (Fucus serratus male)
GGGAAAGGGAAAGGGAACACTAGAGACAACAACAGAGCTGGACACGACAA
TGGCGCAGGGTATGTTCCCTCCCTTCTCTCATTACGAGGCTTGTATGTTC
CATGTTGTGTCGTTTGTGTTGAGCATGCTGTTGTTCTATGTTCAGCAACA
TTGCAGTCTTTACTCGGAGGTCGCTTTTACCGTTGTTGCCGCTGACATGT
GTGTGGCGTCAATAGGTACAAGTTCGCTCCATGGCACCCGAATGTTCTCC
GAGCGCTTCCGCGCGACTTGGTAGATATGATGCCTGCGCTGATACTACAC
CATTCCGCTGTGGACAAGCGACTCCTTGTCCGCCTCGAGCAGACTGTGTG
TCAGAAAACGGGGACAGCAACCCTTGCGGCCAACCTGGAGGAGAGCCACA
AAATGTACTTCTGGAATATGACAACGCGGTGAGCAAAGGTTTCGCCGCGC
CAGGTTTCAAAAGGCCCACAGAAGGAAATTTTATTTCTGAGGGGTTGATT
CGCGACGATTTCGCCAGACGGGATGTTTCACCGACAAAAGCTTGCCCTGA
ATTTATCGCATTTAACCAGGGGTTGGTCAAAAGGCTATTTTCTGTTTCTT
CCCAAAACGGGGACAAAAATGTTACATCCCCCTGCCCCCAATCGTTGAAC
TGGTCTTCTCGCTGTTCACGGTCCAGGTACTACTTCCGTGTTAGTCGTGG
ACGCCATGACCAGCAGCCCCTCAGCGATGTGCAGCGGGCTAAACTGAATA
GCCCTCCTCAAATCGGCGGATTTCACGACACGGACGGCTTCAACGGTAGG
CCGCCCGGGCGGGCTGTACTGTTGGCAGCTTGGTTCACCTATTTCGAGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1009:94560..95409+

>mRNA_F-serratus_M_contig1009.184.1 ID=mRNA_F-serratus_M_contig1009.184.1|Name=mRNA_F-serratus_M_contig1009.184.1|organism=Fucus serratus male|type=CDS|length=888bp|location=Sequence derived from alignment at F-serratus_M_contig1009:94560..95409+ (Fucus serratus male)
GGGAAAGGGAAAGGGAACACTAGAGACAACAACAGAGCTGGACACGACAA
TGGCGCAGGGGGAAAGGGAAAGGGAACACTAGAGACAACAACAGAGCTGG
ACACGACAATGGCGCAGGGTACAAGTTCGCTCCATGGCACCCGAATGTTC
TCCGAGCGCTTCCGCGCGACTTGGTAGATATGATGCCTGCGCTGATACTA
CACCATTCCGCTGTGGACAAGCGACTCCTTGTCCGCCTCGAGCAGACTGT
GTGTCAGAAAACGGGGACAGCAACCCTTGCGGCCAACCTGGAGGAGAGCC
ACAAAATGTACTTCTGGAATATGACAACGCGGTACAAGTTCGCTCCATGG
CACCCGAATGTTCTCCGAGCGCTTCCGCGCGACTTGGTAGATATGATGCC
TGCGCTGATACTACACCATTCCGCTGTGGACAAGCGACTCCTTGTCCGCC
TCGAGCAGACTGTGTGTCAGAAAACGGGGACAGCAACCCTTGCGGCCAAC
CTGGAGGAGAGCCACAAAATGTACTTCTGGAATATGACAACGCGGTACTA
CTTCCGTGTTAGTCGTGGACGCCATGACCAGCAGCCCCTCAGCGATGTGC
AGCGGGCTAAACTGAATAGCCCTCCTCAAATCGGCGGATTTCACGACACG
GACGGCTTCAACGGTAGGCCGCCCGGGCGGGCTGTACTGTTGGCAGCTTG
GTTCACCTATTTCGAGGTACTACTTCCGTGTTAGTCGTGGACGCCATGAC
CAGCAGCCCCTCAGCGATGTGCAGCGGGCTAAACTGAATAGCCCTCCTCA
AATCGGCGGATTTCACGACACGGACGGCTTCAACGGTAGGCCGCCCGGGC
GGGCTGTACTGTTGGCAGCTTGGTTCACCTATTTCGAG
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