mRNA_F-serratus_M_contig1008.174.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1008.174.1 vs. uniprot
Match: D7FKD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD5_ECTSI) HSP 1 Score: 586 bits (1511), Expect = 5.850e-190 Identity = 395/946 (41.75%), Postives = 532/946 (56.24%), Query Frame = 2
Query: 50 QGTRVDCLFDDDYFRGTVDATTIDGEKRDLFRVRFDDGDVRDDVPEEDMELPLEPGIRVQCLFEDDEAYFDGVIGRDNGDATYLVTFDDGDVLVAAPRRDIQIVSPPTNHKVNSAKGDADQAKDVHGYTGNLEDACCEREDHMKEGPDGNAVNSVDSTAEDVNSRQYWAHERGDMEYSKPKTGPVD-SHLKQTVPDRQHQDAGNAQNAERETSCAPDCSGGRSSESNNGTTTGVAERTSGDDSGGGARHFCSGRQKRFNQ--ERSPAFIPATHNPVHAYIEALAAATPRLMEDAPPDFRLWAVSYQMVALEDQLREQASAKGETWNDSILFVEGVMGGSNTLSSGRKFHPRRYDNEPGGYAGGR--TRGTTLKEGAVASSFPANLELRKMVENLSTLRIRQASRHERTMALVRLCYGDSSLDMVQALCDLAEGYAKEGLWPQVSNHMTRVADILAGLHGPEKFDDGGAFGTREGGWRNLDSTCGDTNLYNLQAEE--AFYPS---LRPVCWPEPYRYTNPALCSSLRSAGCARLILQVLKLIRTAANITFFGPRYALKVVRVNLEALLLAHPDETLRSAGPGIFGN-DLPTACGWGVVVDVLRERSRLFVDLNLKARSVFEGVMPKHAGAFRIAFRRVDPEGLGIANAQVVALMALAEDPHTNVENLQTRGNPGRHSLLGNRIRLLTGRSQAHTNSLPGAYSNLSTALCELKRWAHHEEIGRFWGVTPSDHHGPPLLDKVPSSTSAFQQKSKIKAKKLAKDWAQGDEGQDVFKEECRRLLQECRGRTEVIFREEVELKTWQTLVANRAQTIARELEGQGRDLEFAEKHLLRAWEILESRYGRYHTDGGAACVSLGNLAITRNRQDEAENWFRRALETFERCFAGERPPVSASIEATLGKLLVGQGQQMERDGERSPDKEASRRRLLLEATRLIEKAAAFYSERVET 2854
+GTRVDCLF D+YFRG VD T G +RV FDDGD+R+D P ED+ELPLE G RV+C+FE ++ YFDGVI DNGDATY V FDDGDVL AAPR DI+++S +H+ SA A A+D + E + + + + + ++ +D NS+ A G++ PV+ +H P R + G+ R S SS + G+++G +R +G R S R + + + S ++P + NP+HA++EALAAA PRL+ +APPDFRL A+S+++ LE+QLR+Q A+GE W+ + E + ++ GR R D E +GG R TT + GA A SFPA+ ELR++ E+LSTLR++Q +ALVRLCYGD+SL+MVQA+ DLA+GYAKE LWPQVSNHM R ADILA G +G GG +D L+ +E YP R + +P RY++PALC SL A ARL+L++LK +R ++ G R +V R N EA L H D+ LRSA + +P+ CGWG + LR S LF DLNLK + EGV K A R+AF+ VDP+G G A ++++ALM ++ T VE SLL R++ LTGR + HTN L A NLS AL EL+R +G G P + L D + + Q+ S IKAKKLA+ W QG EGQD++K+EC+RL+ ECR R EV+ R E+E +TWQ LVA R++ + REL G+G++L+ AE +L+R WEILESR+GR D GAACVSLG+LA+ R R +EA +WFRRAL TFE L EAT L+EKAA FYSERV T
Sbjct: 11 KGTRVDCLFGDEYFRGKVDDTDGSGSS---YRVIFDDGDIREDAPPEDLELPLEQGCRVECMFEGEDGYFDGVISIDNGDATYKVDFDDGDVLDAAPRHDIRVLS--WSHE-ESAPSKAVTAEDNNTNVAEQEGTGFDTRYSDRSHNEAESEGNREAQKDDENSKVISAA-HGELP-------PVEETHDSPRQPQRFSEVDGSEDGYGRAGDEPAGTSQHGSSPRHLGSSSGEPQRIHDSWTGRELRGTLSNRNEPTTELVQASSLYVPTSPNPLHAHLEALAAAAPRLLAEAPPDFRLSAISHRIAVLEEQLRQQ-EARGEAWHLPVFSAETPLHPADPSLRGRLERQGRSDPEQATGSGGEGSPRATTARGGAAAPSFPAHAELRQVAEDLSTLRMKQ-------IALVRLCYGDASLEMVQAIADLADGYAKEDLWPQVSNHMARAADILARDKGSRVPGNGFFITATPGGGTYVDPRLRFKGHSGLRGDEPRGGYPEGQRARGLAFPTENRYSDPALCRSLTQARSARLLLELLKGLRL--SVVEGGERG--QVERENFEAFLSTHKDKALRSARHRLLLEAQMPSNCGWGAALGCLRRNSPLFADLNLK---IMEGVQQKQAAKVRLAFQAVDPDGTGCAESEILALMVADDEEETAVEGRVGVAWQRLRSLLHVRVQTLTGRCETHTNRLAAASRNLSEALAELERLG----LGEASGSVPVLNA---LTDALALTHRRHQEMSSIKAKKLAETWIQGKEGQDLWKQECKRLVLECRRRLEVVPRAEIEERTWQALVAYRSKILTRELGGKGKELDTAEDYLVRVWEILESRHGRNDPDVGAACVSLGSLAVIRRRLNEAIDWFRRALGTFE---------------------------------------------ALEEATGLMEKAATFYSERVTT 875
BLAST of mRNA_F-serratus_M_contig1008.174.1 vs. uniprot
Match: A0A6H5JCV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV6_9PHAE) HSP 1 Score: 254 bits (648), Expect = 1.190e-67 Identity = 199/536 (37.13%), Postives = 268/536 (50.00%), Query Frame = 2
Query: 50 QGTRVDCLFDDDYFRGTVDATTIDGEKRDLFRVRFDDGDVRDDVPEEDMELPLEPGIRVQCLFEDDEAYFDGVIGRDNGDATYLVTFDDGDVLVAAPRRDIQIVSPPTNHKV-NSAKGDADQAKDVHGYTGNLEDACCEREDHMKEGPDGN--AVNSVDST---------------AEDVNSRQYWAHERGDMEYSKPKTGPVDSHLKQTVPDR------------------QHQDAGNAQNAERETSCAPD-CSGGRSSESNNGTTTGVAERTSGDDSGGGARHF--CSGRQ---KRFNQERSPA--------FIPATHNPVHAYIEALAAATPRLMEDAPPDFRLWAVSYQMVALEDQLREQAS-----------AKGETWNDSILFVEGVMGGSNTLSSGR-----KFHPRRYDNEPGGYAG-GRTRGTTLKEGAVASSFPANLELRKMVENLSTLRIRQASRHERT---------------------------MALVRLCYGDSSLDMVQALCDLAEGYAKEGLWPQVSNHM 1375
+GTRVDCLF D+YFRG VD T G +RV FDDGD+R+D P ED+E+PLE G RV+C+FE ++ YFDGVI DNGDATY V FDDGDVL AAPR DI+++S P V +A D +V G D H + +GN A + D++ D R E G E +TG + Q + D G AQ R+ D CS R E+ + T +G E G SG R+ C+GR N++ A ++P + NP+HA++EALAAA P L+ +APPDFRL A S+++ ALE+QLR+Q A+GE W+ + + + ++ GR + P + E G G G +R T + GA A SFPA+ ELR++VE+LSTLR++QA + +ALVRLCYGD+SL+MVQA+ DLA+GYAKE LWPQ SN +
Sbjct: 11 KGTRVDCLFGDEYFRGKVDDTDGGGSS---YRVIFDDGDIREDAPPEDLEIPLEQGCRVECMFEGEDGYFDGVISTDNGDATYKVDFDDGDVLDAAPRHDIRVLSWPHEESVPTNAVTAEDNYTNVTEQEGKALDTGYSNRSHNEAESEGNREAQKNDDNSKGISAAHGELPPREETHDPPHRPQRFSEVGGSEDGYGRTGDEPAGTSQHXXXXXXXXXXXXXXXXXXXXSVNYGDNGIAQET-RDCDFGHDICS--RVKETRSSTRSG--EEDPGSSSGEPQRNHDSCTGRNLWGTPSNRDEPTAELVQAPSLYVPTSPNPLHAHLEALAAAAPHLLAEAPPDFRLSATSHRIAALEEQLRQQVGGVLWPCGKGGEARGEAWHLPVFSAKTPLHPADPSLCGRPERQGRSIPEQVSAEATGSGGEGSSRATKARGGAAAPSFPAHTELRQVVEDLSTLRMKQARSAQLAPVKLMAARETVAAAIMMSRSVFSYIAQIALVRLCYGDASLEMVQAIADLADGYAKEDLWPQASNSV 538
BLAST of mRNA_F-serratus_M_contig1008.174.1 vs. uniprot
Match: A0A6H5J7A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7A2_9PHAE) HSP 1 Score: 113 bits (283), Expect = 8.240e-26 Identity = 53/86 (61.63%), Postives = 69/86 (80.23%), Query Frame = 2
Query: 2396 EVELKTWQTLVANRAQTIARELEGQGRDLEFAEKHLLRAWEILESRYGRYHTDGGAACVSLGNLAITRNRQDEAENWFRRALETFE 2653
++E +TWQ LVA R++ + REL G+G++L+ AE +L+RAWEILESR GR D GAAC+SLGNLA+ R R +EA +WFRRALETFE
Sbjct: 20 QIEERTWQALVAYRSKVLTRELGGKGKELDTAEDYLVRAWEILESRQGRNDPDVGAACISLGNLAVIRRRLNEAIDWFRRALETFE 105 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1008.174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1008.174.1 >prot_F-serratus_M_contig1008.174.1 ID=prot_F-serratus_M_contig1008.174.1|Name=mRNA_F-serratus_M_contig1008.174.1|organism=Fucus serratus male|type=polypeptide|length=1119bp MSRNPFVQGTRVDCLFDDDYFRGTVDATTIDGEKRDLFRVRFDDGDVRDDback to top mRNA from alignment at F-serratus_M_contig1008:77528..96559- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1008.174.1 ID=mRNA_F-serratus_M_contig1008.174.1|Name=mRNA_F-serratus_M_contig1008.174.1|organism=Fucus serratus male|type=mRNA|length=19032bp|location=Sequence derived from alignment at F-serratus_M_contig1008:77528..96559- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1008:77528..96559- >mRNA_F-serratus_M_contig1008.174.1 ID=mRNA_F-serratus_M_contig1008.174.1|Name=mRNA_F-serratus_M_contig1008.174.1|organism=Fucus serratus male|type=CDS|length=6714bp|location=Sequence derived from alignment at F-serratus_M_contig1008:77528..96559- (Fucus serratus male)back to top |