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Homology
BLAST of mRNA_F-serratus_M_contig1005.163.1 vs. uniprot
Match: D7FTH4_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTH4_ECTSI) HSP 1 Score: 120 bits (300), Expect = 7.120e-26 Identity = 64/125 (51.20%), Postives = 80/125 (64.00%), Query Frame = 1
Query: 28 LSESETPELRLLPGAYTGDQNVFIGGSADSDYPSHARNVNLIGWNST---------GVGNGTAVLSCQGRDRQQSRVSDVTGLAAAVAEGSKASRGIWLSEGRITRLANLTVTECPGGGVGVELW 375
++E PELRLLPG YTG++NVFIGG D +YPS ARNV+++GW ++ + AV+SCQGR SD + A+RGIWLSEGRIT LANLTVT+CP GGVGV+ W
Sbjct: 1 MAEGSRPELRLLPGLYTGNRNVFIGGIGDKEYPSAARNVSIVGWGASPHVAEEPAHAYASTAAVISCQGRK------SD--------GDSHPATRGIWLSEGRITSLANLTVTDCPAGGVGVDAW 111
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | mitochondrion |
Exons | 4 |
Model size | 1099 |
Cds size | 675 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928796.6394217-UTR-F-serratus_M_contig1005:291466..291505 | 1622928796.6394217-UTR-F-serratus_M_contig1005:291466..291505 | Fucus serratus male | UTR | F-serratus_M_contig1005 291467..291505 - |
1690962576.071018-UTR-F-serratus_M_contig1005:291466..291505 | 1690962576.071018-UTR-F-serratus_M_contig1005:291466..291505 | Fucus serratus male | UTR | F-serratus_M_contig1005 291467..291505 - |
1622928796.6502614-UTR-F-serratus_M_contig1005:292495..292539 | 1622928796.6502614-UTR-F-serratus_M_contig1005:292495..292539 | Fucus serratus male | UTR | F-serratus_M_contig1005 292496..292539 - |
1690962576.0837736-UTR-F-serratus_M_contig1005:292495..292539 | 1690962576.0837736-UTR-F-serratus_M_contig1005:292495..292539 | Fucus serratus male | UTR | F-serratus_M_contig1005 292496..292539 - |
1622928796.6781123-UTR-F-serratus_M_contig1005:293214..293215 | 1622928796.6781123-UTR-F-serratus_M_contig1005:293214..293215 | Fucus serratus male | UTR | F-serratus_M_contig1005 293215..293215 - |
1690962576.1009605-UTR-F-serratus_M_contig1005:293214..293215 | 1690962576.1009605-UTR-F-serratus_M_contig1005:293214..293215 | Fucus serratus male | UTR | F-serratus_M_contig1005 293215..293215 - |
1622928796.699779-UTR-F-serratus_M_contig1005:294170..294373 | 1622928796.699779-UTR-F-serratus_M_contig1005:294170..294373 | Fucus serratus male | UTR | F-serratus_M_contig1005 294171..294373 - |
1690962576.1098685-UTR-F-serratus_M_contig1005:294170..294373 | 1690962576.1098685-UTR-F-serratus_M_contig1005:294170..294373 | Fucus serratus male | UTR | F-serratus_M_contig1005 294171..294373 - |
1622928796.717243-UTR-F-serratus_M_contig1005:295771..295908 | 1622928796.717243-UTR-F-serratus_M_contig1005:295771..295908 | Fucus serratus male | UTR | F-serratus_M_contig1005 295772..295908 - |
1690962576.1220286-UTR-F-serratus_M_contig1005:295771..295908 | 1690962576.1220286-UTR-F-serratus_M_contig1005:295771..295908 | Fucus serratus male | UTR | F-serratus_M_contig1005 295772..295908 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928796.6628537-CDS-F-serratus_M_contig1005:292539..293214 | 1622928796.6628537-CDS-F-serratus_M_contig1005:292539..293214 | Fucus serratus male | CDS | F-serratus_M_contig1005 292540..293214 - |
1690962576.0922894-CDS-F-serratus_M_contig1005:292539..293214 | 1690962576.0922894-CDS-F-serratus_M_contig1005:292539..293214 | Fucus serratus male | CDS | F-serratus_M_contig1005 292540..293214 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1005.163.1 >prot_F-serratus_M_contig1005.163.1 ID=prot_F-serratus_M_contig1005.163.1|Name=mRNA_F-serratus_M_contig1005.163.1|organism=Fucus serratus male|type=polypeptide|length=225bp
MPRWWRGRRALAPGNSSTTRSAPPSPSLSYVTLVGNGANDCDMGGGLYVT FAAATADGARKGIGEAEFGEGTGGGDDNAGSSGAAATTVAVAVAPTMMAS PDTAMVTVTGCLVSNNSARLGGGIAVEGTLPSSPPSLSPVDTSLLRPGTP GRDDRQEAVTQRVEERRALGSLQRVRSSGFRVHWRRWAESLSKGTRWLRE TRRPRAGASGRQVHGFPLSAEAWW* back to topmRNA from alignment at F-serratus_M_contig1005:291467..295908- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig1005.163.1 ID=mRNA_F-serratus_M_contig1005.163.1|Name=mRNA_F-serratus_M_contig1005.163.1|organism=Fucus serratus male|type=mRNA|length=4442bp|location=Sequence derived from alignment at F-serratus_M_contig1005:291467..295908- (Fucus serratus male) AGCGCACTGCTGGCGATCCCCGCCAATCTATCGGAGAGCGAGACGCCGGA
ACTGCGGCTTCTTCCGGGCGCTTACACCGGCGACCAAAACGTTTTCATCG
GAGGGTCCGCCGACAGCGACTACCCTTCCCACGCGAGGTACAGGGTATAG
TACACTTTTTAGGGTACACCTTATATTAGTAGGTGACAGGACCGCCGTGT
CCCCGTCGATTTCCTTGTAGTTAGCATTTAGCTGACGGGTTTTACCAGCA
GGATGGGCAATTTCAGGGCACGTTTGGCGAAAATGTCGACGTCATCTCCA
AACTGCATGATTACAGTTCATAGTTCGTATTCGTATACGCTAAGCTTTCT
CCGTATTCGAGTATTTTTTTCTTCTTCTTTTCTTTCTTTGATCTCACTTA
TTAATAGTATAGCCGATGGGCCTCATCATTGCCATCCTGCCTGTGGTCAC
AAAGGATCTTCCCATCTCTCCCCGGTTCACGCCTTACAATTTTTTTATCG
CGATGCAATGTCGTTCAGCAATCTTACAACTCATCAACCAATGGTTGAAT
TTTACTTACTCCTACTTTGGAGAACACAAATCCTACTTTGGTGAAAATCG
AACTCAAGACTTCCGCACTAGCAGGTGTGCAGGTTACCTACCAGACCACT
CGGGCGACGAGGTACTACTGCACACTTGATTGATTAGTTTTCTTCTTAAT
ACAGATGTATGTAGCAGCAGTATTTCGTGTTGTTTTCCATGTTGGCGCCC
GGGGCGGATCGAGTTCCCATGGTGCTGACTGTACGCGATCCCCTGTAGAA
ATATACCCTTCCACTGTGAAAACCCGAACCCGTTTTTTCTCCCGTTTCCG
TATAGTGTACCAAGTGTTATTACTATAGTGTATTTCACAGAACAGTATGT
ATCTATTATCATACAGAGATGTATGCATTATATATATATATATATATGTA
CGTATGTGCAGCTCTCACGATGTAGGTACCTTATGCAGTACACCATGTAC
ACCGTAGTGTTCGGAGCGAACGCCTCCCTCGGGGAAAGAACCCCCCCCCC
CACACCCCCACTTTTATCTTGATTACAAGGCAGAATGCCGCTCAAAATAT
TTGTTGAAATAGCCCTTAGCAAGACCTTTCGAATGCCGCGTTGTTCGATG
GGAGGTCTCTGGCTCAGTCGGTCAAGAGAAAAATTTGGAGGGTGGGAGAT
TTTTTTTTCCGGGGGGGGGCGAGTCCTCTCCGAACACGAGGGCAAATCCT
ATTGCTTTACAGTATATTATTCTCGCCGTTCACAAAAATTCCGCACGTTC
TAGAGTTTTGTTTTTTTTCGTGGGGATGTTTGTGTTCTGTTTTTTCGTTA
AGTCCCACACCACGCGCGATCGCAAAGTGTAGGTGTGGCTTTTTTTTGGT
TTCCCCTGGATTTTTCTTGAAATTCTCGCCGCCAGCAAAAAAAAAAAAAA
AAAAGTGTTACCACCCAGCCCCGCTCCCCTTCTGTTTCCCTTCTTTTTGT
TTTCGCTTCGCTGTCTTCCGCGACGGTTTCAATAGGAACGTCAACCTCAT
CGGATGGAACTCCACCGGCGTCGGCAATGGAACCGCGGTGCTTTCTTGCC
AGGGAAGGGATCGTCAACAGTCCCGCGTCAGTGACGTCACGGGATTGGCT
GCGGCCGTGGCGGAGGGATCGAAGGCCTCTCGAGGGATCTGGTTGAGCGA
GGGTCGAATCACGCGTCTGGCAAATTTGACAGTCACAGGTGGGGAATCAA
ACCAAAAAAATTGAAAAAAAATCGTTGTGAAACACTGAGGGAATAATTGA
GAGTGGAAGATGTAAAAAATTAAAAAAAATCACGAGGGCGAGAGGAATCC
TCAAGTTTTTCAACCATTCTACCGTGTTGGCGTTGTACTGCCTATAATAC
AGTACTTGTAGTATGTGCTCTATATCGTAAGACCTTCGCTAGCCTGTGTC
GTTCGGTTAGGTGGTTCTGGGTCATAATAAACAGTACACTTGGACACTAT
AATAATTTAATAGGTAAGGATGTACGGCAGAGCTATGTATATATGGTCAT
CACATTTGGCAGAGTTTAGATCAACCGAGTAAGGTTGCCAATCCTGCTCG
TGGTCAGCTGAACAGGGAAAATTTGTATTTACCTGTCCCAGTTCGCGCAT
GGGGAATTTGATCCCGCGAGACCGGGGTTCAGCCGTCCCGTCCCGCGTCA
GCCTGCTCATTCTCCGCACTCAGGCCGAACCTGGTGCTTCCTCACGGGAT
TCCTCCCGATTTCCACGGCGGCGTCCATTTAATATTTTAAACGGCCATAC
GCCATTGGGTCAGTCCCGAGTTTATCGGGTCACGCAATTGCGCACCGATG
GCGTTCACTGCCGAGAGTCCGCCGGCTCAGGGCCAGTGGTCAAGGTAGTC
CCAGTAACGGGTGCTGCCTTTGCAGGTCGCCATGGACTATGACCAATTAA
TAATGTGCTGCGCCTCTCTTTTCCCACACCCACTATACTAATATACTACT
ATTAGTATGAAGTGGCTATAGCATGTTGAAAGTATTCGTGTACCTAGTAT
TTTACAACAGTGGTAAATGTTCTCAGCGTCAAGCTTCAATCGGTTGCCTC
ATCAAAAAGTACAAAATTTTTAAAGAGAATATTCTGTGCCCGGCTCCTTC
TCAAGCCCCCCCCTCCGCGTGCGCTGCTTGCTGCCCCCTTAAGAATGCCC
CGGTGGTGGCGTGGGCGTCGAGCTTTGGCCCCCGGGAACTCATCCACGAC
GCGGTCCGCGCCGCCTTCCCCGTCGTTGTCCTACGTGACTCTCGTGGGCA
ACGGGGCCAACGACTGCGACATGGGGGGCGGACTTTACGTCACGTTTGCG
GCGGCGACGGCCGACGGGGCGAGAAAAGGCATTGGAGAGGCGGAGTTTGG
GGAGGGGACGGGAGGGGGCGATGACAACGCCGGGAGCTCCGGGGCAGCAG
CAACCACAGTCGCGGTGGCAGTCGCGCCCACAATGATGGCGTCCCCCGAC
ACGGCAATGGTCACGGTAACGGGATGCCTCGTCTCCAACAACAGCGCACG
GCTGGGCGGCGGGATCGCCGTCGAGGGTACGCTTCCGTCGTCGCCGCCAT
CCCTCTCGCCGGTAGACACCTCTTTGCTTCGACCGGGGACGCCGGGGCGC
GATGACCGTCAGGAAGCTGTCACTCAAAGAGTGGAGGAAAGGAGGGCGCT
TGGTTCGCTACAGCGGGTGCGATCGTCAGGGTTCCGGGTGCATTGGAGAC
GTTGGGCGGAGTCTCTATCGAAGGGAACACGGTGGTTGCGGGAAACCAGG
CGGCCTCGGGCGGGGGCGTCTGGGCGTCAGGTGCACGGGTTTCCGCTGTC
GGCGGAGGCGTGGTGGTGAGGGATAACGTCGCAGAGGGGCTGACGAAGGG
CTGCGGAGAAGATGTGAGAGTTTTTTATTGTTACGATATATTACTAGGAA
GAATAAAGGTCAGGGCGGGCGAATGTAACATCATTGGGACGCGCTTGTAT
TATGTTCTCTCTTTTTTTTTTTTTACGATAACGTTTGTATTTATTATTCT
TAGTTAGTGGCAGTTATCTATGGTTTGTTTTCGCTGCGCTCTGCGGTCAT
GGCAGCCCCTCCCTCCCTCGCTGCCGCGTCGAACTACGTCGATCGGGCAT
CGAGTCTATATTGCGCGGAGCAACGCCCGATCCGAGATGGCTCGTGCTTG
CATGTACTATCATACTATTTAATATCATACTATTGCTTTTGCGGCATCTT
CGAGATGGTTTTTCGCGAGAGTGCTCTTGACCTTTTTTGTCTTTGCTCTA
GCCTTTTGCGCTCAAATGCTCGCGTACACACCAAACAGAGGTATATTTTT
GTTCTCTCTGTTTTTTTTTTTATGACAACAACCACAAGCGCGTAGTCCTT
TTGTGCGAAATCGACACGAAATTTATGTGCTGGAGTCTGTCTCTCTCTAG
CTTTCTCATGTGTCTCTGATCAGGATGTTTTCTTTTCCTTCGGTCTGAAG
TAAGGTTCACAAGCCTTGGTTGATGACGTGAAGGAGGGCTGAATTTGACG
TCACGATCAGATAAAAATCGCAGGCGTGAACCAATAATAAAATATTAAAA
AAATTACATCTGAAGTGCTGAATTTGGCGTCGCGATTAAAAAAAAAATGT
ATATGGTATATGGTAGGGGTGAACGAAGGAGAAAAAATAATGTACCAGTA
GAAAATAATGACGTGTAGGAGGAGTGCTGAATTTGACATAGCGATTGAAA
ATAAATCGCAGGCGTGAACCGAGGGGGAGAAGAAAAAATAAGTTCAAGCA
AAAAACTTCAAGCCATTCAACCCCAGCAATCACGTGGTGTTCGTTCAAAT
ATAATATTTCGTACCATAGTATGCTATAAACAGCGCAACAAAATATTTTT
TAGATTACTGCCCCCGCACCGGCTGCTTCATAAAACGCGGGC back to topCoding sequence (CDS) from alignment at F-serratus_M_contig1005:291467..295908- >mRNA_F-serratus_M_contig1005.163.1 ID=mRNA_F-serratus_M_contig1005.163.1|Name=mRNA_F-serratus_M_contig1005.163.1|organism=Fucus serratus male|type=CDS|length=1350bp|location=Sequence derived from alignment at F-serratus_M_contig1005:291467..295908- (Fucus serratus male) ATGCCCCGGTGGTGGCGTGGGCGTCGAGCTTTGGCCCCCGGGAACTCATC CACGACGCGGTCCGCGCCGCCTTCCCCGTCGTTGTCCTACGTGACTCTCG TGGGCAACGGGGCCAACGACTGCGACATGGGGGGCGGACTTTACGTCACG TTTGCGGCGGCGACGGCCGACGGGGCGAGAAAAGGCATTGGAGAGGCGGA GTTTGGGGAGGGGACGGGAGGGGGCGATGACAACGCCGGGAGCTCCGGGG CAGCAGCAACCACAGTCGCGGTGGCAGTCGCGCCCACAATGATGGCGTCC CCCGACACGGCAATGGTCACGGTAACGGGATGCCTCGTCTCCAACAACAG CGCACGGCTGGGCGGCGGGATCGCCGTCGAGGGTACGCTTCCGTCGTCGC CGCCATCCCTCTCGCCGGTAGACACCTCTTTGCTTCGACCGGGGACGCCG GGGCGCGATGACCGTCAGGAAGCTGTCACTCAAAGAGTGGAGGAAAGGAG GGCGCTTGGTTCGCTACAGCGGGTGCGATCGTCAGGGTTCCGGGTGCATT GGAGACGTTGGGCGGAGTCTCTATCGAAGGGAACACGGTGGTTGCGGGAA ACCAGGCGGCCTCGGGCGGGGGCGTCTGGGCGTCAGGTGCACGGGTTTCC GCTGTCGGCGGAGGCGTGGTGGTGAATGCCCCGGTGGTGGCGTGGGCGTC GAGCTTTGGCCCCCGGGAACTCATCCACGACGCGGTCCGCGCCGCCTTCC CCGTCGTTGTCCTACGTGACTCTCGTGGGCAACGGGGCCAACGACTGCGA CATGGGGGGCGGACTTTACGTCACGTTTGCGGCGGCGACGGCCGACGGGG CGAGAAAAGGCATTGGAGAGGCGGAGTTTGGGGAGGGGACGGGAGGGGGC GATGACAACGCCGGGAGCTCCGGGGCAGCAGCAACCACAGTCGCGGTGGC AGTCGCGCCCACAATGATGGCGTCCCCCGACACGGCAATGGTCACGGTAA CGGGATGCCTCGTCTCCAACAACAGCGCACGGCTGGGCGGCGGGATCGCC GTCGAGGGTACGCTTCCGTCGTCGCCGCCATCCCTCTCGCCGGTAGACAC CTCTTTGCTTCGACCGGGGACGCCGGGGCGCGATGACCGTCAGGAAGCTG TCACTCAAAGAGTGGAGGAAAGGAGGGCGCTTGGTTCGCTACAGCGGGTG CGATCGTCAGGGTTCCGGGTGCATTGGAGACGTTGGGCGGAGTCTCTATC GAAGGGAACACGGTGGTTGCGGGAAACCAGGCGGCCTCGGGCGGGGGCGT CTGGGCGTCAGGTGCACGGGTTTCCGCTGTCGGCGGAGGCGTGGTGGTGA back to top
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