mRNA_F-serratus_M_contig1005.163.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1005.163.1
Unique NamemRNA_F-serratus_M_contig1005.163.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1005.163.1 vs. uniprot
Match: D7FTH4_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTH4_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 7.120e-26
Identity = 64/125 (51.20%), Postives = 80/125 (64.00%), Query Frame = 1 
Query:   28 LSESETPELRLLPGAYTGDQNVFIGGSADSDYPSHARNVNLIGWNST---------GVGNGTAVLSCQGRDRQQSRVSDVTGLAAAVAEGSKASRGIWLSEGRITRLANLTVTECPGGGVGVELW 375
            ++E   PELRLLPG YTG++NVFIGG  D +YPS ARNV+++GW ++            +  AV+SCQGR       SD         +   A+RGIWLSEGRIT LANLTVT+CP GGVGV+ W
Sbjct:    1 MAEGSRPELRLLPGLYTGNRNVFIGGIGDKEYPSAARNVSIVGWGASPHVAEEPAHAYASTAAVISCQGRK------SD--------GDSHPATRGIWLSEGRITSLANLTVTDCPAGGVGVDAW 111
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1005.163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTH4_ECTSI7.120e-2651.20Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1005contigF-serratus_M_contig1005:291467..295908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons4
Model size1099
Cds size675
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1005.163.1prot_F-serratus_M_contig1005.163.1Fucus serratus malepolypeptideF-serratus_M_contig1005 292540..293214 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928796.6394217-UTR-F-serratus_M_contig1005:291466..2915051622928796.6394217-UTR-F-serratus_M_contig1005:291466..291505Fucus serratus maleUTRF-serratus_M_contig1005 291467..291505 -
1690962576.071018-UTR-F-serratus_M_contig1005:291466..2915051690962576.071018-UTR-F-serratus_M_contig1005:291466..291505Fucus serratus maleUTRF-serratus_M_contig1005 291467..291505 -
1622928796.6502614-UTR-F-serratus_M_contig1005:292495..2925391622928796.6502614-UTR-F-serratus_M_contig1005:292495..292539Fucus serratus maleUTRF-serratus_M_contig1005 292496..292539 -
1690962576.0837736-UTR-F-serratus_M_contig1005:292495..2925391690962576.0837736-UTR-F-serratus_M_contig1005:292495..292539Fucus serratus maleUTRF-serratus_M_contig1005 292496..292539 -
1622928796.6781123-UTR-F-serratus_M_contig1005:293214..2932151622928796.6781123-UTR-F-serratus_M_contig1005:293214..293215Fucus serratus maleUTRF-serratus_M_contig1005 293215..293215 -
1690962576.1009605-UTR-F-serratus_M_contig1005:293214..2932151690962576.1009605-UTR-F-serratus_M_contig1005:293214..293215Fucus serratus maleUTRF-serratus_M_contig1005 293215..293215 -
1622928796.699779-UTR-F-serratus_M_contig1005:294170..2943731622928796.699779-UTR-F-serratus_M_contig1005:294170..294373Fucus serratus maleUTRF-serratus_M_contig1005 294171..294373 -
1690962576.1098685-UTR-F-serratus_M_contig1005:294170..2943731690962576.1098685-UTR-F-serratus_M_contig1005:294170..294373Fucus serratus maleUTRF-serratus_M_contig1005 294171..294373 -
1622928796.717243-UTR-F-serratus_M_contig1005:295771..2959081622928796.717243-UTR-F-serratus_M_contig1005:295771..295908Fucus serratus maleUTRF-serratus_M_contig1005 295772..295908 -
1690962576.1220286-UTR-F-serratus_M_contig1005:295771..2959081690962576.1220286-UTR-F-serratus_M_contig1005:295771..295908Fucus serratus maleUTRF-serratus_M_contig1005 295772..295908 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928796.6628537-CDS-F-serratus_M_contig1005:292539..2932141622928796.6628537-CDS-F-serratus_M_contig1005:292539..293214Fucus serratus maleCDSF-serratus_M_contig1005 292540..293214 -
1690962576.0922894-CDS-F-serratus_M_contig1005:292539..2932141690962576.0922894-CDS-F-serratus_M_contig1005:292539..293214Fucus serratus maleCDSF-serratus_M_contig1005 292540..293214 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1005.163.1

>prot_F-serratus_M_contig1005.163.1 ID=prot_F-serratus_M_contig1005.163.1|Name=mRNA_F-serratus_M_contig1005.163.1|organism=Fucus serratus male|type=polypeptide|length=225bp
MPRWWRGRRALAPGNSSTTRSAPPSPSLSYVTLVGNGANDCDMGGGLYVT
FAAATADGARKGIGEAEFGEGTGGGDDNAGSSGAAATTVAVAVAPTMMAS
PDTAMVTVTGCLVSNNSARLGGGIAVEGTLPSSPPSLSPVDTSLLRPGTP
GRDDRQEAVTQRVEERRALGSLQRVRSSGFRVHWRRWAESLSKGTRWLRE
TRRPRAGASGRQVHGFPLSAEAWW*
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mRNA from alignment at F-serratus_M_contig1005:291467..295908-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1005.163.1 ID=mRNA_F-serratus_M_contig1005.163.1|Name=mRNA_F-serratus_M_contig1005.163.1|organism=Fucus serratus male|type=mRNA|length=4442bp|location=Sequence derived from alignment at F-serratus_M_contig1005:291467..295908- (Fucus serratus male)
AGCGCACTGCTGGCGATCCCCGCCAATCTATCGGAGAGCGAGACGCCGGA
ACTGCGGCTTCTTCCGGGCGCTTACACCGGCGACCAAAACGTTTTCATCG
GAGGGTCCGCCGACAGCGACTACCCTTCCCACGCGAGGTACAGGGTATAG
TACACTTTTTAGGGTACACCTTATATTAGTAGGTGACAGGACCGCCGTGT
CCCCGTCGATTTCCTTGTAGTTAGCATTTAGCTGACGGGTTTTACCAGCA
GGATGGGCAATTTCAGGGCACGTTTGGCGAAAATGTCGACGTCATCTCCA
AACTGCATGATTACAGTTCATAGTTCGTATTCGTATACGCTAAGCTTTCT
CCGTATTCGAGTATTTTTTTCTTCTTCTTTTCTTTCTTTGATCTCACTTA
TTAATAGTATAGCCGATGGGCCTCATCATTGCCATCCTGCCTGTGGTCAC
AAAGGATCTTCCCATCTCTCCCCGGTTCACGCCTTACAATTTTTTTATCG
CGATGCAATGTCGTTCAGCAATCTTACAACTCATCAACCAATGGTTGAAT
TTTACTTACTCCTACTTTGGAGAACACAAATCCTACTTTGGTGAAAATCG
AACTCAAGACTTCCGCACTAGCAGGTGTGCAGGTTACCTACCAGACCACT
CGGGCGACGAGGTACTACTGCACACTTGATTGATTAGTTTTCTTCTTAAT
ACAGATGTATGTAGCAGCAGTATTTCGTGTTGTTTTCCATGTTGGCGCCC
GGGGCGGATCGAGTTCCCATGGTGCTGACTGTACGCGATCCCCTGTAGAA
ATATACCCTTCCACTGTGAAAACCCGAACCCGTTTTTTCTCCCGTTTCCG
TATAGTGTACCAAGTGTTATTACTATAGTGTATTTCACAGAACAGTATGT
ATCTATTATCATACAGAGATGTATGCATTATATATATATATATATATGTA
CGTATGTGCAGCTCTCACGATGTAGGTACCTTATGCAGTACACCATGTAC
ACCGTAGTGTTCGGAGCGAACGCCTCCCTCGGGGAAAGAACCCCCCCCCC
CACACCCCCACTTTTATCTTGATTACAAGGCAGAATGCCGCTCAAAATAT
TTGTTGAAATAGCCCTTAGCAAGACCTTTCGAATGCCGCGTTGTTCGATG
GGAGGTCTCTGGCTCAGTCGGTCAAGAGAAAAATTTGGAGGGTGGGAGAT
TTTTTTTTCCGGGGGGGGGCGAGTCCTCTCCGAACACGAGGGCAAATCCT
ATTGCTTTACAGTATATTATTCTCGCCGTTCACAAAAATTCCGCACGTTC
TAGAGTTTTGTTTTTTTTCGTGGGGATGTTTGTGTTCTGTTTTTTCGTTA
AGTCCCACACCACGCGCGATCGCAAAGTGTAGGTGTGGCTTTTTTTTGGT
TTCCCCTGGATTTTTCTTGAAATTCTCGCCGCCAGCAAAAAAAAAAAAAA
AAAAGTGTTACCACCCAGCCCCGCTCCCCTTCTGTTTCCCTTCTTTTTGT
TTTCGCTTCGCTGTCTTCCGCGACGGTTTCAATAGGAACGTCAACCTCAT
CGGATGGAACTCCACCGGCGTCGGCAATGGAACCGCGGTGCTTTCTTGCC
AGGGAAGGGATCGTCAACAGTCCCGCGTCAGTGACGTCACGGGATTGGCT
GCGGCCGTGGCGGAGGGATCGAAGGCCTCTCGAGGGATCTGGTTGAGCGA
GGGTCGAATCACGCGTCTGGCAAATTTGACAGTCACAGGTGGGGAATCAA
ACCAAAAAAATTGAAAAAAAATCGTTGTGAAACACTGAGGGAATAATTGA
GAGTGGAAGATGTAAAAAATTAAAAAAAATCACGAGGGCGAGAGGAATCC
TCAAGTTTTTCAACCATTCTACCGTGTTGGCGTTGTACTGCCTATAATAC
AGTACTTGTAGTATGTGCTCTATATCGTAAGACCTTCGCTAGCCTGTGTC
GTTCGGTTAGGTGGTTCTGGGTCATAATAAACAGTACACTTGGACACTAT
AATAATTTAATAGGTAAGGATGTACGGCAGAGCTATGTATATATGGTCAT
CACATTTGGCAGAGTTTAGATCAACCGAGTAAGGTTGCCAATCCTGCTCG
TGGTCAGCTGAACAGGGAAAATTTGTATTTACCTGTCCCAGTTCGCGCAT
GGGGAATTTGATCCCGCGAGACCGGGGTTCAGCCGTCCCGTCCCGCGTCA
GCCTGCTCATTCTCCGCACTCAGGCCGAACCTGGTGCTTCCTCACGGGAT
TCCTCCCGATTTCCACGGCGGCGTCCATTTAATATTTTAAACGGCCATAC
GCCATTGGGTCAGTCCCGAGTTTATCGGGTCACGCAATTGCGCACCGATG
GCGTTCACTGCCGAGAGTCCGCCGGCTCAGGGCCAGTGGTCAAGGTAGTC
CCAGTAACGGGTGCTGCCTTTGCAGGTCGCCATGGACTATGACCAATTAA
TAATGTGCTGCGCCTCTCTTTTCCCACACCCACTATACTAATATACTACT
ATTAGTATGAAGTGGCTATAGCATGTTGAAAGTATTCGTGTACCTAGTAT
TTTACAACAGTGGTAAATGTTCTCAGCGTCAAGCTTCAATCGGTTGCCTC
ATCAAAAAGTACAAAATTTTTAAAGAGAATATTCTGTGCCCGGCTCCTTC
TCAAGCCCCCCCCTCCGCGTGCGCTGCTTGCTGCCCCCTTAAGAATGCCC
CGGTGGTGGCGTGGGCGTCGAGCTTTGGCCCCCGGGAACTCATCCACGAC
GCGGTCCGCGCCGCCTTCCCCGTCGTTGTCCTACGTGACTCTCGTGGGCA
ACGGGGCCAACGACTGCGACATGGGGGGCGGACTTTACGTCACGTTTGCG
GCGGCGACGGCCGACGGGGCGAGAAAAGGCATTGGAGAGGCGGAGTTTGG
GGAGGGGACGGGAGGGGGCGATGACAACGCCGGGAGCTCCGGGGCAGCAG
CAACCACAGTCGCGGTGGCAGTCGCGCCCACAATGATGGCGTCCCCCGAC
ACGGCAATGGTCACGGTAACGGGATGCCTCGTCTCCAACAACAGCGCACG
GCTGGGCGGCGGGATCGCCGTCGAGGGTACGCTTCCGTCGTCGCCGCCAT
CCCTCTCGCCGGTAGACACCTCTTTGCTTCGACCGGGGACGCCGGGGCGC
GATGACCGTCAGGAAGCTGTCACTCAAAGAGTGGAGGAAAGGAGGGCGCT
TGGTTCGCTACAGCGGGTGCGATCGTCAGGGTTCCGGGTGCATTGGAGAC
GTTGGGCGGAGTCTCTATCGAAGGGAACACGGTGGTTGCGGGAAACCAGG
CGGCCTCGGGCGGGGGCGTCTGGGCGTCAGGTGCACGGGTTTCCGCTGTC
GGCGGAGGCGTGGTGGTGAGGGATAACGTCGCAGAGGGGCTGACGAAGGG
CTGCGGAGAAGATGTGAGAGTTTTTTATTGTTACGATATATTACTAGGAA
GAATAAAGGTCAGGGCGGGCGAATGTAACATCATTGGGACGCGCTTGTAT
TATGTTCTCTCTTTTTTTTTTTTTACGATAACGTTTGTATTTATTATTCT
TAGTTAGTGGCAGTTATCTATGGTTTGTTTTCGCTGCGCTCTGCGGTCAT
GGCAGCCCCTCCCTCCCTCGCTGCCGCGTCGAACTACGTCGATCGGGCAT
CGAGTCTATATTGCGCGGAGCAACGCCCGATCCGAGATGGCTCGTGCTTG
CATGTACTATCATACTATTTAATATCATACTATTGCTTTTGCGGCATCTT
CGAGATGGTTTTTCGCGAGAGTGCTCTTGACCTTTTTTGTCTTTGCTCTA
GCCTTTTGCGCTCAAATGCTCGCGTACACACCAAACAGAGGTATATTTTT
GTTCTCTCTGTTTTTTTTTTTATGACAACAACCACAAGCGCGTAGTCCTT
TTGTGCGAAATCGACACGAAATTTATGTGCTGGAGTCTGTCTCTCTCTAG
CTTTCTCATGTGTCTCTGATCAGGATGTTTTCTTTTCCTTCGGTCTGAAG
TAAGGTTCACAAGCCTTGGTTGATGACGTGAAGGAGGGCTGAATTTGACG
TCACGATCAGATAAAAATCGCAGGCGTGAACCAATAATAAAATATTAAAA
AAATTACATCTGAAGTGCTGAATTTGGCGTCGCGATTAAAAAAAAAATGT
ATATGGTATATGGTAGGGGTGAACGAAGGAGAAAAAATAATGTACCAGTA
GAAAATAATGACGTGTAGGAGGAGTGCTGAATTTGACATAGCGATTGAAA
ATAAATCGCAGGCGTGAACCGAGGGGGAGAAGAAAAAATAAGTTCAAGCA
AAAAACTTCAAGCCATTCAACCCCAGCAATCACGTGGTGTTCGTTCAAAT
ATAATATTTCGTACCATAGTATGCTATAAACAGCGCAACAAAATATTTTT
TAGATTACTGCCCCCGCACCGGCTGCTTCATAAAACGCGGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1005:291467..295908-

>mRNA_F-serratus_M_contig1005.163.1 ID=mRNA_F-serratus_M_contig1005.163.1|Name=mRNA_F-serratus_M_contig1005.163.1|organism=Fucus serratus male|type=CDS|length=1350bp|location=Sequence derived from alignment at F-serratus_M_contig1005:291467..295908- (Fucus serratus male)
ATGCCCCGGTGGTGGCGTGGGCGTCGAGCTTTGGCCCCCGGGAACTCATC
CACGACGCGGTCCGCGCCGCCTTCCCCGTCGTTGTCCTACGTGACTCTCG
TGGGCAACGGGGCCAACGACTGCGACATGGGGGGCGGACTTTACGTCACG
TTTGCGGCGGCGACGGCCGACGGGGCGAGAAAAGGCATTGGAGAGGCGGA
GTTTGGGGAGGGGACGGGAGGGGGCGATGACAACGCCGGGAGCTCCGGGG
CAGCAGCAACCACAGTCGCGGTGGCAGTCGCGCCCACAATGATGGCGTCC
CCCGACACGGCAATGGTCACGGTAACGGGATGCCTCGTCTCCAACAACAG
CGCACGGCTGGGCGGCGGGATCGCCGTCGAGGGTACGCTTCCGTCGTCGC
CGCCATCCCTCTCGCCGGTAGACACCTCTTTGCTTCGACCGGGGACGCCG
GGGCGCGATGACCGTCAGGAAGCTGTCACTCAAAGAGTGGAGGAAAGGAG
GGCGCTTGGTTCGCTACAGCGGGTGCGATCGTCAGGGTTCCGGGTGCATT
GGAGACGTTGGGCGGAGTCTCTATCGAAGGGAACACGGTGGTTGCGGGAA
ACCAGGCGGCCTCGGGCGGGGGCGTCTGGGCGTCAGGTGCACGGGTTTCC
GCTGTCGGCGGAGGCGTGGTGGTGAATGCCCCGGTGGTGGCGTGGGCGTC
GAGCTTTGGCCCCCGGGAACTCATCCACGACGCGGTCCGCGCCGCCTTCC
CCGTCGTTGTCCTACGTGACTCTCGTGGGCAACGGGGCCAACGACTGCGA
CATGGGGGGCGGACTTTACGTCACGTTTGCGGCGGCGACGGCCGACGGGG
CGAGAAAAGGCATTGGAGAGGCGGAGTTTGGGGAGGGGACGGGAGGGGGC
GATGACAACGCCGGGAGCTCCGGGGCAGCAGCAACCACAGTCGCGGTGGC
AGTCGCGCCCACAATGATGGCGTCCCCCGACACGGCAATGGTCACGGTAA
CGGGATGCCTCGTCTCCAACAACAGCGCACGGCTGGGCGGCGGGATCGCC
GTCGAGGGTACGCTTCCGTCGTCGCCGCCATCCCTCTCGCCGGTAGACAC
CTCTTTGCTTCGACCGGGGACGCCGGGGCGCGATGACCGTCAGGAAGCTG
TCACTCAAAGAGTGGAGGAAAGGAGGGCGCTTGGTTCGCTACAGCGGGTG
CGATCGTCAGGGTTCCGGGTGCATTGGAGACGTTGGGCGGAGTCTCTATC
GAAGGGAACACGGTGGTTGCGGGAAACCAGGCGGCCTCGGGCGGGGGCGT
CTGGGCGTCAGGTGCACGGGTTTCCGCTGTCGGCGGAGGCGTGGTGGTGA
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