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Homology
BLAST of mRNA_F-serratus_M_contig1005.160.1 vs. uniprot
Match: D7FTG0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTG0_ECTSI) HSP 1 Score: 77.4 bits (189), Expect = 8.420e-13 Identity = 88/190 (46.32%), Postives = 99/190 (52.11%), Query Frame = 1
Query: 79 ITNKAEAEALSLEELKTELESRGVLTEGLKQAIMLETLLKHLEAAASTNGDSTKEVAEPNXXXXXXXXXXXXESAKGEEINKDAVPDAAILEAEVTXXXXXXXXXXDPKQDDTAAPAEPASAEEPADKPAEEIVAPAAEGATPTRPADEVSGGTELPEAKKPKADVDPETAEPSKSVETPAETPVAEPAA 648
++ KAEAEALS+EEL TEL SRG+ TEGLKQ MLETLLKHLE AA TNG + + A XXXXXXX ++ EA XXXXXXXXXX TR DEVSGGTE P+AKK KAD AEP+K VET E P +EPAA
Sbjct: 2 VSTKAEAEALSVEELTTELTSRGLPTEGLKQPAMLETLLKHLETAA-TNGTAAEAPAAEKAAXXXXXXXKKDDAXXXXXXXXXXXXXEKTEEAPAAXXXXXXXXXXXXXXXXXXX---------------------XXXXXXTTRTVDEVSGGTEEPDAKKAKADAPEAAAEPTKVVETATEAPASEPAA 169
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | expressed unknown protein |
Ec32 ortholog | Ec-21_001210.1 |
Exons | 4 |
Model size | 2095 |
Cds size | 579 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928798.4000354-UTR-F-serratus_M_contig1005:191088..192532 | 1622928798.4000354-UTR-F-serratus_M_contig1005:191088..192532 | Fucus serratus male | UTR | F-serratus_M_contig1005 191089..192532 - |
1690962576.8438618-UTR-F-serratus_M_contig1005:191088..192532 | 1690962576.8438618-UTR-F-serratus_M_contig1005:191088..192532 | Fucus serratus male | UTR | F-serratus_M_contig1005 191089..192532 - |
1622928798.4722774-UTR-F-serratus_M_contig1005:196148..196220 | 1622928798.4722774-UTR-F-serratus_M_contig1005:196148..196220 | Fucus serratus male | UTR | F-serratus_M_contig1005 196149..196220 - |
1690962576.8889961-UTR-F-serratus_M_contig1005:196148..196220 | 1690962576.8889961-UTR-F-serratus_M_contig1005:196148..196220 | Fucus serratus male | UTR | F-serratus_M_contig1005 196149..196220 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928798.4111488-CDS-F-serratus_M_contig1005:192532..192616 | 1622928798.4111488-CDS-F-serratus_M_contig1005:192532..192616 | Fucus serratus male | CDS | F-serratus_M_contig1005 192533..192616 - |
1690962576.854488-CDS-F-serratus_M_contig1005:192532..192616 | 1690962576.854488-CDS-F-serratus_M_contig1005:192532..192616 | Fucus serratus male | CDS | F-serratus_M_contig1005 192533..192616 - |
1622928798.4231923-CDS-F-serratus_M_contig1005:192876..193011 | 1622928798.4231923-CDS-F-serratus_M_contig1005:192876..193011 | Fucus serratus male | CDS | F-serratus_M_contig1005 192877..193011 - |
1690962576.8638582-CDS-F-serratus_M_contig1005:192876..193011 | 1690962576.8638582-CDS-F-serratus_M_contig1005:192876..193011 | Fucus serratus male | CDS | F-serratus_M_contig1005 192877..193011 - |
1622928798.4356008-CDS-F-serratus_M_contig1005:193406..193670 | 1622928798.4356008-CDS-F-serratus_M_contig1005:193406..193670 | Fucus serratus male | CDS | F-serratus_M_contig1005 193407..193670 - |
1690962576.872937-CDS-F-serratus_M_contig1005:193406..193670 | 1690962576.872937-CDS-F-serratus_M_contig1005:193406..193670 | Fucus serratus male | CDS | F-serratus_M_contig1005 193407..193670 - |
1622928798.4573588-CDS-F-serratus_M_contig1005:196052..196148 | 1622928798.4573588-CDS-F-serratus_M_contig1005:196052..196148 | Fucus serratus male | CDS | F-serratus_M_contig1005 196053..196148 - |
1690962576.8808444-CDS-F-serratus_M_contig1005:196052..196148 | 1690962576.8808444-CDS-F-serratus_M_contig1005:196052..196148 | Fucus serratus male | CDS | F-serratus_M_contig1005 196053..196148 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1005.160.1 >prot_F-serratus_M_contig1005.160.1 ID=prot_F-serratus_M_contig1005.160.1|Name=mRNA_F-serratus_M_contig1005.160.1|organism=Fucus serratus male|type=polypeptide|length=193bp
MPITNKAEAEALSLEELKTELESRGVLTEGLKQAIMLETLLKHLEAAAST NGDSTKEVAEPNGSSKDDAAPENGESAKGEEINKDAVPDAAILEAEVTLE AEVTLEAEDPKQDDTAAPAEPASAEEPADKPAEEIVAPAAEGATPTRPAD EVSGGTELPEAKKPKADVDPETAEPSKSVETPAETPVAEPAA* back to topmRNA from alignment at F-serratus_M_contig1005:191089..196220- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig1005.160.1 ID=mRNA_F-serratus_M_contig1005.160.1|Name=mRNA_F-serratus_M_contig1005.160.1|organism=Fucus serratus male|type=mRNA|length=5132bp|location=Sequence derived from alignment at F-serratus_M_contig1005:191089..196220- (Fucus serratus male) TCTTCGCACCCGCGACAACCCTTTCCCGTCTCACCCTCTCTAGTCTTTTC
AGCTTCTCCTCTGAAATATATCATGCCTATCACTAACAAGGCCGAAGCGG
AGGCGCTGAGCTTGGAGGAGCTGAAGACTGAGCTCGAGAGCAGGGGAGTG
CTGACAGAGGGACTCAAGGTCGGTCGGTTGGGTGCGCCTTTGTTTCGTTT
TTTTTATCAGGAGCCACGAAAATTGTACGGTACTTTCTTTGTCTTCCCGA
CCCGGTCACCACCGACATCGAGCCCACGTAAACCGAAAGCCCTCGGCGCT
GATCCCACTTGAGCTCAGCGTGTCGGCACGATGTTAGGGTGTCGGCACGG
TGTGCGGATAGGCAGGATCCAAATATGCTTGAAACCTGCGGCGAATGGGA
CGAATCCCAAGACAAACATCTAGGGAGTCCACTGCTATGTTGGTCTTTTT
GTTTGCATTTGAGCGTTTCGCCTTATGTAAAGTTGACCTTACTGACCGTT
AGCTTTTTGGCACCGTCCTGCGAGCACCCATCGATGGCTCAAATTGTCCC
AAGCGGCCGCCGCAGCCAAACATGCCTCGTGTGGCGTGCGGTGTGCGATC
AGAAACTTCAGCTTACCGTGCATCCGTCCGTATCTGCGTAGTAAAAAAAT
GCTATCTTTAAACTACAGATATGTACAGATAGTACAGTACAACAGTAGTA
CAAATACAGTTGCCGAGGTCCCGAGCACTCCGAACAAATGGCGCGCTGTA
GGATCCATCACCCACAGCTGTTTCTCGTGGAACTCGCTCAGACTCACAAC
CCTTGCCAACGTGGCCTAGCGTGGAATGAAGCGCTTGTGTTCTGCTGGAC
TCGTCCAGAGTTACCCTTGGTACTGACAATCTTTTTTGTTGGGCCTGACA
GTTTTTCCTCCACCCGACACCAACCACTCCTATTCGTAGTTTATTTGTGA
GCCTGTGCTGTACTACTGTATCATACCCTTACACGTTGGTGTGTGATGAT
CATCATACATACAAACAGGAAGGAGATCATTTGGCGAGCTTTTTTTTCTT
TCTTCATTTGTTTAAAATCGCGTGGGCTGCCACAACGAAATACAGGATAA
GAGTTAAAAAGGTTATCCAACGTCTCTTAATCCCGTTGTAGTTGATGGTA
GATGCTATTGCCTTTGTGCAATCCCGATAGTCCGGATGGCGGTTTATCCG
ACAAAGTGTAGAGCAGCTGTACGTACTAACTGTACTGTCTGTTAAATGCC
GTTATACTGTAGACTAGTATGAGGGCCACTATCTATCTGTACGTGTAGCT
ACAAATATACCTGGTACATATCTTGTGTGCAGTGTATACCTGGTACATAT
CTTGTGTGCAGTGGGTACACGCCCGTACACCGAACACGTTTTTCTGTACG
ACGATTTTTCTTTAAACCCTCTACGTGTTTTCTTGAAGTCTTTTTGTTTT
CACAATTACATGCCAAGTACATACATACGAGCTTTACGTGACTTTGAAAA
TTGCAGTTACGAATTCCACTGGTTCGTTGGACCTCGGGTTCTCAAGCGAA
GTACTTTGTACTAACTGTTGCAACCTGAATGAAACGTCCACGACCTCCAA
GAATTTTGACTAAACTTTTTAAACGAAGAAAACAGTTAAATCTGGACCAC
AGAGTAGTACTCTGGTATTGTTTATTGATAGCCTGTAACCACGGAAGGCG
TTCGCGTCAGTTGTACCAGTTCGGATGTTAGAAGGCATTGTGCAGAGATC
GGAACGGTTTTTTATGTGAAGACAACAAGTGTCCGTTTTCCTACGCCTCG
GGGGGTGAAGGTTTGTTTTCGGTTTGCACGTATTTCGCTAATGTCCCGTT
GATATCCCAATATAATTGAACAATATAAACTCGCAATGGGGTCGACACCC
ATTCACAAATAAAGTATTCAAGTCATAAAACCCAAGACTGTCAAAACCCA
TAAAGCTCGAAGATTTTCGTCAATCATCCCGCTATGAAAAACACTTATCA
TAGTGCCTAGAGTGCTCAGATCGACTTTTAAAGCATTATTTTTACAGCAA
TGTCAAGAATACGTTTGCTTGATAGAAGGAAAAAAGTACGGTACCTGTAG
GTTTGAGTGATGTTCTTCCGTTTAGCTCAGTTCGCGATGAAGAAGTTTTG
TATTTGCAGCCTATGATATGATCCCACAGCTTTCCCCCCCCCTGACTGGG
AGATGCTCAGAAGGTCTAGGCGCGTTCTGATTTTTTTAGAAACAAGGTTC
TAATAGTTCACTTCTATTTGGTACCGTAGAAAACATGGTTGGGTTTATTT
CTCCGCTTTTGCTCTTCATATGTCCGATCAAAGTGTGAAGTTTTTGAAAA
AGGCACAAAAAACCCCGTGTTTTTTCCCGTCCATTTCCAAGACATGGTAA
TTTTCCTTGTTCAGCTGACCACGAGCACAGAGTTAGTTATTAACCACATA
TCCAGTGGATCCTCAGTTTGCTGAATATGATGACCACAGATGAACACGTG
CCAAATCAAGTTCCGCTATTATTTATTGTACTTTGCCTGTGATTATTCAG
CAAGCTATCATGCTCGAGACTCTCCTCAAGCACCTCGAAGCTGCTGCCTC
TACGAACGGCGACTCGACGAAGGAAGTCGCCGAGCCAAACGGCAGCAGCA
AGGACGACGCCGCCCCTGAAAACGGGGAAAGCGCCAAGGGTGAAGAGATC
AACAAGGACGCCGTACCGGACGCGGCCATCTTGGAGGCAGAGGTCACCTT
GGAGGCGGAGGTAACTTTGGAGGCGGAGGACCCCAAGCAAGACGACACAG
CTGCACCTGCTGAAGTGAGTGTTGTACTGTAGATGCTGTATACGACACCA
GTAACTGTTGGAGAGAAGCCGCTATCATAAATAACTAACCCCTGACCGAC
CGATTTGGAAAGCCATCAAGGTTCTGACATATTTTACTCTTTCATCAAAT
CAAGTCTTGTGACGCCGAGGTGAACAAATCTATGATGTACATGACTACCA
TACAAGTAGTAGAAAGAACCGGGAGAGGCTGGTTCACATAAAACTTAAGA
ATGAATTTTGGTGGATCCCTCAAATACGTGCGAATTCATGCCCCACCCCC
ACACCCCGCCACCCCCAACCCTCGTTTCTCCCTGTTCTACTGCATGTGCT
TACCTGGTACTGTATGTACCATCTGACGTCCGGCCCTCTCTTTTCCAATT
TCGCTTCAGCCGGCATCTGCGGAAGAACCAGCAGACAAACCCGCCGAAGA
AATCGTGGCTCCCGCCGCGGAGGGTGCGACGCCTACCCGACCAGCGGACG
AGGTGTCCGGTGGTACCGAGCTGCCGGAGGCCAAGAAGCCCAAGGTGTGT
GTACTCGTGACATTTTTGTGAACCATCACACAGCGAGAACGTCAGCCTTA
CGTTTATTCATATGAGGTTGTTCAATACACGTTTCTTTGCCGACGTCATT
GGACTATCAATAAAATGGCGGACGTTTCCTTCTCAATCCGATTCTTAACG
ACGAATGTTTCTCCAAAGCCGTTGCACTCACTTTTGAATGTATACAGCAA
TCAAATCCCTAACAAGCGCAATCGAACCCGTTTTCACGTCCCGACTCTCT
ACAGGCGGATGTCGACCCCGAGACCGCTGAGCCTTCCAAATCAGTAGAAA
CCCCAGCAGAGACTCCAGTTGCGGAGCCGGCCGCGTGAGCCGATCTCTTC
TAGGCTACTCGCCGACACGCGCACAGCGTATGCCCTGCCTGTTGTAGTAT
TTTCTATCTTTGTGCCCCGTTCGCCGCGAGTTTTAACTCCGGTGCACGAG
GGGGTGTGAAAACAGGGAGGCGTTTTGTGCTTGGGATCTGGCGTAGTATC
CGGTTCACTGTCTTTGTTGTGTGAAGGTGCTCGTTTATTTCTGCTTTCTA
CATTATTTTTGTTGTGTTTTGTTTTACAGCTTTTGTTTCCTGATTGTCAG
CAGCAACTCATTTATGCCAAGGTTTCGTCGCCCTACAGTAGTTCCGAGTA
CAGTAGGCACCTTTGGTTGAAAGGCAAACGCGAGATTGGATTGATCGCTC
TCGCATGTTGTGGAATGGGTTGGAAGGATGAGGTAGAAACTACAGTGCAA
GGCAGCACGAGACGTTCCAAGCCCTTCTTCGTTGAGACGTCAGGTGTGCA
GTGTAGCTAGACGAGGAGAGGCGGGTTCAGAGGTTTAGTACTCCCAGCAA
CACCTGGGCCCGTCGGTGAACGGTTGTAATGGTGAGAGGCGTCAAAGTTG
CCGAGGCTAGTACATAACACCCCTAGTTATTGATCGACCGACTCGGAGGT
AGGTGTTGTTGGAAAGCGACGCTAGGAGGGGTTGAGTCAAGAAGCGTTAG
ATAAACTCATGAAATCCTGCCCCGTCCGCTTGGAAACGTGTGATCAACGC
AGAGTTCAACAGCGGCGAGGGGAGTCGGCGGGCTTGTTGAGCTTTCTTTT
TTTCTCAAGCCCTTTCCCGCCTTTGTTTATTATTGCGAAATATCTCCTGT
TGGAATAGATCAGGGATATAGAAGAGGCTGCCGCGCTGCTTCCGAGCTAT
GTAGATCTTGTCACTACTGTACCGAATGTTGCCGAATGCGAGTAGCTGAC
AGCATAGTATTTACAGAATCAGTTCAGTGGCGTGAGCCACCAAGAAGCCT
CTTTGTAGTTAGCTTCATTCAGCTAGACGACCGACCGCTCACGGAATGTA
GCAGAAGAGCTGGTTATAGGTAGAGGAATCCAACGCCTGTGCTGATCACC
CTCTTTCGTGTGTAACGTATTACCCGTCGACTTTTGTCTTCTGACGTGGC
TGTGGTACAATACGGTACATCAGTAGTGTATGCGATAGGGATCGGTACGT
GTTTCGTTTGGACCCTGTAGTATATATCGTAGTTACATAGTACTATAGTA
TTTTCATGGGTTGTGCAGCAAGCGAGCTAAGGACGAAGTTATTACAGTTT
GCGTTGGGTGAGGGTTGACAAGATCGCTCGATGCGAGGCTGCCCGAGGTG
GAGACATGAAATGTACCTCATATTTATGTACCTCATTATTTTTTTAAGGT
GTTACACCCAAAGAAGAAATCGAGTTTTACTTACTACCACCACAACAGCA
TGGCACTTCCCGCTAGAGAGCTTCATAAATCG back to topCoding sequence (CDS) from alignment at F-serratus_M_contig1005:191089..196220- >mRNA_F-serratus_M_contig1005.160.1 ID=mRNA_F-serratus_M_contig1005.160.1|Name=mRNA_F-serratus_M_contig1005.160.1|organism=Fucus serratus male|type=CDS|length=1158bp|location=Sequence derived from alignment at F-serratus_M_contig1005:191089..196220- (Fucus serratus male) ATGCCTATCACTAACAAGGCCGAAGCGGAGGCGCTGAGCTTGGAGGAGCT GAAGACTGAGCTCGAGAGCAGGGGAGTGCTGACAGAGGGACTCAAGATGC CTATCACTAACAAGGCCGAAGCGGAGGCGCTGAGCTTGGAGGAGCTGAAG ACTGAGCTCGAGAGCAGGGGAGTGCTGACAGAGGGACTCAAGCAAGCTAT CATGCTCGAGACTCTCCTCAAGCACCTCGAAGCTGCTGCCTCTACGAACG GCGACTCGACGAAGGAAGTCGCCGAGCCAAACGGCAGCAGCAAGGACGAC GCCGCCCCTGAAAACGGGGAAAGCGCCAAGGGTGAAGAGATCAACAAGGA CGCCGTACCGGACGCGGCCATCTTGGAGGCAGAGGTCACCTTGGAGGCGG AGGTAACTTTGGAGGCGGAGGACCCCAAGCAAGACGACACAGCTGCACCT GCTGAACAAGCTATCATGCTCGAGACTCTCCTCAAGCACCTCGAAGCTGC TGCCTCTACGAACGGCGACTCGACGAAGGAAGTCGCCGAGCCAAACGGCA GCAGCAAGGACGACGCCGCCCCTGAAAACGGGGAAAGCGCCAAGGGTGAA GAGATCAACAAGGACGCCGTACCGGACGCGGCCATCTTGGAGGCAGAGGT CACCTTGGAGGCGGAGGTAACTTTGGAGGCGGAGGACCCCAAGCAAGACG ACACAGCTGCACCTGCTGAACCGGCATCTGCGGAAGAACCAGCAGACAAA CCCGCCGAAGAAATCGTGGCTCCCGCCGCGGAGGGTGCGACGCCTACCCG ACCAGCGGACGAGGTGTCCGGTGGTACCGAGCTGCCGGAGGCCAAGAAGC CCAAGCCGGCATCTGCGGAAGAACCAGCAGACAAACCCGCCGAAGAAATC GTGGCTCCCGCCGCGGAGGGTGCGACGCCTACCCGACCAGCGGACGAGGT GTCCGGTGGTACCGAGCTGCCGGAGGCCAAGAAGCCCAAGGCGGATGTCG ACCCCGAGACCGCTGAGCCTTCCAAATCAGTAGAAACCCCAGCAGAGACT CCAGTTGCGGAGCCGGCCGCGTGAGCGGATGTCGACCCCGAGACCGCTGA GCCTTCCAAATCAGTAGAAACCCCAGCAGAGACTCCAGTTGCGGAGCCGG CCGCGTGA back to top
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