mRNA_F-serratus_M_contig1005.160.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1005.160.1
Unique NamemRNA_F-serratus_M_contig1005.160.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1005.160.1 vs. uniprot
Match: D7FTG0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTG0_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 8.420e-13
Identity = 88/190 (46.32%), Postives = 99/190 (52.11%), Query Frame = 1 
Query:   79 ITNKAEAEALSLEELKTELESRGVLTEGLKQAIMLETLLKHLEAAASTNGDSTKEVAEPNXXXXXXXXXXXXESAKGEEINKDAVPDAAILEAEVTXXXXXXXXXXDPKQDDTAAPAEPASAEEPADKPAEEIVAPAAEGATPTRPADEVSGGTELPEAKKPKADVDPETAEPSKSVETPAETPVAEPAA 648
            ++ KAEAEALS+EEL TEL SRG+ TEGLKQ  MLETLLKHLE AA TNG + +  A     XXXXXXX   ++                 EA   XXXXXXXXXX                                     TR  DEVSGGTE P+AKK KAD     AEP+K VET  E P +EPAA
Sbjct:    2 VSTKAEAEALSVEELTTELTSRGLPTEGLKQPAMLETLLKHLETAA-TNGTAAEAPAAEKAAXXXXXXXKKDDAXXXXXXXXXXXXXEKTEEAPAAXXXXXXXXXXXXXXXXXXX---------------------XXXXXXTTRTVDEVSGGTEEPDAKKAKADAPEAAAEPTKVVETATEAPASEPAA 169
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1005.160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTG0_ECTSI8.420e-1346.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1005contigF-serratus_M_contig1005:191089..196220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_001210.1
Exons4
Model size2095
Cds size579
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1005.160.1prot_F-serratus_M_contig1005.160.1Fucus serratus malepolypeptideF-serratus_M_contig1005 192533..196148 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928798.4000354-UTR-F-serratus_M_contig1005:191088..1925321622928798.4000354-UTR-F-serratus_M_contig1005:191088..192532Fucus serratus maleUTRF-serratus_M_contig1005 191089..192532 -
1690962576.8438618-UTR-F-serratus_M_contig1005:191088..1925321690962576.8438618-UTR-F-serratus_M_contig1005:191088..192532Fucus serratus maleUTRF-serratus_M_contig1005 191089..192532 -
1622928798.4722774-UTR-F-serratus_M_contig1005:196148..1962201622928798.4722774-UTR-F-serratus_M_contig1005:196148..196220Fucus serratus maleUTRF-serratus_M_contig1005 196149..196220 -
1690962576.8889961-UTR-F-serratus_M_contig1005:196148..1962201690962576.8889961-UTR-F-serratus_M_contig1005:196148..196220Fucus serratus maleUTRF-serratus_M_contig1005 196149..196220 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928798.4111488-CDS-F-serratus_M_contig1005:192532..1926161622928798.4111488-CDS-F-serratus_M_contig1005:192532..192616Fucus serratus maleCDSF-serratus_M_contig1005 192533..192616 -
1690962576.854488-CDS-F-serratus_M_contig1005:192532..1926161690962576.854488-CDS-F-serratus_M_contig1005:192532..192616Fucus serratus maleCDSF-serratus_M_contig1005 192533..192616 -
1622928798.4231923-CDS-F-serratus_M_contig1005:192876..1930111622928798.4231923-CDS-F-serratus_M_contig1005:192876..193011Fucus serratus maleCDSF-serratus_M_contig1005 192877..193011 -
1690962576.8638582-CDS-F-serratus_M_contig1005:192876..1930111690962576.8638582-CDS-F-serratus_M_contig1005:192876..193011Fucus serratus maleCDSF-serratus_M_contig1005 192877..193011 -
1622928798.4356008-CDS-F-serratus_M_contig1005:193406..1936701622928798.4356008-CDS-F-serratus_M_contig1005:193406..193670Fucus serratus maleCDSF-serratus_M_contig1005 193407..193670 -
1690962576.872937-CDS-F-serratus_M_contig1005:193406..1936701690962576.872937-CDS-F-serratus_M_contig1005:193406..193670Fucus serratus maleCDSF-serratus_M_contig1005 193407..193670 -
1622928798.4573588-CDS-F-serratus_M_contig1005:196052..1961481622928798.4573588-CDS-F-serratus_M_contig1005:196052..196148Fucus serratus maleCDSF-serratus_M_contig1005 196053..196148 -
1690962576.8808444-CDS-F-serratus_M_contig1005:196052..1961481690962576.8808444-CDS-F-serratus_M_contig1005:196052..196148Fucus serratus maleCDSF-serratus_M_contig1005 196053..196148 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1005.160.1

>prot_F-serratus_M_contig1005.160.1 ID=prot_F-serratus_M_contig1005.160.1|Name=mRNA_F-serratus_M_contig1005.160.1|organism=Fucus serratus male|type=polypeptide|length=193bp
MPITNKAEAEALSLEELKTELESRGVLTEGLKQAIMLETLLKHLEAAAST
NGDSTKEVAEPNGSSKDDAAPENGESAKGEEINKDAVPDAAILEAEVTLE
AEVTLEAEDPKQDDTAAPAEPASAEEPADKPAEEIVAPAAEGATPTRPAD
EVSGGTELPEAKKPKADVDPETAEPSKSVETPAETPVAEPAA*
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mRNA from alignment at F-serratus_M_contig1005:191089..196220-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1005.160.1 ID=mRNA_F-serratus_M_contig1005.160.1|Name=mRNA_F-serratus_M_contig1005.160.1|organism=Fucus serratus male|type=mRNA|length=5132bp|location=Sequence derived from alignment at F-serratus_M_contig1005:191089..196220- (Fucus serratus male)
TCTTCGCACCCGCGACAACCCTTTCCCGTCTCACCCTCTCTAGTCTTTTC
AGCTTCTCCTCTGAAATATATCATGCCTATCACTAACAAGGCCGAAGCGG
AGGCGCTGAGCTTGGAGGAGCTGAAGACTGAGCTCGAGAGCAGGGGAGTG
CTGACAGAGGGACTCAAGGTCGGTCGGTTGGGTGCGCCTTTGTTTCGTTT
TTTTTATCAGGAGCCACGAAAATTGTACGGTACTTTCTTTGTCTTCCCGA
CCCGGTCACCACCGACATCGAGCCCACGTAAACCGAAAGCCCTCGGCGCT
GATCCCACTTGAGCTCAGCGTGTCGGCACGATGTTAGGGTGTCGGCACGG
TGTGCGGATAGGCAGGATCCAAATATGCTTGAAACCTGCGGCGAATGGGA
CGAATCCCAAGACAAACATCTAGGGAGTCCACTGCTATGTTGGTCTTTTT
GTTTGCATTTGAGCGTTTCGCCTTATGTAAAGTTGACCTTACTGACCGTT
AGCTTTTTGGCACCGTCCTGCGAGCACCCATCGATGGCTCAAATTGTCCC
AAGCGGCCGCCGCAGCCAAACATGCCTCGTGTGGCGTGCGGTGTGCGATC
AGAAACTTCAGCTTACCGTGCATCCGTCCGTATCTGCGTAGTAAAAAAAT
GCTATCTTTAAACTACAGATATGTACAGATAGTACAGTACAACAGTAGTA
CAAATACAGTTGCCGAGGTCCCGAGCACTCCGAACAAATGGCGCGCTGTA
GGATCCATCACCCACAGCTGTTTCTCGTGGAACTCGCTCAGACTCACAAC
CCTTGCCAACGTGGCCTAGCGTGGAATGAAGCGCTTGTGTTCTGCTGGAC
TCGTCCAGAGTTACCCTTGGTACTGACAATCTTTTTTGTTGGGCCTGACA
GTTTTTCCTCCACCCGACACCAACCACTCCTATTCGTAGTTTATTTGTGA
GCCTGTGCTGTACTACTGTATCATACCCTTACACGTTGGTGTGTGATGAT
CATCATACATACAAACAGGAAGGAGATCATTTGGCGAGCTTTTTTTTCTT
TCTTCATTTGTTTAAAATCGCGTGGGCTGCCACAACGAAATACAGGATAA
GAGTTAAAAAGGTTATCCAACGTCTCTTAATCCCGTTGTAGTTGATGGTA
GATGCTATTGCCTTTGTGCAATCCCGATAGTCCGGATGGCGGTTTATCCG
ACAAAGTGTAGAGCAGCTGTACGTACTAACTGTACTGTCTGTTAAATGCC
GTTATACTGTAGACTAGTATGAGGGCCACTATCTATCTGTACGTGTAGCT
ACAAATATACCTGGTACATATCTTGTGTGCAGTGTATACCTGGTACATAT
CTTGTGTGCAGTGGGTACACGCCCGTACACCGAACACGTTTTTCTGTACG
ACGATTTTTCTTTAAACCCTCTACGTGTTTTCTTGAAGTCTTTTTGTTTT
CACAATTACATGCCAAGTACATACATACGAGCTTTACGTGACTTTGAAAA
TTGCAGTTACGAATTCCACTGGTTCGTTGGACCTCGGGTTCTCAAGCGAA
GTACTTTGTACTAACTGTTGCAACCTGAATGAAACGTCCACGACCTCCAA
GAATTTTGACTAAACTTTTTAAACGAAGAAAACAGTTAAATCTGGACCAC
AGAGTAGTACTCTGGTATTGTTTATTGATAGCCTGTAACCACGGAAGGCG
TTCGCGTCAGTTGTACCAGTTCGGATGTTAGAAGGCATTGTGCAGAGATC
GGAACGGTTTTTTATGTGAAGACAACAAGTGTCCGTTTTCCTACGCCTCG
GGGGGTGAAGGTTTGTTTTCGGTTTGCACGTATTTCGCTAATGTCCCGTT
GATATCCCAATATAATTGAACAATATAAACTCGCAATGGGGTCGACACCC
ATTCACAAATAAAGTATTCAAGTCATAAAACCCAAGACTGTCAAAACCCA
TAAAGCTCGAAGATTTTCGTCAATCATCCCGCTATGAAAAACACTTATCA
TAGTGCCTAGAGTGCTCAGATCGACTTTTAAAGCATTATTTTTACAGCAA
TGTCAAGAATACGTTTGCTTGATAGAAGGAAAAAAGTACGGTACCTGTAG
GTTTGAGTGATGTTCTTCCGTTTAGCTCAGTTCGCGATGAAGAAGTTTTG
TATTTGCAGCCTATGATATGATCCCACAGCTTTCCCCCCCCCTGACTGGG
AGATGCTCAGAAGGTCTAGGCGCGTTCTGATTTTTTTAGAAACAAGGTTC
TAATAGTTCACTTCTATTTGGTACCGTAGAAAACATGGTTGGGTTTATTT
CTCCGCTTTTGCTCTTCATATGTCCGATCAAAGTGTGAAGTTTTTGAAAA
AGGCACAAAAAACCCCGTGTTTTTTCCCGTCCATTTCCAAGACATGGTAA
TTTTCCTTGTTCAGCTGACCACGAGCACAGAGTTAGTTATTAACCACATA
TCCAGTGGATCCTCAGTTTGCTGAATATGATGACCACAGATGAACACGTG
CCAAATCAAGTTCCGCTATTATTTATTGTACTTTGCCTGTGATTATTCAG
CAAGCTATCATGCTCGAGACTCTCCTCAAGCACCTCGAAGCTGCTGCCTC
TACGAACGGCGACTCGACGAAGGAAGTCGCCGAGCCAAACGGCAGCAGCA
AGGACGACGCCGCCCCTGAAAACGGGGAAAGCGCCAAGGGTGAAGAGATC
AACAAGGACGCCGTACCGGACGCGGCCATCTTGGAGGCAGAGGTCACCTT
GGAGGCGGAGGTAACTTTGGAGGCGGAGGACCCCAAGCAAGACGACACAG
CTGCACCTGCTGAAGTGAGTGTTGTACTGTAGATGCTGTATACGACACCA
GTAACTGTTGGAGAGAAGCCGCTATCATAAATAACTAACCCCTGACCGAC
CGATTTGGAAAGCCATCAAGGTTCTGACATATTTTACTCTTTCATCAAAT
CAAGTCTTGTGACGCCGAGGTGAACAAATCTATGATGTACATGACTACCA
TACAAGTAGTAGAAAGAACCGGGAGAGGCTGGTTCACATAAAACTTAAGA
ATGAATTTTGGTGGATCCCTCAAATACGTGCGAATTCATGCCCCACCCCC
ACACCCCGCCACCCCCAACCCTCGTTTCTCCCTGTTCTACTGCATGTGCT
TACCTGGTACTGTATGTACCATCTGACGTCCGGCCCTCTCTTTTCCAATT
TCGCTTCAGCCGGCATCTGCGGAAGAACCAGCAGACAAACCCGCCGAAGA
AATCGTGGCTCCCGCCGCGGAGGGTGCGACGCCTACCCGACCAGCGGACG
AGGTGTCCGGTGGTACCGAGCTGCCGGAGGCCAAGAAGCCCAAGGTGTGT
GTACTCGTGACATTTTTGTGAACCATCACACAGCGAGAACGTCAGCCTTA
CGTTTATTCATATGAGGTTGTTCAATACACGTTTCTTTGCCGACGTCATT
GGACTATCAATAAAATGGCGGACGTTTCCTTCTCAATCCGATTCTTAACG
ACGAATGTTTCTCCAAAGCCGTTGCACTCACTTTTGAATGTATACAGCAA
TCAAATCCCTAACAAGCGCAATCGAACCCGTTTTCACGTCCCGACTCTCT
ACAGGCGGATGTCGACCCCGAGACCGCTGAGCCTTCCAAATCAGTAGAAA
CCCCAGCAGAGACTCCAGTTGCGGAGCCGGCCGCGTGAGCCGATCTCTTC
TAGGCTACTCGCCGACACGCGCACAGCGTATGCCCTGCCTGTTGTAGTAT
TTTCTATCTTTGTGCCCCGTTCGCCGCGAGTTTTAACTCCGGTGCACGAG
GGGGTGTGAAAACAGGGAGGCGTTTTGTGCTTGGGATCTGGCGTAGTATC
CGGTTCACTGTCTTTGTTGTGTGAAGGTGCTCGTTTATTTCTGCTTTCTA
CATTATTTTTGTTGTGTTTTGTTTTACAGCTTTTGTTTCCTGATTGTCAG
CAGCAACTCATTTATGCCAAGGTTTCGTCGCCCTACAGTAGTTCCGAGTA
CAGTAGGCACCTTTGGTTGAAAGGCAAACGCGAGATTGGATTGATCGCTC
TCGCATGTTGTGGAATGGGTTGGAAGGATGAGGTAGAAACTACAGTGCAA
GGCAGCACGAGACGTTCCAAGCCCTTCTTCGTTGAGACGTCAGGTGTGCA
GTGTAGCTAGACGAGGAGAGGCGGGTTCAGAGGTTTAGTACTCCCAGCAA
CACCTGGGCCCGTCGGTGAACGGTTGTAATGGTGAGAGGCGTCAAAGTTG
CCGAGGCTAGTACATAACACCCCTAGTTATTGATCGACCGACTCGGAGGT
AGGTGTTGTTGGAAAGCGACGCTAGGAGGGGTTGAGTCAAGAAGCGTTAG
ATAAACTCATGAAATCCTGCCCCGTCCGCTTGGAAACGTGTGATCAACGC
AGAGTTCAACAGCGGCGAGGGGAGTCGGCGGGCTTGTTGAGCTTTCTTTT
TTTCTCAAGCCCTTTCCCGCCTTTGTTTATTATTGCGAAATATCTCCTGT
TGGAATAGATCAGGGATATAGAAGAGGCTGCCGCGCTGCTTCCGAGCTAT
GTAGATCTTGTCACTACTGTACCGAATGTTGCCGAATGCGAGTAGCTGAC
AGCATAGTATTTACAGAATCAGTTCAGTGGCGTGAGCCACCAAGAAGCCT
CTTTGTAGTTAGCTTCATTCAGCTAGACGACCGACCGCTCACGGAATGTA
GCAGAAGAGCTGGTTATAGGTAGAGGAATCCAACGCCTGTGCTGATCACC
CTCTTTCGTGTGTAACGTATTACCCGTCGACTTTTGTCTTCTGACGTGGC
TGTGGTACAATACGGTACATCAGTAGTGTATGCGATAGGGATCGGTACGT
GTTTCGTTTGGACCCTGTAGTATATATCGTAGTTACATAGTACTATAGTA
TTTTCATGGGTTGTGCAGCAAGCGAGCTAAGGACGAAGTTATTACAGTTT
GCGTTGGGTGAGGGTTGACAAGATCGCTCGATGCGAGGCTGCCCGAGGTG
GAGACATGAAATGTACCTCATATTTATGTACCTCATTATTTTTTTAAGGT
GTTACACCCAAAGAAGAAATCGAGTTTTACTTACTACCACCACAACAGCA
TGGCACTTCCCGCTAGAGAGCTTCATAAATCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1005:191089..196220-

>mRNA_F-serratus_M_contig1005.160.1 ID=mRNA_F-serratus_M_contig1005.160.1|Name=mRNA_F-serratus_M_contig1005.160.1|organism=Fucus serratus male|type=CDS|length=1158bp|location=Sequence derived from alignment at F-serratus_M_contig1005:191089..196220- (Fucus serratus male)
ATGCCTATCACTAACAAGGCCGAAGCGGAGGCGCTGAGCTTGGAGGAGCT
GAAGACTGAGCTCGAGAGCAGGGGAGTGCTGACAGAGGGACTCAAGATGC
CTATCACTAACAAGGCCGAAGCGGAGGCGCTGAGCTTGGAGGAGCTGAAG
ACTGAGCTCGAGAGCAGGGGAGTGCTGACAGAGGGACTCAAGCAAGCTAT
CATGCTCGAGACTCTCCTCAAGCACCTCGAAGCTGCTGCCTCTACGAACG
GCGACTCGACGAAGGAAGTCGCCGAGCCAAACGGCAGCAGCAAGGACGAC
GCCGCCCCTGAAAACGGGGAAAGCGCCAAGGGTGAAGAGATCAACAAGGA
CGCCGTACCGGACGCGGCCATCTTGGAGGCAGAGGTCACCTTGGAGGCGG
AGGTAACTTTGGAGGCGGAGGACCCCAAGCAAGACGACACAGCTGCACCT
GCTGAACAAGCTATCATGCTCGAGACTCTCCTCAAGCACCTCGAAGCTGC
TGCCTCTACGAACGGCGACTCGACGAAGGAAGTCGCCGAGCCAAACGGCA
GCAGCAAGGACGACGCCGCCCCTGAAAACGGGGAAAGCGCCAAGGGTGAA
GAGATCAACAAGGACGCCGTACCGGACGCGGCCATCTTGGAGGCAGAGGT
CACCTTGGAGGCGGAGGTAACTTTGGAGGCGGAGGACCCCAAGCAAGACG
ACACAGCTGCACCTGCTGAACCGGCATCTGCGGAAGAACCAGCAGACAAA
CCCGCCGAAGAAATCGTGGCTCCCGCCGCGGAGGGTGCGACGCCTACCCG
ACCAGCGGACGAGGTGTCCGGTGGTACCGAGCTGCCGGAGGCCAAGAAGC
CCAAGCCGGCATCTGCGGAAGAACCAGCAGACAAACCCGCCGAAGAAATC
GTGGCTCCCGCCGCGGAGGGTGCGACGCCTACCCGACCAGCGGACGAGGT
GTCCGGTGGTACCGAGCTGCCGGAGGCCAAGAAGCCCAAGGCGGATGTCG
ACCCCGAGACCGCTGAGCCTTCCAAATCAGTAGAAACCCCAGCAGAGACT
CCAGTTGCGGAGCCGGCCGCGTGAGCGGATGTCGACCCCGAGACCGCTGA
GCCTTCCAAATCAGTAGAAACCCCAGCAGAGACTCCAGTTGCGGAGCCGG
CCGCGTGA
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