mRNA_F-serratus_M_contig1005.156.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1005.156.1
Unique NamemRNA_F-serratus_M_contig1005.156.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1005.156.1 vs. uniprot
Match: D7FTI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI1_ECTSI)

HSP 1 Score: 394 bits (1011), Expect = 8.340e-118
Identity = 243/522 (46.55%), Postives = 328/522 (62.84%), Query Frame = 2 
Query:   38 PLAMNIEDLIRFVAPEMANTDE-FPIESVVVS-PGSGSRDT--EIPNGLLHALASTLDAACDEMEDKIVVVREHAEAGAETAWRLHTDAPILAEIDHAIATRAVGDGKATGMVRRVRDMAKQVKSNVVTEWKAWEVDVMTRLNIDAEKALAQVSEAGSALTARGNEIKEMISLTDRARRSI----KREESRASVRSRMEKTEAALAKTRSEIGALEAEVEALRKLNEEASRKKMVLMEGKARREERINAADKRRASVVELMNLETKCFQLEREGLDWDEKLKMHMGLMLWTRPIKLLPDEIMLSYAAPHDSTLHHQLHFALSDRPGVRANAVTVRQTSLPSDAAARTFKSPAVTVGNESSASGRLSRLIFAEGEGRCGLFSGGECPGAAISGLRLVENVGDMRENVQMADWYVGRAYGLLQELHDLEKKYACTVVQHPEDGLPASRAMLTVEIANWRTRITL-RLRFRVSTSFGCCIGRPEVEVDVGDLEARAVDTAIRKAGGDRAGIFALTKAVRAAVACI 1576
            PL M +EDLI+F APE  + +  +   S+VV   G+ SRD   ++P+ L++A+A  LD A  EME+     + HA    E AW+ H+  PIL EID  IA           +  RVR +A Q+ + +  +  AWEV V+TR+  +A K L++VS++  AL  RG+E+++++S  D A ++I    ++EE RASVRS++ KT     + ++++  LE E+ AL    +  + KK  L+EGKARREER  AA KR ASVV LM LE K    E+E L+  EKL + +GL LW +PI LLPD++M+++AAPHD  L HQL F + +          VR    P      + K    TVG+ +SASGRLSRLIF EGEG  G+F G E  G A++GL  V+ V DMR  VQ A+W+V RAY LLQE+HDLEKKYACTV     DG  A+ A+L VE+ANWR++  L RLRF +STSF C +G P VEVD+G LE   VD AIRKAGGDRAG+ ++TK V AA AC+
Sbjct:  792 PLRMGMEDLIKFAAPEGVDRERRWATRSMVVPLKGTLSRDRLRDMPDELVYAIAGALDDAAIEMEEWAEGKKTHAVNCGEMAWKYHSQVPILGEIDRVIAEGEESSAANGDLASRVRGLAAQINAGMERQIGAWEVTVLTRIADEATKVLSKVSQSREALVKRGDELEDLMSHADLAEKAIAEEIRQEEQRASVRSQIAKTAERTKEVQADVCGLEEELAALELRQQAVAAKKAALLEGKARREERAKAAAKRSASVVRLMELEAKSIGFEKEALEMKEKLDVQLGLRLWCQPITLLPDKVMVAFAAPHDWALKHQLKFVVDETSAASGTCTMVRGPK-PEKRGVLSKKGGMATVGDMNSASGRLSRLIF-EGEG--GIFGGAE--GMAVAGLAWVKTVADMRTEVQNAEWFVSRAYSLLQEVHDLEKKYACTVTVVENDGASAAVAVLCVEVANWRSKQKLVRLRFGLSTSFACLVGAPLVEVDIGSLEVSVVDEAIRKAGGDRAGLMSITKGVEAAAACM 1307
[Close]
BLAST of mRNA_F-serratus_M_contig1005.156.1 vs. uniprot
Match: A0A6H5KY64_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY64_9PHAE)

HSP 1 Score: 227 bits (578), Expect = 1.130e-63
Identity = 140/279 (50.18%), Postives = 177/279 (63.44%), Query Frame = 2 
Query:  644 EIGALEAEVEALRKLNEEASRKKMVLMEGKARREERINAADKRRASVVELMNLETKCFQLEREGLDWDEKLKMHMGLMLWTRPIKLLPDEIMLSYAAPHDSTLHHQLHFALSDRPGVRANAVTVRQTSLPSDAAARTFKSPAVTVGN---ESSASGRLSRLIFAEGEGRCGLFSGGECPGAAISGLRLVENVGDMRENVQMADWYVGRAYGLLQELHDLEKKYACTVVQHPEDGLPAS---RAMLTVEIANWRTRITL-RLRFRVSTSFGCCIGRPEVE 1459
            ++  LE E+ AL    +  + KK  L+EGKARREER  AA KR ASVV LM LE K   +E+E L+  EKL + +GL LW +PI LLPD++M+++AAPHD  L HQL F + +          VR    P      + K    TVG+   E+SASGRLSRLIF EGEG  G+F G    G A++GL  V+ V DMR  VQ A+W+V RAY LLQE+HDLEKKYACTV     DG  A+    A+L VE+ANWR++  L RLRF +STSF C +G P+VE
Sbjct:  120 DVCGLEEELAALELRQQAVASKKAALLEGKARREERAKAAAKRSASVVRLMELEAKSIGIEKEALEMKEKLDVQLGLRLWCQPITLLPDKVMVAFAAPHDWGLKHQLKFVVDESSATSGTCTMVRGPK-PEKRGVFSKKGGMTTVGDVGCENSASGRLSRLIF-EGEG--GIFGG--AGGMAVAGLAGVKTVADMRTEVQNAEWFVSRAYSLLQEVHDLEKKYACTVAVVEHDGASAAVEKAAVLCVEVANWRSKQKLVRLRFGLSTSFACLVGAPQVE 392
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1005.156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTI1_ECTSI8.340e-11846.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KY64_9PHAE1.130e-6350.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1005contigF-serratus_M_contig1005:66496..76067 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons12
Model size2220
Cds size1545
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1005.156.1prot_F-serratus_M_contig1005.156.1Fucus serratus malepolypeptideF-serratus_M_contig1005 66542..75438 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928797.5307047-UTR-F-serratus_M_contig1005:66495..665411622928797.5307047-UTR-F-serratus_M_contig1005:66495..66541Fucus serratus maleUTRF-serratus_M_contig1005 66496..66541 +
1690962576.4531212-UTR-F-serratus_M_contig1005:66495..665411690962576.4531212-UTR-F-serratus_M_contig1005:66495..66541Fucus serratus maleUTRF-serratus_M_contig1005 66496..66541 +
1622928797.6774702-UTR-F-serratus_M_contig1005:75438..760671622928797.6774702-UTR-F-serratus_M_contig1005:75438..76067Fucus serratus maleUTRF-serratus_M_contig1005 75439..76067 +
1690962576.6033301-UTR-F-serratus_M_contig1005:75438..760671690962576.6033301-UTR-F-serratus_M_contig1005:75438..76067Fucus serratus maleUTRF-serratus_M_contig1005 75439..76067 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928797.5421817-CDS-F-serratus_M_contig1005:66541..665531622928797.5421817-CDS-F-serratus_M_contig1005:66541..66553Fucus serratus maleCDSF-serratus_M_contig1005 66542..66553 +
1690962576.463808-CDS-F-serratus_M_contig1005:66541..665531690962576.463808-CDS-F-serratus_M_contig1005:66541..66553Fucus serratus maleCDSF-serratus_M_contig1005 66542..66553 +
1622928797.551791-CDS-F-serratus_M_contig1005:67111..672731622928797.551791-CDS-F-serratus_M_contig1005:67111..67273Fucus serratus maleCDSF-serratus_M_contig1005 67112..67273 +
1690962576.4734318-CDS-F-serratus_M_contig1005:67111..672731690962576.4734318-CDS-F-serratus_M_contig1005:67111..67273Fucus serratus maleCDSF-serratus_M_contig1005 67112..67273 +
1622928797.56163-CDS-F-serratus_M_contig1005:67773..679091622928797.56163-CDS-F-serratus_M_contig1005:67773..67909Fucus serratus maleCDSF-serratus_M_contig1005 67774..67909 +
1690962576.4945905-CDS-F-serratus_M_contig1005:67773..679091690962576.4945905-CDS-F-serratus_M_contig1005:67773..67909Fucus serratus maleCDSF-serratus_M_contig1005 67774..67909 +
1622928797.5726266-CDS-F-serratus_M_contig1005:68349..684621622928797.5726266-CDS-F-serratus_M_contig1005:68349..68462Fucus serratus maleCDSF-serratus_M_contig1005 68350..68462 +
1690962576.5041015-CDS-F-serratus_M_contig1005:68349..684621690962576.5041015-CDS-F-serratus_M_contig1005:68349..68462Fucus serratus maleCDSF-serratus_M_contig1005 68350..68462 +
1622928797.5849528-CDS-F-serratus_M_contig1005:68873..690011622928797.5849528-CDS-F-serratus_M_contig1005:68873..69001Fucus serratus maleCDSF-serratus_M_contig1005 68874..69001 +
1690962576.5120842-CDS-F-serratus_M_contig1005:68873..690011690962576.5120842-CDS-F-serratus_M_contig1005:68873..69001Fucus serratus maleCDSF-serratus_M_contig1005 68874..69001 +
1622928797.5972972-CDS-F-serratus_M_contig1005:70055..701521622928797.5972972-CDS-F-serratus_M_contig1005:70055..70152Fucus serratus maleCDSF-serratus_M_contig1005 70056..70152 +
1690962576.5221791-CDS-F-serratus_M_contig1005:70055..701521690962576.5221791-CDS-F-serratus_M_contig1005:70055..70152Fucus serratus maleCDSF-serratus_M_contig1005 70056..70152 +
1622928797.6122298-CDS-F-serratus_M_contig1005:71200..713441622928797.6122298-CDS-F-serratus_M_contig1005:71200..71344Fucus serratus maleCDSF-serratus_M_contig1005 71201..71344 +
1690962576.5317783-CDS-F-serratus_M_contig1005:71200..713441690962576.5317783-CDS-F-serratus_M_contig1005:71200..71344Fucus serratus maleCDSF-serratus_M_contig1005 71201..71344 +
1622928797.6226637-CDS-F-serratus_M_contig1005:71830..719531622928797.6226637-CDS-F-serratus_M_contig1005:71830..71953Fucus serratus maleCDSF-serratus_M_contig1005 71831..71953 +
1690962576.5411055-CDS-F-serratus_M_contig1005:71830..719531690962576.5411055-CDS-F-serratus_M_contig1005:71830..71953Fucus serratus maleCDSF-serratus_M_contig1005 71831..71953 +
1622928797.6348948-CDS-F-serratus_M_contig1005:72964..730901622928797.6348948-CDS-F-serratus_M_contig1005:72964..73090Fucus serratus maleCDSF-serratus_M_contig1005 72965..73090 +
1690962576.5504498-CDS-F-serratus_M_contig1005:72964..730901690962576.5504498-CDS-F-serratus_M_contig1005:72964..73090Fucus serratus maleCDSF-serratus_M_contig1005 72965..73090 +
1622928797.6449785-CDS-F-serratus_M_contig1005:73587..737791622928797.6449785-CDS-F-serratus_M_contig1005:73587..73779Fucus serratus maleCDSF-serratus_M_contig1005 73588..73779 +
1690962576.5597727-CDS-F-serratus_M_contig1005:73587..737791690962576.5597727-CDS-F-serratus_M_contig1005:73587..73779Fucus serratus maleCDSF-serratus_M_contig1005 73588..73779 +
1622928797.6548452-CDS-F-serratus_M_contig1005:74431..746111622928797.6548452-CDS-F-serratus_M_contig1005:74431..74611Fucus serratus maleCDSF-serratus_M_contig1005 74432..74611 +
1690962576.5711617-CDS-F-serratus_M_contig1005:74431..746111690962576.5711617-CDS-F-serratus_M_contig1005:74431..74611Fucus serratus maleCDSF-serratus_M_contig1005 74432..74611 +
1622928797.6647718-CDS-F-serratus_M_contig1005:75306..754381622928797.6647718-CDS-F-serratus_M_contig1005:75306..75438Fucus serratus maleCDSF-serratus_M_contig1005 75307..75438 +
1690962576.5846384-CDS-F-serratus_M_contig1005:75306..754381690962576.5846384-CDS-F-serratus_M_contig1005:75306..75438Fucus serratus maleCDSF-serratus_M_contig1005 75307..75438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1005.156.1

>prot_F-serratus_M_contig1005.156.1 ID=prot_F-serratus_M_contig1005.156.1|Name=mRNA_F-serratus_M_contig1005.156.1|organism=Fucus serratus male|type=polypeptide|length=515bp
MNIEDLIRFVAPEMANTDEFPIESVVVSPGSGSRDTEIPNGLLHALASTL
DAACDEMEDKIVVVREHAEAGAETAWRLHTDAPILAEIDHAIATRAVGDG
KATGMVRRVRDMAKQVKSNVVTEWKAWEVDVMTRLNIDAEKALAQVSEAG
SALTARGNEIKEMISLTDRARRSIKREESRASVRSRMEKTEAALAKTRSE
IGALEAEVEALRKLNEEASRKKMVLMEGKARREERINAADKRRASVVELM
NLETKCFQLEREGLDWDEKLKMHMGLMLWTRPIKLLPDEIMLSYAAPHDS
TLHHQLHFALSDRPGVRANAVTVRQTSLPSDAAARTFKSPAVTVGNESSA
SGRLSRLIFAEGEGRCGLFSGGECPGAAISGLRLVENVGDMRENVQMADW
YVGRAYGLLQELHDLEKKYACTVVQHPEDGLPASRAMLTVEIANWRTRIT
LRLRFRVSTSFGCCIGRPEVEVDVGDLEARAVDTAIRKAGGDRAGIFALT
KAVRAAVACINGDG*
back to top

mRNA from alignment at F-serratus_M_contig1005:66496..76067+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1005.156.1 ID=mRNA_F-serratus_M_contig1005.156.1|Name=mRNA_F-serratus_M_contig1005.156.1|organism=Fucus serratus male|type=mRNA|length=9572bp|location=Sequence derived from alignment at F-serratus_M_contig1005:66496..76067+ (Fucus serratus male)
GCCGGGAGAGGAGAACGAGCTGGAGGAAAGCGTTATTCCTTTGGCGATGA
ACATCGAGGTGTGAACGAAGCATTCTTTATGCGCTTGGGGCGTGCATGAG
GCAATGGTCATGTAATGTATTAAGTACAGGTGCATATGTTTTGAAGACGT
CCCTCGCCGGGTGATGACCAGTGCGTAACATCGGACTCGAAAAACTAGTG
AAATTATGTTTTTTTGGGGGGCGGGGGGTAGGAGCGGGTACCACCTCCAA
ATGTTCTCCACACGTTAAACGTCGTACTATTATATTGACAGTAGAGTACT
GTACTGTATATTGTACTGAAATATACGTGGTACCTGTGTCTTGATGAATA
GTACTGGTAGTACTGTAGCAGTAATATACATGATGTGACGATACACCTAG
TACTGCAGTATACTTATATCAATGGTTTCTAGTATAAACAATACCGTTTT
ATTTTAGGGGAGGTGTATGTGTAGCGACTGGAGACGATTCATATAGTCAG
TTTCAAATCGTTGGGCGGCCGTCCTTCCTCCTGCGATGTGTCTAGCTCAA
GTTTTGCAGTAGTTTGAGACGTGTCGACGTATAAATTCGGTTCCTCTTGC
CCCAAACTTGGTTCAGGACCTGATCCGATTTGTCGCGCCAGAGATGGCGA
ACACGGACGAGTTCCCGATCGAAAGCGTCGTTGTATCGCCGGGTTCTGGG
TCTCGCGACACGGAGATCCCGAACGGCCTGCTCCATGCCCTCGCCTCGAC
GCTGGACGCCGCCTGTGATGAAATGGAGGTGTGTCTTTCAGTGCTAATAA
CTCGTTTTCAGGGCTGTTGAGATTTTTTTTTTCCATCTCACTTATTAATA
GTATATCCGATGGACCTCACTATTTCAATGCCTGTGGCCACGAAAGATCT
TCCCCTCTCCCCGGTTCACGCCTTGCCCGAATTTTATCGCGATGCAATTT
CAGCAATCCCACAACTCGTCAATCAACGGTTGAATTATACTTACTCGCGT
TCCCACGCTTTCCGTTACAAGAAAGAACACAAATCCTACTTTGTTGATAA
TCGAACTCACAACTTCCGCACTAGAAGGTGTGCAGGTTACCTACTACACC
ACTCAGGCGACGACTGAATGCTTTTATGGTGTGGTATTTGAAACAAGTGT
AGTCTAAGTAGGCAACCGTGTTTAGAGAAAAAATGCTCTCGGAGTATTGT
CTTTTACGTACAAAAAACTTGTCAAGACTTGAAAAGCTGTGTTCGATTTT
TTTTTTTTTTTTTTTTTGTGCCTTAAAGGACAAGATAGTCGTCGTTCGCG
AGCACGCCGAGGCTGGCGCAGAGACTGCCTGGAGGCTTCATACGGACGCA
CCTATTCTAGCGGAGATCGACCATGCTATCGCCACAAGGGCAGTTGGAGA
CGGAAAGGCAACGGGTGAGGGATAACGGAAGAGGGATGAGGGATGAGGCT
CATGCTTAGCGAGGGGCGACATTTTTATTTTTTGTCTCGTGTCGGACGGT
GTGGTTTCTGTTGGTTGTTTTTATCCAAAGGTTTGCGTTGATCTTTGTTG
TATTGATACTGTTATTTATATGTTATTTATATAAGACTTTTTCGTTGGAG
GTTGCATTATATGTACCAGTCTAAATATACGACAGTCGGTGCGTTGTGTC
TTGTGCACTTCATCGGTGTGCGTCAGACCTCAATGTGGTCCCTGAGACCA
AATGGGATACTTTTAATTCGAGTAATTTGTTTGTTGAAACAGCTTTTGAC
CCCCAATTTCCGGGAAGGTCTTTTTTACCTCAAAAGATTATTGGAATTAA
TGACTTACTGTACTCTTTGTAAATCCAACACATCGCTCGTTCGTTTTGCT
AAAGGCATGGTGAGGCGTGTTCGAGACATGGCTAAACAGGTTAAGAGCAA
TGTGGTGACTGAGTGGAAGGCTTGGGAGGTGGACGTAATGACGCGCTTGA
ACATCGACGCCGAGAAGGTGATAATACTGCTATTCATACACAGTATTAAC
CTACTAATGCTATGGAAAGTTTATACTGCTGCTATTAATACGGTAGAAAG
TATTTTGGGGGGGAGAGCGGGCCATTGGTTGACGATTATTGCCTTTCTTT
CCTTTTTTTTAACTCTGTTTTATTTTTTTCTGTCTAATGTAAAAAATCGC
TTTTTTTTCTAGTTTTCTAGATTTTCTCTCTCGTCTGGTAGCGCTGACAT
TTTGTTTTTTTACTGTCTTAGGAGTTCAACTCAAGAGGTCAAGGGTACAT
TCATGCCACAACAGCAAAACGTACAGGGTTGCTTTCAATATTAACTTTAA
TGTACAATGGTTATATTTACGTTGGAAGGCGTCTCGTTCTGTCTCGTCAA
ACCGTGTCGCTTTTCTGCAACTTTTTAGGCGCTCGCTCAGGTTTCCGAGG
CGGGTTCGGCGTTAACGGCCCGGGGCAATGAAATCAAAGAAATGATTTCT
CTAACCGACCGGGCGAGGCGTAGTATCAAGCGGGAGGAGTCTCGTGCCAG
TGTTCGGTGAGGTTTTCGTAAGTCGTAGCTGGCTTTTATAAGGGATGCGT
AAAACGTTTGGTGATCCGTGCGTCCAGTTCGTGAGGATGTGAGAAAGGCG
TCCTGCTTCTTTTAATTTTGAGTGCAGAAGGCGAAACGCCTGCGACACAT
ATCTGTCTTCGATGTGATAAAATTCGTTCATGTCTTTCTAAAATTTTCTC
GAAAGAAACAATCGCACCGACAACACTTGAATAAAATCGTCATTTTTTTT
GTGTCTCGCTGTTTTCGTTATAATTATCATGTCGATGTCGATGTCGCTCT
GGGGCGTTGTTGAGAAAAGCGCGAGGAAGGTAGCTGGGTGGTGACGTCAT
ATTAGGGCACGGCTTGCTGTTGTCCCCTTGTATGGCGTCACTACTGCAGT
CGGAGATGTTTTTGTTGTTATGGCTGACCTACGGCCGATGGGCCTCAAGT
AGCTCGCTCACTCACTTATCCCAACTACCAGGTATTGCAATGTTGCTATT
CTGTCTTTGGTCGCGAAGTAAGGATGTTCCTATCTTTCCTCTCTCCGGTT
CTCGCCTAGCTCTGCAGTTTTAAACCGCGATGATGGTGGAAGTTCAGCAC
TGTTACACCTCGATAAACTGTCGAATTTATCTTGGCTCAACCTTCTCACG
CCTTCCTTTCCGCTATAATATTACACTTTTTCCATGACTATCCATGACTA
TTGACTATTGACTATTACTACGGAACAAGAAAAAAAGTAAAAAGGAGATG
ATCCAGTCTGTCAACAATTGATTCGAATTGCTATTAAAAGTGAAACCGTG
TGGTTATCCGCTATCAACTACTACATAATTGAGGTACTAATAATACTGTA
CTAAAGGTACTGTATGTACTGTAAAGGTACTTCTGTACTGAAGGTACTTC
TGTACTGAAGGTACTTCTGTACTACTGCACTATTAATACTGTAGCTATGT
ATTCCAATCAGGTGGTGTGAATCGTCGAACGCACAGTAATTTGTGTAAAA
TGTTTTGTACCAGTAACTCGTATCTTCACATTTTCTATATATTATACATA
CCATTAATAGGTCTCGAATGGAGAAAACGGAAGCTGCCCTCGCCAAAACT
CGGTCTGAGATCGGCGCGCTCGAGGCCGAAGTGGAGGCACTCCGCAAACT
AAACGAGGTGAGTCGATTCATCGATTGCACTTTTACATAGCTCTAGAACT
GTTCGAACGGGGACAGGTAAAATTCAATTTTACTGTTCAGCTGACCACGA
GCAAGATTGGCAACCTTACCCGGTTGATGAGACATACTCTGCTATTAATA
TAATAAGTGATGATAATACATACGTAGTGTTAATACTACTAATACTATAA
TAACACCGTTATCCGTTATATTAAATATAATACTAATAATACTCGCTATT
CAGAACCGGTGTTCGCTGTAGATTTTCCCTCACAAAATCACATACTGGTA
CCTTTTAAAGTTTGCAATTTATCCAATTAGTCTATACAAGCATTCACTAA
AAATATAATAAAATAAGAGATTATTAATGGTTAGTGGATACACAAAATTC
GACTTCACGGTCGACGGGGGAAGGGGACAGCTTAATCCTTCTCGAGAGAA
AAAGTAAGGCAAGCACTGCAAAAGGAAGGTGGATGAGAAATCCTGTGTGA
CCCCGGCTGGTGCGTCCACAAGTCTGACGCCTAGAATAGGTGGGATGACA
ACACAATGTATAGCACACACCCAGTCGGTCCAGTAGCTGCGAACTCAGAT
AATGTAGAGAGTAACAAGGAAACAGGGGGGGGAGCACAAGGTACTCTGGG
CTTAAGTAAGAATTGTACAAGTAGAGAGAGTGTGTCCCCTTTGTCGCGTC
TGATCAGAGGTTTTCGTAATAAGTATAATTGATCCCCCCTCGGGAGGATC
AATGCGAGTGGATAGAATGACTAGGATGACAGGGCCGGATTGCGCGGTTA
TGTCCAATTTAATAAATACACACACACACACACACACACGTCGAACAACT
AAAAGTGTAATAGTGTTTACTTTCGATTATTCTGGATAGATTGGAAAAGT
TATGATCCTGTAGCAGCTGTTTGGTAATTTACCCTCTTTTTGAGAAAAAA
CTCTAATATCCAGAACGCAGCATTCACAATCGTTCATTTTTTTTCTTCTA
AATGTCTTTTTTTTTGTCTCATTTGTTTGATCGTGTTTTGTTTTCGTCCT
CACAGGAAGCGTCTCGCAAAAAGATGGTTTTGATGGAAGGAAAGGCGCGA
AGAGAAGAGAGGATCAATGCCGCAGACAAGCGCCGGGCCTCTGTAGTGGA
GCTCATGAATCTCGAAACTAAATGCTTTCAGCTTGAACGGGAGGGTCTGG
TGAGCGCGGTCTGTAATTAATAGCACTCTAAATAGTGCCTCTCATTAAGC
GTTGCATCACAGTATCACTCTATAATATCATAGTCCAGTTAAGACCTTCA
CTGTAGTCCAGTTAAGGCCTTCCGTGCTTCATTCCAATTTTCATTTTCAT
AGACTGCTACCCTAGGTCGGTGTTGTCGTTGTCTTAATTGTTTTTTTTAT
GGGCAACTCGCCCCTCTTTTTGTTTTTAAAAACTTTATTTTAATTTTCAA
ATATGCTCATCTCAGCGTTTGTTCGCACAGTAACTATGGTATATATACTA
TCGTATGCTGATATTGTGATCCAGGATTGGGACGAAAAGCTGAAGATGCA
CATGGGGCTGGGTAACTCGCCCCTCTTTTTGTTTTTAAAAACTTTTATTT
TAATTTTCAAATATGCTCATCTCAGCGTTTGTTCGCACAGTAACTATGGT
ATATCATACTATCGTATGCTGATATTGTGATCCAGGATTGGGACGAAAAG
CTGAAGATGCACATGGGGCTGATGCTATGGACCCGACCAATCAAGCTTCT
GCCGGATGAAATAATGTTATCCTATGCGGCACCTCACGACTCCACGCTCC
ACCACCAGGTGCGTTAACAATAGCGTTTTAGTGTGGTATGCGTTAACAAT
AGCGTTTTAGTGAGGTTTGCCTTAACAATAGCGTTTGAATGTCGTATGCG
TTAACAATAGCGTTTTAGTGTAGTATGCCTTTGCACTAGCCTTTTAGTGT
GGTCTGCCTTAGCAATAGCGTTTCAGTGTGGTATGCGTTAACAGTAGCAT
TTTAGTGATGTATGCCTTAACAATAACGTTTTAGTGTGGTATTGCTTTCC
CACATCTTCGCTCGATCACCCAGTACTGTACATTCTTTAGTACATTTTTT
CCCTCTTCCTTGATCCCTTTTTTGTTCCTTGATGCGTGATTGGGTAGATG
CTGAGAAGGTTTCGACTAGAGACTACAAGTAGATGCCTTTATATTTTTCT
TTAAACTCAGTCTCGACCCCCTTCTCATTATTGCCCGAAGTACATGGAAA
TCATTAGCAGCTGCTTCAGTAATTTTTAACGGCACATTTTGCCTCCGATA
GCCCCGCTCTTTGAGCCCCTTTGGAATACTCTACTGTACTGTAGTGTAGT
GTACTGTACTGTACGAGTAACACGTTTTAGCACGGCTTTAATATTAAGAG
CTTTACTGTTATTTATCTTGAGGTGAATAAAGGCTTCGGGGCTTCTTGTG
ATTTAAAATTTCCTTTGCACACGAGTAGTGTAGTCTGTCTCATGTGTGTT
TATTTTTTATTTTTCCTCTAGGCTCCTGGAATGCAACTATTTTGAAACTC
ATTCTTCATGCCAATCAATTTGCGTGGTAGGTCGATTCTCCCATCCCCGT
CCCCCTTTGAAGAATGCTAGCGAATCTCTCAACCCGCCCCCTCCCCTCCC
CCTTCCCCCCCCATCCCTTTTCCCCTTTGAAGAATGCTAGCTCTTGTATA
AGAGTGCGTATGGCAAAATATATTTGAAAAAGTACTGTAAACGCCGTGTA
TAAACATAAAAGCTTGTTTTTTCCGTCTTGTGGCTGATGTTACCGACGGT
GCTCCATCTTCTTTTCCAGCTCCATTTCGCGTTGAGCGATCGCCCTGGTG
TCCGAGCAAACGCGGTAACCGTGCGCCAGACGAGTCTTCCGTCGGACGCT
GCTGCGAGGACCTTTAAGAGTCCAGCGGTGACGGTCGGTAACGAGGTGAA
ATTTCGCTGTCGGTTGCAGCGGTCGGTAAAGAGGAGCCAACGACGGCGTC
TCGACCGTTCGTGTTGTTGTTGCTTCGGTTGGGCCATTTGCAACTACTCT
TCTGTTCTTGTCGGCGTGACAGGATGACAGAGACAGAGGATTACTGCACG
ATACGTCCCTGTTTTGTACATGGCTACTGACGCCAAGCGTCTTGTTGGTA
GAGCTCCAATCTCTTTTTACAAGATGTTGAAAGGAAGTCGATATACATAC
ACAAATAGCATAGCATAGCATCGGCGGTATCGTCTTCGTACGTGTATGCT
TATCATGTTGTCATGATAAACGTGTCAAATCGGACGGTTGGTCGAATACG
AGAACAGTGCCAAAATCTACTTTTCCAGATTGCCGATGTAACGGCATTAC
GTCGCTCTTCCTATCACCCACGCTGATTGGCGATCCCATTTCTATCACCC
ATGCTGATTGGTCaaAATCCCCTTTCTACTTGTCATTTCTAGAGTTCTGC
CTCCGGCCGGCTGAGCCGACTGATCTTCGCGGAGGGCGAGGGTCGTTGTG
GCCTCTTCAGCGGAGGGGAATGCCCCGGCGCAGCCATTTCCGGACTACGG
CTGGTGGAGAACGTGGGAGACATGAGAGAGAACGTGCAGATGGCGGATTG
GTATGTTGGGCGTGCGTATGGTCTCCTGCAAGAGGTAAGATATTTTATAA
CAGTATATCTTTTGCGGGTTTGTGTGTGCGTGTGCTTTTTTTTTATAATC
TCGGCATGTGCTTTCGATATTTTGAACATGAGGCTCTATGGATCTCCCCT
ACGTCGTAGAGTCTATACTGGTATAGTGTATGTTTCTATTATTAATATTA
CTGTAGTCTATGTCATAGTCTTCAGCCGAGTGATGGCTTCGAGACTTTTT
GATGCAGCTTGTTATGCAACTCTTGAGATTTTGTTTCGAAACGTTTTCTG
TCAAGATATTTAAGGCATTTTTTTTTCAATATTTCACGAGCGATTTCTAC
TCGCATCGTTCTTTTCTCCTGCTGGTTCTGGTTCTGCGAGTTGTTTGGGA
GCTAAAAAATAAAATAAAATAAAAAATGGTTCTGCCCCTGTGCCGAAAAG
CGTACCAGTATACGTTTTAGCCCTGGCGCAGGAAGATATGATGGCGTGTA
CTGCATAAATGTGCATAGGGGATTGGAGTTCGTCAAATATGTAGTCCTTT
TCTGACAAGTTAATCGGCTATGTGTATTGTGTATGGATGGGAGAGATGGT
TGTGTGTGTGTGTGTTTCGACCGGAAACGTTTACGCTTCAGTCCTGTATT
CTCGTTATTCTGTACTGTACTGTATCCTGTATGAAGCTGCACGATCTCGA
AAAGAAGTACGCCTGCACGGTGGTGCAACACCCAGAGGACGGGCTTCCCG
CCTCCAGAGCCATGTTGACCGTCGAGATCGCCAACTGGAGGACCAGGATT
ACCCTGCGCTTGAGGTTTCGCGTCTCGACCTCATTCGGCTGCTGCATCGG
ACGGCCGGAAGTCGAGGTGCGTTTCTACTCTATCCCGTCCCTTTTGCTTG
ATGTTTTCGTTTATACTGTATTTTAGTAATTATACTTCGAGTATTACATT
AATATATACTCTTGCTTATATATATATATTTTTTTAACACAACAGTAGGT
TCTTTACAAAAGTTGGCGTTTCTGTTGTGGGGTTTGTGCGTCCCACGAGA
TGTCCTTCCTTTTTTTACCTCTAGAAATGGGCTGTTGTGTTTTTGACCCC
CGAGGAAGTCCTGTAAAATCAGTCTTTAAATATTTATAGTTTAAGCATTA
TACAAAATATAAAATAATCGCTTGGACCAACAAATAGGCGCAAATCCACG
CGCGCACATTCTCGCCTGTTGAGGTCTTAATAATGTCTTTCCATGTAGAG
TAGAGTTTGAAGAAAAATCTGAACGCACCTACACCTTTTGAGTATCCCAT
CGTCCAGTCAGAGGAGAAACTTGTCAAAACGTTTAGGTGGGATCTTAGGC
TACAAAGGCAGAACCTTAGTTGTTTTGCCTTTTTTAATCCACCTTGTCAA
CTCCAGGACATCCGACCTTCGTTGAGGAGTCGAACGGTAGAGTACTAAAA
GTGTCGATTCTGCGCCACGGGTTTCAAAGTGTACTCTGTAGCATGTAGTG
GTTCCGATGATGATCGTCTTGTCATCCTTTCCGCCGATCTGTTGTACACG
GTTGTAATCAGGTGGACGTCGGCGATCTGGAGGCGAGGGCTGTAGACACA
GCGATTCGCAAGGCTGGCGGTGACCGCGCTGGTATTTTTGCATTGACGAA
GGCGGTCCGTGCAGCAGTTGCATGCATCAACGGCGACGGCTAGAGGGGAA
TGAAGAGGGAGGCCTGCGGTGCCGTAGGCATGGTACTGTAGCCCTAATTG
AGGCGTTATCACAGCGGGATGATACAGCTGTGTTCTCTGAATAAACGTTA
CTTTGGAGGACTTGAGGTACAGCACGAGTTACAGTACAAATGTTGACGCA
TGTTTATGTTGGTGTGGCGGGGTGGTGTAGTGACATGCTGCACAGATGTG
GCAGCGAGAGATAGAGATTGGCGGGTCGTTTGGGGTTTCGACATGGGCGC
GAAGGCGTGTCCTTTCGCGTGTTCCGTCGCGACAGTTCATTGCGAGGTGT
GATGCTGACCGACGCGTCCATCTGTTTTGTCTCGTCGTGGCATCGCGGTC
AAAACTTCGTGCTTATTTTCAGGGCTATGCGTGGTAACGAAGGCACCACG
TGGGATGGTATTCCATGAAAAGCCCGCCGCAGGCGGAAAAAGTTCTGAGC
TTTACTATCACAAGGATGGGATGGCAATCACTTTCTTTGATGATGGTAAT
GCGATGGGATGGGAAACATGAAGAAATGCATCGATGGGATGGGATGGTAA
TCGGCGTCGGGTGTAGATGGGATGGGATGGTAATGGGAGTCGGGTGCTGA
TGGGATGGGATGGTACTTGGAT
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1005:66496..76067+

>mRNA_F-serratus_M_contig1005.156.1 ID=mRNA_F-serratus_M_contig1005.156.1|Name=mRNA_F-serratus_M_contig1005.156.1|organism=Fucus serratus male|type=CDS|length=3090bp|location=Sequence derived from alignment at F-serratus_M_contig1005:66496..76067+ (Fucus serratus male)
ATGAACATCGAGATGAACATCGAGGACCTGATCCGATTTGTCGCGCCAGA
GATGGCGAACACGGACGAGTTCCCGATCGAAAGCGTCGTTGTATCGCCGG
GTTCTGGGTCTCGCGACACGGAGATCCCGAACGGCCTGCTCCATGCCCTC
GCCTCGACGCTGGACGCCGCCTGTGATGAAATGGAGGACCTGATCCGATT
TGTCGCGCCAGAGATGGCGAACACGGACGAGTTCCCGATCGAAAGCGTCG
TTGTATCGCCGGGTTCTGGGTCTCGCGACACGGAGATCCCGAACGGCCTG
CTCCATGCCCTCGCCTCGACGCTGGACGCCGCCTGTGATGAAATGGAGGA
CAAGATAGTCGTCGTTCGCGAGCACGCCGAGGCTGGCGCAGAGACTGCCT
GGAGGCTTCATACGGACGCACCTATTCTAGCGGAGATCGACCATGCTATC
GCCACAAGGGCAGTTGGAGACGGAAAGGCAACGGGACAAGATAGTCGTCG
TTCGCGAGCACGCCGAGGCTGGCGCAGAGACTGCCTGGAGGCTTCATACG
GACGCACCTATTCTAGCGGAGATCGACCATGCTATCGCCACAAGGGCAGT
TGGAGACGGAAAGGCAACGGGCATGGTGAGGCGTGTTCGAGACATGGCTA
AACAGGTTAAGAGCAATGTGGTGACTGAGTGGAAGGCTTGGGAGGTGGAC
GTAATGACGCGCTTGAACATCGACGCCGAGAAGGCATGGTGAGGCGTGTT
CGAGACATGGCTAAACAGGTTAAGAGCAATGTGGTGACTGAGTGGAAGGC
TTGGGAGGTGGACGTAATGACGCGCTTGAACATCGACGCCGAGAAGGCGC
TCGCTCAGGTTTCCGAGGCGGGTTCGGCGTTAACGGCCCGGGGCAATGAA
ATCAAAGAAATGATTTCTCTAACCGACCGGGCGAGGCGTAGTATCAAGCG
GGAGGAGTCTCGTGCCAGTGTTCGGCGCTCGCTCAGGTTTCCGAGGCGGG
TTCGGCGTTAACGGCCCGGGGCAATGAAATCAAAGAAATGATTTCTCTAA
CCGACCGGGCGAGGCGTAGTATCAAGCGGGAGGAGTCTCGTGCCAGTGTT
CGGTCTCGAATGGAGAAAACGGAAGCTGCCCTCGCCAAAACTCGGTCTGA
GATCGGCGCGCTCGAGGCCGAAGTGGAGGCACTCCGCAAACTAAACGAGG
TCTCGAATGGAGAAAACGGAAGCTGCCCTCGCCAAAACTCGGTCTGAGAT
CGGCGCGCTCGAGGCCGAAGTGGAGGCACTCCGCAAACTAAACGAGGAAG
CGTCTCGCAAAAAGATGGTTTTGATGGAAGGAAAGGCGCGAAGAGAAGAG
AGGATCAATGCCGCAGACAAGCGCCGGGCCTCTGTAGTGGAGCTCATGAA
TCTCGAAACTAAATGCTTTCAGCTTGAACGGGAGGGTCTGGAAGCGTCTC
GCAAAAAGATGGTTTTGATGGAAGGAAAGGCGCGAAGAGAAGAGAGGATC
AATGCCGCAGACAAGCGCCGGGCCTCTGTAGTGGAGCTCATGAATCTCGA
AACTAAATGCTTTCAGCTTGAACGGGAGGGTCTGGATTGGGACGAAAAGC
TGAAGATGCACATGGGGCTGATGCTATGGACCCGACCAATCAAGCTTCTG
CCGGATGAAATAATGTTATCCTATGCGGCACCTCACGACTCCACGCTCCA
CCACCAGGATTGGGACGAAAAGCTGAAGATGCACATGGGGCTGATGCTAT
GGACCCGACCAATCAAGCTTCTGCCGGATGAAATAATGTTATCCTATGCG
GCACCTCACGACTCCACGCTCCACCACCAGCTCCATTTCGCGTTGAGCGA
TCGCCCTGGTGTCCGAGCAAACGCGGTAACCGTGCGCCAGACGAGTCTTC
CGTCGGACGCTGCTGCGAGGACCTTTAAGAGTCCAGCGGTGACGGTCGGT
AACGAGCTCCATTTCGCGTTGAGCGATCGCCCTGGTGTCCGAGCAAACGC
GGTAACCGTGCGCCAGACGAGTCTTCCGTCGGACGCTGCTGCGAGGACCT
TTAAGAGTCCAGCGGTGACGGTCGGTAACGAGAGTTCTGCCTCCGGCCGG
CTGAGCCGACTGATCTTCGCGGAGGGCGAGGGTCGTTGTGGCCTCTTCAG
CGGAGGGGAATGCCCCGGCGCAGCCATTTCCGGACTACGGCTGGTGGAGA
ACGTGGGAGACATGAGAGAGAACGTGCAGATGGCGGATTGGTATGTTGGG
CGTGCGTATGGTCTCCTGCAAGAGAGTTCTGCCTCCGGCCGGCTGAGCCG
ACTGATCTTCGCGGAGGGCGAGGGTCGTTGTGGCCTCTTCAGCGGAGGGG
AATGCCCCGGCGCAGCCATTTCCGGACTACGGCTGGTGGAGAACGTGGGA
GACATGAGAGAGAACGTGCAGATGGCGGATTGGTATGTTGGGCGTGCGTA
TGGTCTCCTGCAAGAGCTGCACGATCTCGAAAAGAAGTACGCCTGCACGG
TGGTGCAACACCCAGAGGACGGGCTTCCCGCCTCCAGAGCCATGTTGACC
GTCGAGATCGCCAACTGGAGGACCAGGATTACCCTGCGCTTGAGGTTTCG
CGTCTCGACCTCATTCGGCTGCTGCATCGGACGGCCGGAAGTCGAGCTGC
ACGATCTCGAAAAGAAGTACGCCTGCACGGTGGTGCAACACCCAGAGGAC
GGGCTTCCCGCCTCCAGAGCCATGTTGACCGTCGAGATCGCCAACTGGAG
GACCAGGATTACCCTGCGCTTGAGGTTTCGCGTCTCGACCTCATTCGGCT
GCTGCATCGGACGGCCGGAAGTCGAGGTGGACGTCGGCGATCTGGAGGCG
AGGGCTGTAGACACAGCGATTCGCAAGGCTGGCGGTGACCGCGCTGGTAT
TTTTGCATTGACGAAGGCGGTCCGTGCAGCAGTTGCATGCATCAACGGCG
ACGGCTAGGTGGACGTCGGCGATCTGGAGGCGAGGGCTGTAGACACAGCG
ATTCGCAAGGCTGGCGGTGACCGCGCTGGTATTTTTGCATTGACGAAGGC
GGTCCGTGCAGCAGTTGCATGCATCAACGGCGACGGCTAG
back to top